Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000092.1

Orthogroup ID

OG0009561

Physical Location & Seq

Genomic Coordinates Reverse (-)

138933 .. 142242

Gene Structure 3310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000092.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggttatggcgctcaagtttggttcttcgttttcttgcttggctccttctctttctccccattcccaactgagaagaggttcacagttgagcttattacaagcacggtatggcagccaacaaagtaatgctcagcaactaagatatgctaaaggcaagtcatgcacattcctaaatcaagtacagaagtcaagcaaaaggatcccaaagagtcagagtgtgctctttgctgtttctgaagatcagtcacaaaacagtgagacaataccagatgttttggatcaagaaaatgacaatcctaacagcgatatatctccagctagcaattcatatttcctttttgatggtactggtggaaaaccaggtttaatctcattttataaccgtccgtataaaagagaagatgaagtttctataaatactccagagaggaagaatagcaaccttctatggctcgttggtcctgctgttcttgtagcttctttcatcttcccctcactttatctgcgcaaattaattttgaccatatttgaggattctttattgacagacttcctcatcttgttcttcacggaagctctcttctactgtggtgttgcggtgtttcttcttctgattgacaagttaaggaggccaactgaactggaactggctgcatacagtaacagaaccctggcccctcagttaggacagcgaatcttatctgttgctgccttggcacttagtcttataattcctatggtcactatgggctatgtctggccgtggactggccctgcagcttctgcaactctggctccgtatctggttggtatagttgtccaatttgcatttgaacagtatgcgagatataagaagtcaccttcatggcctgctatcccagtcatctttcaagtttatagattgcatcaactgaatagagcagcacaactggtgactgctctgtcgtttacagtcaaaggagctgagatgacctcacagaacttggcaataaacagctctttgggtacactgttgaatgtccttcaatgtctaggagttatctgcatttggtctctatcaagtttcctgatgaagcatttctcttccaccaccactaccgcacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

9.3

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63040 AT5G63040
fragaria_vesca	FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620
malus_domestica	MD06G1171000.v1.1 MD14G1176700.v1.1
prunus_persica	Prupe.5G170600_v2.0.a1
pyrus_communis	pycom06g15250 pycom14g14760
rosa_chinensis	RchiOBHm_Chr7g0193191
rosa_laevigata	RLG00000004288
rosa_multiflora	Rmu_ssc0000092.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262300
rosa_rugosa	Rorug07G0008200
rosa_samantha	Rh7AG133600 Rh7BG134600 Rh7CG137500 Rh7DG135600
rosa_wichuraiana	Rw7G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 731
AasI	GACNNNNNNGTC	1 cut(s)	943
Acc16I	TGCGCA	1 cut(s)	509
AciI	CCGC	2 cut(s)	599, 1101
AclWI	GGATC	3 cut(s)	196, 209, 288
AcoI	YGGCCR	1 cut(s)	761
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	3 cut(s)	183, 349, 1009
AfiI	CCNNNNNNNGG	2 cut(s)	686, 770
AgsI	TTSAA	4 cut(s)	836, 893, 1018, 1028
AjnI	CCWGG	2 cut(s)	361, 672
AluBI	AGCT	7 cut(s)	93, 320, 479, 578, 782, 965, 999
AluI	AGCT	7 cut(s)	93, 320, 479, 578, 782, 965, 999
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	254, 1059
AlwI	GGATC	3 cut(s)	196, 209, 288
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	5 cut(s)	632, 675, 761, 772, 869
ApeKI	GCWGC	5 cut(s)	114, 653, 710, 779, 923
AseI	ATTAAT	1 cut(s)	515
Asp700I	GAANNNNTTC	2 cut(s)	79, 1079
AspLEI	GCGC	2 cut(s)	13, 510
AspS9I	GGNCC	3 cut(s)	461, 676, 773
AsuHPI	GGTGA	2 cut(s)	852, 946
AsuNHI	GCTAGC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	5 cut(s)	126, 640, 697, 791, 935
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	748
BciT130I	CCWGG	2 cut(s)	363, 674
BcoDI	GTCTC	2 cut(s)	254, 1059
BfaI	CTAG	2 cut(s)	321, 1034
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	5 cut(s)	115, 654, 711, 780, 924
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	5 cut(s)	116, 655, 712, 781, 925
Bme1390I	CCNGG	2 cut(s)	363, 674
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	461, 676, 773
BmiI	GGNNCC	4 cut(s)	45, 203, 678, 798
BmrFI	CCNGG	2 cut(s)	363, 674
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	1 cut(s)	916
BmtI	GCTAGC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	959, 991
BpmI	CTGGAG	2 cut(s)	300, 408
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	1059
BsaJI	CCNNGG	3 cut(s)	672, 714, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 770
Bse1I	ACTGG	6 cut(s)	355, 648, 654, 775, 881, 936
BseBI	CCWGG	2 cut(s)	363, 674
BseDI	CCNNGG	3 cut(s)	672, 714, 764
BseLI	CCNNNNNNNGG	2 cut(s)	686, 770
BseMII	CTCAG	4 cut(s)	62, 146, 695, 957
BseNI	ACTGG	6 cut(s)	355, 648, 654, 775, 881, 936
BseXI	GCAGC	5 cut(s)	126, 640, 697, 791, 935
BshFI	GGCC	5 cut(s)	634, 677, 763, 774, 871
BsiHKAI	GWGCWC	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	686, 770
BsmAI	GTCTC	2 cut(s)	254, 1059
BsnI	GGCC	5 cut(s)	634, 677, 763, 774, 871
Bso31I	GGTCTC	1 cut(s)	1059
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	201, 241, 280
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	599, 1101
BspANI	GGCC	5 cut(s)	634, 677, 763, 774, 871
BspCNI	CTCAG	4 cut(s)	63, 145, 694, 958
BspLI	GGNNCC	4 cut(s)	45, 203, 678, 798
BspMAI	CTGCAG	1 cut(s)	781
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	3 cut(s)	196, 209, 288
BspTNI	GGTCTC	1 cut(s)	1059
BsrI	ACTGG	6 cut(s)	355, 648, 654, 775, 881, 936
BssECI	CCNNGG	3 cut(s)	672, 714, 764
BssMI	GATC	3 cut(s)	201, 241, 280
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	363, 674
Bst6I	CTCTTC	3 cut(s)	70, 587, 1090
BstAPI	GCANNNNNTGC	2 cut(s)	162, 785
BstC8I	GCNNGC	2 cut(s)	322, 873
BstDEI	CTNAG	6 cut(s)	71, 132, 140, 681, 722, 966
BstDSI	CCRYGG	1 cut(s)	764
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 510
BstKTI	GATC	3 cut(s)	204, 244, 283
BstMAI	GTCTC	2 cut(s)	254, 1059
BstMBI	GATC	3 cut(s)	201, 241, 280
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 716, 785, 794
BstNI	CCWGG	2 cut(s)	363, 674
BstSCI	CCNGG	2 cut(s)	361, 672
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	5 cut(s)	126, 640, 697, 791, 935
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	5 cut(s)	634, 677, 763, 774, 871
BtgI	CCRYGG	1 cut(s)	764
BtsIMutI	CAGTG	2 cut(s)	262, 1010
Cac8I	GCNNGC	2 cut(s)	322, 873
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	2 cut(s)	13, 510
Cfr13I	GGNCC	3 cut(s)	461, 676, 773
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	182, 348, 1008
CviAII	CATG	2 cut(s)	162, 867
CviQI	GTAC	3 cut(s)	182, 348, 1008
DdeI	CTNAG	6 cut(s)	71, 132, 140, 681, 722, 966
DpnI	GATC	3 cut(s)	203, 243, 282
DpnII	GATC	3 cut(s)	201, 241, 280
DrdI	GACNNNNNNGTC	1 cut(s)	943
DseDI	GACNNNNNNGTC	1 cut(s)	943
EaeI	YGGCCR	1 cut(s)	761
Eam1104I	CTCTTC	3 cut(s)	70, 587, 1090
EarI	CTCTTC	3 cut(s)	70, 587, 1090
Eco130I	CCWWGG	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	1059
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	361, 672
EcoT14I	CCWWGG	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	2 cut(s)	165, 870
FatI	CATG	2 cut(s)	161, 866
Fnu4HI	GCNGC	5 cut(s)	115, 654, 711, 780, 924
Fsp4HI	GCNGC	5 cut(s)	115, 654, 711, 780, 924
FspBI	CTAG	2 cut(s)	321, 1034
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	2 cut(s)	12, 509
GluI	GCNGC	5 cut(s)	115, 654, 711, 780, 924
GsuI	CTGGAG	2 cut(s)	300, 408
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	5 cut(s)	634, 677, 763, 774, 871
HhaI	GCGC	2 cut(s)	13, 510
Hin1II	CATG	2 cut(s)	165, 870
Hin6I	GCGC	2 cut(s)	11, 508
HinP1I	GCGC	2 cut(s)	11, 508
HinfI	GANTC	3 cut(s)	211, 536, 696
HphI	GGTGA	2 cut(s)	852, 946
Hpy166II	GTNNAC	4 cut(s)	83, 768, 951, 1010
Hpy188I	TCNGA	3 cut(s)	216, 238, 615
Hpy188III	TCNNGA	3 cut(s)	284, 425, 1069
Hpy8I	GTNNAC	4 cut(s)	83, 768, 951, 1010
HpyAV	CCTTC	4 cut(s)	57, 455, 873, 1034
HpyCH4V	TGCA	7 cut(s)	165, 656, 779, 788, 830, 907, 1047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 716, 785, 794
HpyF3I	CTNAG	6 cut(s)	71, 132, 140, 681, 722, 966
Hsp92II	CATG	2 cut(s)	165, 870
HspAI	GCGC	2 cut(s)	11, 508
Kzo9I	GATC	3 cut(s)	201, 241, 280
LmnI	GCTCC	3 cut(s)	49, 802, 962
Lsp1109I	GCAGC	5 cut(s)	126, 640, 697, 791, 935
LweI	GCATC	1 cut(s)	916
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	2 cut(s)	321, 1034
MaeIII	GTNAC	5 cut(s)	246, 662, 742, 858, 934
MalI	GATC	3 cut(s)	203, 243, 282
MboI	GATC	3 cut(s)	201, 241, 280
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	5 cut(s)	325, 512, 516, 732, 824
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	71, 423, 505, 526, 566, 624, 690, 985
MroXI	GAANNNNTTC	2 cut(s)	79, 1079
MseI	TTAA	3 cut(s)	368, 515, 626
MslI	CAYNNNNRTG	1 cut(s)	865
MspR9I	CCNGG	2 cut(s)	363, 674
MvaI	CCWGG	2 cut(s)	363, 674
MwoI	GCNNNNNNNGC	4 cut(s)	162, 716, 785, 794
NdeII	GATC	3 cut(s)	201, 241, 280
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	165, 870
NlaIV	GGNNCC	4 cut(s)	45, 203, 678, 798
NmuCI	GTSAC	4 cut(s)	246, 742, 858, 934
NsbI	TGCGCA	1 cut(s)	509
PdmI	GAANNNNTTC	2 cut(s)	79, 1079
PfeI	GAWTC	2 cut(s)	536, 696
PkrI	GCNGC	5 cut(s)	116, 655, 712, 781, 925
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PshBI	ATTAAT	1 cut(s)	515
PsiI	TTATAA	2 cut(s)	381, 731
Psp6I	CCWGG	2 cut(s)	361, 672
PspGI	CCWGG	2 cut(s)	361, 672
PspN4I	GGNNCC	4 cut(s)	45, 203, 678, 798
PspPI	GGNCC	3 cut(s)	461, 676, 773
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	3 cut(s)	183, 349, 1009
RsaNI	GTAC	3 cut(s)	182, 348, 1008
RseI	CAYNNNNRTG	1 cut(s)	865
SaqAI	TTAA	3 cut(s)	368, 515, 626
SatI	GCNGC	5 cut(s)	115, 654, 711, 780, 924
Sau3AI	GATC	3 cut(s)	201, 241, 280
Sau96I	GGNCC	3 cut(s)	461, 676, 773
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	363, 674
SduI	GDGCHC	1 cut(s)	225
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	916
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	865
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	5 cut(s)	325, 512, 516, 732, 824
SsiI	CCGC	2 cut(s)	599, 1101
SspMI	CTAG	2 cut(s)	321, 1034
StyD4I	CCNGG	2 cut(s)	361, 672
StyI	CCWWGG	1 cut(s)	714
TasI	AATT	5 cut(s)	325, 512, 516, 732, 824
TatI	WGTACW	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	536, 696
Tru1I	TTAA	3 cut(s)	368, 515, 626
Tru9I	TTAA	3 cut(s)	368, 515, 626
TscAI	CASTG	2 cut(s)	262, 1017
TseFI	GTSAC	4 cut(s)	246, 742, 858, 934
TseI	GCWGC	5 cut(s)	114, 653, 710, 779, 923
Tsp45I	GTSAC	4 cut(s)	246, 742, 858, 934
TspDTI	ATGAA	5 cut(s)	318, 420, 475, 855, 1088
TspGWI	ACGGA	3 cut(s)	378, 587, 789
TspRI	CASTG	2 cut(s)	262, 1017
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	684
XmnI	GAANNNNTTC	2 cut(s)	79, 1079
XspI	CTAG	2 cut(s)	321, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.