Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009561

Physical Location & Seq

Genomic Coordinates Forward (+)

10719546 .. 10723345

Gene Structure 3800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCACATTCCTAAATCAAGTACAGAAGTCAGCAAAAGGATCCCAAAGAGTCAGAGTGTGCTCTTTGCTGTTTCTGAAGATCAGTCACAAAACAGTGAGACAATACCAGATGTTTTGGATCAAGAAAATGACAATCCTAACAGCGATATATCTCCAGCTAGCAATTCATATTTCCTTTTTGATGGTACTGGTGGAAAACCAGGTTTAATCTCATTTTATAACCGTCCGTATAAAAGAGAAGATGAAGTTTCTATAAATACTCCAGAGAGGAAGAATAGCAACCTTCTATGGCTCGTTGGTCCTGCTGTTCTTGTAGCTTCTTTCATCTTCCCCTCACTTTATCTGCGCAAATTAATTTTGACCATATTTGAGGATTCTTTATTGACAGATTTCCTCATCTTGTTCTTCACGGAAGCTCTCTTCTACTGTGGTGTTGCGGTGTTTCTTCTTCTGATTGACAAGTTAAGGAGGCCAACTGAACTGGAACTGGCTGCATACAGTAACAGAACCCTGGCCCCTCAGTTAGGACAGCGAATCTTATCTGTTGCTGCCTTGGCACTTAGTCTTATAATTCCTATGGTCACTATGGGCTATGTCTGGCCGTGGACTGGCCCTGCAGCTTCTGCAACTCTGGCTCCATATCTGGTTGGTATAGTCGTCCAATTTGCATTTGAACAGTATGCAGATATAAGAAGTCACCTTCATGGCCTGCTATCCCAGTCATCTTTCAAGTTTATAGATTGCATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.87

Weight (kDa)

5.23

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63040 AT5G63040
fragaria_vesca	FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620
malus_domestica	MD06G1171000.v1.1 MD14G1176700.v1.1
prunus_persica	Prupe.5G170600_v2.0.a1
pyrus_communis	pycom06g15250 pycom14g14760
rosa_chinensis	RchiOBHm_Chr7g0193191
rosa_laevigata	RLG00000004288
rosa_multiflora	Rmu_ssc0000092.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262300
rosa_rugosa	Rorug07G0008200
rosa_samantha	Rh7AG133600 Rh7BG134600 Rh7CG137500 Rh7DG135600
rosa_wichuraiana	Rw7G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	219, 569
Acc16I	TGCGCA	1 cut(s)	347
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	3 cut(s)	34, 47, 126
AcoI	YGGCCR	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	22, 187
AfiI	CCNNNNNNNGG	2 cut(s)	524, 608
AgsI	TTSAA	2 cut(s)	674, 730
AjnI	CCWGG	2 cut(s)	199, 510
AluBI	AGCT	4 cut(s)	158, 317, 416, 620
AluI	AGCT	4 cut(s)	158, 317, 416, 620
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	34, 47, 126
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	5 cut(s)	470, 513, 599, 610, 706
ApeKI	GCWGC	3 cut(s)	491, 548, 617
AseI	ATTAAT	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	299, 514, 611
AsuHPI	GGTGA	1 cut(s)	689
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	478, 535, 629
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	2 cut(s)	201, 512
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	3 cut(s)	492, 549, 618
BlsI	GCNGC	3 cut(s)	493, 550, 619
Bme1390I	CCNGG	2 cut(s)	201, 512
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	299, 514, 611
BmiI	GGNNCC	3 cut(s)	41, 516, 636
BmrFI	CCNGG	2 cut(s)	201, 512
BmrI	ACTGGG	1 cut(s)	712
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	712
BpmI	CTGGAG	2 cut(s)	138, 246
BsaJI	CCNNGG	3 cut(s)	510, 552, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 608
Bse1I	ACTGG	5 cut(s)	193, 486, 492, 613, 718
BseBI	CCWGG	2 cut(s)	201, 512
BseDI	CCNNGG	3 cut(s)	510, 552, 602
BseLI	CCNNNNNNNGG	2 cut(s)	524, 608
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	5 cut(s)	193, 486, 492, 613, 718
BseXI	GCAGC	3 cut(s)	478, 535, 629
BshFI	GGCC	5 cut(s)	472, 515, 601, 612, 708
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	524, 608
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	5 cut(s)	472, 515, 601, 612, 708
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	39, 79, 118
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	5 cut(s)	472, 515, 601, 612, 708
BspCNI	CTCAG	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	41, 516, 636
BspMAI	CTGCAG	1 cut(s)	619
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	34, 47, 126
BsrI	ACTGG	5 cut(s)	193, 486, 492, 613, 718
BssECI	CCNNGG	3 cut(s)	510, 552, 602
BssMI	GATC	3 cut(s)	39, 79, 118
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	201, 512
Bst4CI	ACNGT	5 cut(s)	95, 224, 428, 500, 678
Bst6I	CTCTTC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	160, 710
BstDEI	CTNAG	2 cut(s)	519, 560
BstDSI	CCRYGG	1 cut(s)	602
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	42, 82, 121
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	39, 79, 118
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 623, 632
BstNI	CCWGG	2 cut(s)	201, 512
BstSCI	CCNGG	2 cut(s)	199, 510
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	3 cut(s)	478, 535, 629
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	472, 515, 601, 612, 708
BtgI	CCRYGG	1 cut(s)	602
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	160, 710
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	299, 514, 611
CsiI	ACCWGGT	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	21, 186
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	2 cut(s)	21, 186
DdeI	CTNAG	2 cut(s)	519, 560
DpnI	GATC	3 cut(s)	41, 81, 120
DpnII	GATC	3 cut(s)	39, 79, 118
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	96
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	199, 510
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	1 cut(s)	707
FatI	CATG	1 cut(s)	703
Fnu4HI	GCNGC	3 cut(s)	492, 549, 618
Fsp4HI	GCNGC	3 cut(s)	492, 549, 618
FspBI	CTAG	1 cut(s)	159
FspI	TGCGCA	1 cut(s)	347
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	492, 549, 618
GsuI	CTGGAG	2 cut(s)	138, 246
HaeIII	GGCC	5 cut(s)	472, 515, 601, 612, 708
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	707
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	49, 374, 534
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	3 cut(s)	54, 76, 453
Hpy188III	TCNNGA	2 cut(s)	122, 263
Hpy8I	GTNNAC	1 cut(s)	606
HpyAV	CCTTC	2 cut(s)	293, 710
HpyCH4III	ACNGT	5 cut(s)	95, 224, 428, 500, 678
HpyCH4V	TGCA	7 cut(s)	4, 494, 617, 626, 668, 683, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 623, 632
HpyF3I	CTNAG	2 cut(s)	519, 560
Hsp92II	CATG	1 cut(s)	707
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	39, 79, 118
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	3 cut(s)	478, 535, 629
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	4 cut(s)	84, 500, 580, 695
MalI	GATC	3 cut(s)	41, 81, 120
MboI	GATC	3 cut(s)	39, 79, 118
MboII	GAAGA	8 cut(s)	89, 251, 283, 319, 397, 412, 437, 440
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	5 cut(s)	163, 350, 354, 570, 662
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	6 cut(s)	261, 343, 364, 404, 462, 528
MseI	TTAA	3 cut(s)	206, 353, 464
MslI	CAYNNNNRTG	1 cut(s)	702
MspR9I	CCNGG	2 cut(s)	201, 512
MvaI	CCWGG	2 cut(s)	201, 512
MwoI	GCNNNNNNNGC	3 cut(s)	554, 623, 632
NdeII	GATC	3 cut(s)	39, 79, 118
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	3 cut(s)	41, 516, 636
NmuCI	GTSAC	3 cut(s)	84, 580, 695
NsbI	TGCGCA	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	374, 534
PkrI	GCNGC	3 cut(s)	493, 550, 619
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PshBI	ATTAAT	1 cut(s)	353
PsiI	TTATAA	2 cut(s)	219, 569
Psp6I	CCWGG	2 cut(s)	199, 510
PspGI	CCWGG	2 cut(s)	199, 510
PspN4I	GGNNCC	3 cut(s)	41, 516, 636
PspPI	GGNCC	3 cut(s)	299, 514, 611
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	2 cut(s)	22, 187
RsaNI	GTAC	2 cut(s)	21, 186
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	3 cut(s)	206, 353, 464
SatI	GCNGC	3 cut(s)	492, 549, 618
Sau3AI	GATC	3 cut(s)	39, 79, 118
Sau96I	GGNCC	3 cut(s)	299, 514, 611
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	201, 512
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	160, 205, 285, 319, 418, 622, 702
SexAI	ACCWGGT	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	702
Sse9I	AATT	5 cut(s)	163, 350, 354, 570, 662
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	199, 510
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	95, 224, 428, 500, 678
TasI	AATT	5 cut(s)	163, 350, 354, 570, 662
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	374, 534
Tru1I	TTAA	3 cut(s)	206, 353, 464
Tru9I	TTAA	3 cut(s)	206, 353, 464
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	3 cut(s)	84, 580, 695
TseI	GCWGC	3 cut(s)	491, 548, 617
Tsp45I	GTSAC	3 cut(s)	84, 580, 695
TspDTI	ATGAA	4 cut(s)	156, 258, 313, 692
TspGWI	ACGGA	2 cut(s)	216, 425
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	299
VspI	ATTAAT	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	522
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.