Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009561

Physical Location & Seq

Genomic Coordinates Reverse (-)

58004550 .. 58007811

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004288

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGCTCAAGTTTGGTTCTTCGTTTTCTTGCTTGGCTCCTTCTCTTTCTCCCCATTCCCAACTGAGAAGAGGTTCACAGTTGAGCTTATTACAAGCACGGTATGGCAGCCATCAAACTAATGCTCAGCAACTAAGATATGCTAAAGGCAAGTCATGCACATTCTTATATCAAGTACAGAAGTCGAGCAAAAGGATCCCAAAGAGTCAGGGTATGCTCTTTGCTGTTTCTGAAGATCAGTCACAAAACAGTGAGACGATACCAGATGTTTTGGATCAAGAAAATGACGATCCTAACAGCGATATACCTCCTGCTAGCAATTCATATTTCCTTTTTGATGGTACTGGTGGAAAACCAGGTTTAATCTCATTTTATAACCATCCGTATAAAAGAGAAGATGAAGTTTCTATAAATACTCCTGAGAGGAAGAATAGCAACCTTCTATGGCTCGTTGGTCCTGCTGTTCTTGTAGCTTCTTTCATCTTCCCCTCACTTTATCTGCGCAAATTAATTTTGACCATATTTGAGGATTCTTTGTTGACAGACTTCCTCATCTTGTTCTTCACGGAAGCTCTCTTCTACTGTGGTGTTGCGGTGTTTCTTCTTCTGATTGACAAGTTAAGGAGGCCAACTGAACTGGAACTGGCTGCATACAGTAACAGAACCCTGGCCCCTCAGTTAGGACAGCGAATCTTATCTGTTGCTGCCTTGGCACTTAGTCTTATAATTCCTATGGTCACTATGGGCTATGTCTGGCCCTGGACTGGCCCTGCAGCTTCTGCAACTCTTGCTCCGTATCTGGTTGGTATAGTTGTCCAATTTGCATTTGAACAGTATGCGAGATATAAGAAGTCACCTTCATGGCCTGCTATCCCAGTCATCTTTCAAGTTTATAGATTGCATCAACTGAATAGAGCAGCACAACTGGTGACTGCTCTGTCGTTTACAGTCAAAGGAGCTGAGATGACCTCACAGAACTTGGCAATAAACAGCTCTTTGGGTACACTGTTGAATGTCCTTCAATGTCTAGGAGTCATCTGCATTTGGTCTCTATCAAGTTTCCTGATGAAGCATTTCTCTTCCACCACCACTACCGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

40.73

Weight (kDa)

9.1

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63040 AT5G63040
fragaria_vesca	FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620
malus_domestica	MD06G1171000.v1.1 MD14G1176700.v1.1
prunus_persica	Prupe.5G170600_v2.0.a1
pyrus_communis	pycom06g15250 pycom14g14760
rosa_chinensis	RchiOBHm_Chr7g0193191
rosa_laevigata	RLG00000004288
rosa_multiflora	Rmu_ssc0000092.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262300
rosa_rugosa	Rorug07G0008200
rosa_samantha	Rh7AG133600 Rh7BG134600 Rh7CG137500 Rh7DG135600
rosa_wichuraiana	Rw7G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	375, 725
AasI	GACNNNNNNGTC	1 cut(s)	937
Acc16I	TGCGCA	1 cut(s)	503
AciI	CCGC	2 cut(s)	593, 1095
AclWI	GGATC	4 cut(s)	190, 203, 282, 284
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	177, 343, 1003
AfiI	CCNNNNNNNGG	2 cut(s)	680, 764
AgsI	TTSAA	4 cut(s)	830, 887, 1012, 1022
AjnI	CCWGG	3 cut(s)	355, 666, 758
AluBI	AGCT	6 cut(s)	87, 473, 572, 776, 959, 993
AluI	AGCT	6 cut(s)	87, 473, 572, 776, 959, 993
Alw26I	GTCTC	2 cut(s)	248, 1053
AlwI	GGATC	4 cut(s)	190, 203, 282, 284
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	5 cut(s)	626, 669, 755, 766, 863
ApeKI	GCWGC	5 cut(s)	108, 647, 704, 773, 917
AseI	ATTAAT	1 cut(s)	509
Asp700I	GAANNNNTTC	2 cut(s)	73, 1073
AspLEI	GCGC	2 cut(s)	7, 504
AspS9I	GGNCC	4 cut(s)	455, 670, 756, 767
AsuHPI	GGTGA	2 cut(s)	846, 940
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	120, 634, 691, 785, 929
BccI	CCATC	3 cut(s)	120, 332, 387
BciT130I	CCWGG	3 cut(s)	357, 668, 760
BcoDI	GTCTC	2 cut(s)	248, 1053
BfaI	CTAG	2 cut(s)	315, 1028
BfmI	CTRYAG	1 cut(s)	771
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	5 cut(s)	109, 648, 705, 774, 918
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	5 cut(s)	110, 649, 706, 775, 919
Bme1390I	CCNGG	3 cut(s)	357, 668, 760
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	4 cut(s)	455, 670, 756, 767
BmiI	GGNNCC	3 cut(s)	39, 197, 672
BmrFI	CCNGG	3 cut(s)	357, 668, 760
BmrI	ACTGGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	910
BmtI	GCTAGC	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	869
BplI	GAGNNNNNCTC	2 cut(s)	953, 985
Bpu1102I	GCTNAGC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	1053
BsaJI	CCNNGG	3 cut(s)	666, 708, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 764
Bse1I	ACTGG	6 cut(s)	349, 642, 648, 769, 875, 930
BseBI	CCWGG	3 cut(s)	357, 668, 760
BseDI	CCNNGG	3 cut(s)	666, 708, 758
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	680, 764
BseMII	CTCAG	5 cut(s)	56, 140, 411, 689, 951
BseNI	ACTGG	6 cut(s)	349, 642, 648, 769, 875, 930
BseXI	GCAGC	5 cut(s)	120, 634, 691, 785, 929
BshFI	GGCC	5 cut(s)	628, 671, 757, 768, 865
BslI	CCNNNNNNNGG	2 cut(s)	680, 764
BsmAI	GTCTC	2 cut(s)	248, 1053
BsmBI	CGTCTC	1 cut(s)	248
BsnI	GGCC	5 cut(s)	628, 671, 757, 768, 865
Bso31I	GGTCTC	1 cut(s)	1053
Bsp143I	GATC	4 cut(s)	195, 235, 274, 289
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	593, 1095
BspANI	GGCC	5 cut(s)	628, 671, 757, 768, 865
BspCNI	CTCAG	5 cut(s)	57, 139, 412, 688, 952
BspLI	GGNNCC	3 cut(s)	39, 197, 672
BspMAI	CTGCAG	1 cut(s)	775
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	4 cut(s)	190, 203, 282, 284
BspTNI	GGTCTC	1 cut(s)	1053
BsrI	ACTGG	6 cut(s)	349, 642, 648, 769, 875, 930
BssECI	CCNNGG	3 cut(s)	666, 708, 758
BssMI	GATC	4 cut(s)	195, 235, 274, 289
BssT1I	CCWWGG	1 cut(s)	708
Bst2UI	CCWGG	3 cut(s)	357, 668, 760
Bst4CI	ACNGT	9 cut(s)	81, 102, 251, 584, 656, 834, 949, 1008, 1101
Bst6I	CTCTTC	3 cut(s)	64, 581, 1084
BstAPI	GCANNNNNTGC	3 cut(s)	156, 779, 788
BstC8I	GCNNGC	2 cut(s)	316, 867
BstDEI	CTNAG	7 cut(s)	65, 126, 134, 420, 675, 716, 960
BstENI	CCTNNNNNAGG	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 504
BstKTI	GATC	4 cut(s)	198, 238, 277, 292
BstMAI	GTCTC	2 cut(s)	248, 1053
BstMBI	GATC	4 cut(s)	195, 235, 274, 289
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 710, 779, 788
BstNI	CCWGG	3 cut(s)	357, 668, 760
BstSCI	CCNGG	3 cut(s)	355, 666, 758
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	5 cut(s)	120, 634, 691, 785, 929
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	5 cut(s)	628, 671, 757, 768, 865
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	256, 1004
Cac8I	GCNNGC	2 cut(s)	316, 867
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	2 cut(s)	7, 504
Cfr13I	GGNCC	4 cut(s)	455, 670, 756, 767
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	176, 342, 1002
CviAII	CATG	2 cut(s)	156, 861
CviQI	GTAC	3 cut(s)	176, 342, 1002
DdeI	CTNAG	7 cut(s)	65, 126, 134, 420, 675, 716, 960
DpnI	GATC	4 cut(s)	197, 237, 276, 291
DpnII	GATC	4 cut(s)	195, 235, 274, 289
DrdI	GACNNNNNNGTC	1 cut(s)	937
DseDI	GACNNNNNNGTC	1 cut(s)	937
Eam1104I	CTCTTC	3 cut(s)	64, 581, 1084
EarI	CTCTTC	3 cut(s)	64, 581, 1084
Eco130I	CCWWGG	1 cut(s)	708
Eco31I	GGTCTC	1 cut(s)	1053
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	678
EcoRII	CCWGG	3 cut(s)	355, 666, 758
EcoT14I	CCWWGG	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	2 cut(s)	159, 864
FatI	CATG	2 cut(s)	155, 860
Fnu4HI	GCNGC	5 cut(s)	109, 648, 705, 774, 918
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	109, 648, 705, 774, 918
FspBI	CTAG	2 cut(s)	315, 1028
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	2 cut(s)	6, 503
GluI	GCNGC	5 cut(s)	109, 648, 705, 774, 918
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	628, 671, 757, 768, 865
HhaI	GCGC	2 cut(s)	7, 504
Hin1II	CATG	2 cut(s)	159, 864
Hin6I	GCGC	2 cut(s)	5, 502
HinP1I	GCGC	2 cut(s)	5, 502
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	4 cut(s)	205, 530, 690, 1032
HphI	GGTGA	2 cut(s)	846, 940
Hpy166II	GTNNAC	4 cut(s)	77, 540, 945, 1004
Hpy188I	TCNGA	2 cut(s)	232, 609
Hpy188III	TCNNGA	3 cut(s)	278, 419, 1063
Hpy8I	GTNNAC	4 cut(s)	77, 540, 945, 1004
HpyAV	CCTTC	4 cut(s)	51, 449, 867, 1028
HpyCH4III	ACNGT	9 cut(s)	81, 102, 251, 584, 656, 834, 949, 1008, 1101
HpyCH4V	TGCA	7 cut(s)	159, 650, 773, 782, 824, 901, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 710, 779, 788
HpyF3I	CTNAG	7 cut(s)	65, 126, 134, 420, 675, 716, 960
Hsp92II	CATG	2 cut(s)	159, 864
HspAI	GCGC	2 cut(s)	5, 502
Kzo9I	GATC	4 cut(s)	195, 235, 274, 289
LmnI	GCTCC	3 cut(s)	43, 796, 956
Lsp1109I	GCAGC	5 cut(s)	120, 634, 691, 785, 929
LweI	GCATC	1 cut(s)	910
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	2 cut(s)	315, 1028
MaeIII	GTNAC	5 cut(s)	240, 656, 736, 852, 928
MalI	GATC	4 cut(s)	197, 237, 276, 291
MboI	GATC	4 cut(s)	195, 235, 274, 289
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	5 cut(s)	319, 506, 510, 726, 818
MlyI	GAGTC	2 cut(s)	214, 1041
MnlI	CCTC	9 cut(s)	65, 318, 417, 499, 520, 560, 618, 684, 979
MroXI	GAANNNNTTC	2 cut(s)	73, 1073
MseI	TTAA	3 cut(s)	362, 509, 620
MslI	CAYNNNNRTG	1 cut(s)	859
MspR9I	CCNGG	3 cut(s)	357, 668, 760
MvaI	CCWGG	3 cut(s)	357, 668, 760
MwoI	GCNNNNNNNGC	4 cut(s)	156, 710, 779, 788
NdeII	GATC	4 cut(s)	195, 235, 274, 289
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	159, 864
NlaIV	GGNNCC	3 cut(s)	39, 197, 672
NmuCI	GTSAC	4 cut(s)	240, 736, 852, 928
NsbI	TGCGCA	1 cut(s)	503
PdmI	GAANNNNTTC	2 cut(s)	73, 1073
PfeI	GAWTC	2 cut(s)	530, 690
PkrI	GCNGC	5 cut(s)	110, 649, 706, 775, 919
PleI	GAGTC	2 cut(s)	213, 1040
PpsI	GAGTC	2 cut(s)	213, 1040
PshBI	ATTAAT	1 cut(s)	509
PsiI	TTATAA	2 cut(s)	375, 725
Psp6I	CCWGG	3 cut(s)	355, 666, 758
PspGI	CCWGG	3 cut(s)	355, 666, 758
PspN4I	GGNNCC	3 cut(s)	39, 197, 672
PspPI	GGNCC	4 cut(s)	455, 670, 756, 767
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	3 cut(s)	177, 343, 1003
RsaNI	GTAC	3 cut(s)	176, 342, 1002
RseI	CAYNNNNRTG	1 cut(s)	859
SaqAI	TTAA	3 cut(s)	362, 509, 620
SatI	GCNGC	5 cut(s)	109, 648, 705, 774, 918
Sau3AI	GATC	4 cut(s)	195, 235, 274, 289
Sau96I	GGNCC	4 cut(s)	455, 670, 756, 767
SchI	GAGTC	2 cut(s)	214, 1041
ScrFI	CCNGG	3 cut(s)	357, 668, 760
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	1 cut(s)	910
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	859
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	319, 506, 510, 726, 818
SsiI	CCGC	2 cut(s)	593, 1095
SspMI	CTAG	2 cut(s)	315, 1028
StyD4I	CCNGG	3 cut(s)	355, 666, 758
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	9 cut(s)	81, 102, 251, 584, 656, 834, 949, 1008, 1101
TaqI	TCGA	1 cut(s)	185
TasI	AATT	5 cut(s)	319, 506, 510, 726, 818
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	530, 690
Tru1I	TTAA	3 cut(s)	362, 509, 620
Tru9I	TTAA	3 cut(s)	362, 509, 620
TscAI	CASTG	2 cut(s)	256, 1011
TseFI	GTSAC	4 cut(s)	240, 736, 852, 928
TseI	GCWGC	5 cut(s)	108, 647, 704, 773, 917
Tsp45I	GTSAC	4 cut(s)	240, 736, 852, 928
TspDTI	ATGAA	5 cut(s)	312, 414, 469, 849, 1082
TspGWI	ACGGA	3 cut(s)	372, 581, 783
TspRI	CASTG	2 cut(s)	256, 1011
VpaK11BI	GGWCC	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	678
XmnI	GAANNNNTTC	2 cut(s)	73, 1073
XspI	CTAG	2 cut(s)	315, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.