Prupe.5G170600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009561
Physical Location & Seq
Forward (+)
14602464 .. 14606635
4172 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G170600.1

Sequence Viewer

Length: 1107 bp
ATGGCGCTTAAATTTGGTTCTTCGTTTTCCTGTTTGGCAACTTCTCTTGTTTCCCATTGCCAAGCGAGAAGAGGTTCCCAGTTGAGCTTATCACAACCACCGTACGGCAGCCAAAAACATGATGCTCAGCAGCTAAGATATGCTAAAGGTAAGTCATGCATATTCATACAGCGAGTACAGAAGTCAAGCAACAGAATCCCAAAGAGTCAGAGTGTTCTCTTCGCTGTTTCTGAAGACCAGTCACAATATAGTGAGATAAAACCAGATGCTGCAGAGCAAGAGAACCACCGTCCTGATTCCGAAGATATATTTCCAGCTAGTGGTTCATACTTCCATTTTGATGGGACTGATGGAAAACCGGGTTTGATCTCATTCTATAACCGCCCATATAAAAGAGAAGAAGAAGTTTCTACAAATAATCCAGAAAGGAACCAAAACAACCTCTTATGGTTCATTGGTCCAGCTGTTCTTCTTGCGTCTTTCATTTTCCCCTCACTTTATCTGCGAAAAATCCTATCGACTGTATTTGAGGATTCTTTGTTGACAGATTTCCTCATCTTGTTCTTTACGGAAGCTATCTTCTACAGTGGTGTTGCGGTGTTCCTTCTTCTGATTGACCATTTAAGGAGGCCAACTGAACCAGAATTGATTGTCCACAGTAACAGAACCCTCACCCCTCAATTAGGACAGCGGATCTCATCTGTTGCTGCTTTGGTGCTTAGTCTTATAATTCCTATGGTGACTATGGGTTATGTCTGGCCGTGGACTGGCCCTGCAGCTTCTGCTACTCTTGCTCCATATCTGGTTGGTATAGTGGTCCAATTTGCATTTGAGCAGTGTGCAAGATATAAGAAGTCACCTTCATGGCCTGTTATCCCAGTCATCTTTCAAGTTTATAGATTGCATCAGCTGAATAGAGCAGCACAACTGGTGACTGCTCTGTCCTTTACAGTCAGAGGAGCTGAGACAACCTCACACAATTTGGCAATAAACAGCTCATTGGGAACACTTTTGAATGTCCTTCAATGTCTTGGTGTCATCTGCATTTGGTCTCTCTCAAGTTTCCTAATGAGGTTCTTCTCCTCTACCACCGTCGCTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

41.07

Weight (kDa)

8.98

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
AasI GACNNNNNNGTC 1 cut(s) 940
AccB7I CCANNNNNTGG 1 cut(s) 320
AciI CCGC 3 cut(s) 382, 596, 691
AclWI GGATC 1 cut(s) 701
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 104, 177
AfiI CCNNNNNNNGG 4 cut(s) 104, 320, 683, 767
AgsI TTSAA 3 cut(s) 890, 1015, 1025
AluBI AGCT 9 cut(s) 87, 133, 317, 464, 575, 779, 910, 962, 996
AluI AGCT 9 cut(s) 87, 133, 317, 464, 575, 779, 910, 962, 996
Alw26I GTCTC 2 cut(s) 959, 1056
AlwI GGATC 1 cut(s) 701
AlwNI CAGNNNCTG 2 cut(s) 269, 782
AoxI GGCC 4 cut(s) 629, 758, 769, 866
ApeKI GCWGC 7 cut(s) 108, 130, 269, 707, 776, 920, 1097
ApoI RAATTY 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 458, 770, 817
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 4 cut(s) 664, 751, 849, 943
AvaII GGWCC 2 cut(s) 458, 817
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 7 cut(s) 120, 142, 256, 694, 788, 932, 1084
BccI CCATC 2 cut(s) 335, 344
BceAI ACGGC 2 cut(s) 121, 745
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 959, 1056
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 3 cut(s) 270, 583, 774
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 7 cut(s) 109, 131, 270, 708, 777, 921, 1098
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 7 cut(s) 110, 132, 271, 709, 778, 922, 1099
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 458, 817
BmgT120I GGNCC 3 cut(s) 458, 770, 817
BmiI GGNNCC 2 cut(s) 76, 431
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 2 cut(s) 73, 872
BmsI GCATC 3 cut(s) 112, 256, 913
BmuI ACTGGG 2 cut(s) 73, 872
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 956, 988
Bpu1102I GCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 1042
BpuMI CCSGG 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 1056
BsaJI CCNNGG 1 cut(s) 761
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 320, 683, 767
Bse1I ACTGG 5 cut(s) 79, 238, 772, 878, 933
Bse3DI GCAATG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 761
BseLI CCNNNNNNNGG 4 cut(s) 104, 320, 683, 767
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 140, 954
BseNI ACTGG 5 cut(s) 79, 238, 772, 878, 933
BseRI GAGGAG 2 cut(s) 972, 1072
BseXI GCAGC 7 cut(s) 120, 142, 256, 694, 788, 932, 1084
BsgI GTGCAG 1 cut(s) 1083
BshFI GGCC 4 cut(s) 631, 760, 771, 868
BsiSI CCGG 1 cut(s) 359
BsiWI CGTACG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 4 cut(s) 104, 320, 683, 767
BsmAI GTCTC 2 cut(s) 959, 1056
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 4 cut(s) 631, 760, 771, 868
Bso31I GGTCTC 1 cut(s) 1056
Bsp143I GATC 2 cut(s) 366, 693
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 3 cut(s) 382, 596, 691
BspANI GGCC 4 cut(s) 631, 760, 771, 868
BspCNI CTCAG 2 cut(s) 139, 955
BspLI GGNNCC 2 cut(s) 76, 431
BspMAI CTGCAG 2 cut(s) 274, 778
BspPI GGATC 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 1056
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 5 cut(s) 79, 238, 772, 878, 933
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 2 cut(s) 366, 693
Bst4CI ACNGT 8 cut(s) 102, 290, 523, 587, 659, 952, 1093, 1104
Bst6I CTCTTC 2 cut(s) 64, 224
BstAPI GCANNNNNTGC 1 cut(s) 782
BstDEI CTNAG 4 cut(s) 126, 134, 719, 963
BstDSI CCRYGG 1 cut(s) 761
BstENI CCTNNNNNAGG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 369, 696
BstMAI GTCTC 2 cut(s) 959, 1056
BstMBI GATC 2 cut(s) 366, 693
BstMWI GCNNNNNNNGC 2 cut(s) 782, 791
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 3 cut(s) 270, 583, 774
BstV1I GCAGC 7 cut(s) 120, 142, 256, 694, 788, 932, 1084
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 693
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 1 cut(s) 693
BsuRI GGCC 4 cut(s) 631, 760, 771, 868
BtgI CCRYGG 1 cut(s) 761
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 2 cut(s) 592, 842
CaiI CAGNNNCTG 2 cut(s) 269, 782
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 458, 770, 817
CseI GACGC 1 cut(s) 465
Csp6I GTAC 2 cut(s) 103, 176
CviAII CATG 3 cut(s) 119, 156, 864
CviQI GTAC 2 cut(s) 103, 176
DdeI CTNAG 4 cut(s) 126, 134, 719, 963
DpnI GATC 2 cut(s) 368, 695
DpnII GATC 2 cut(s) 366, 693
DrdI GACNNNNNNGTC 1 cut(s) 940
DseDI GACNNNNNNGTC 1 cut(s) 940
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 2 cut(s) 64, 224
EarI CTCTTC 2 cut(s) 64, 224
Eco31I GGTCTC 1 cut(s) 1056
Eco47I GGWCC 2 cut(s) 458, 817
Eco57I CTGAAG 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoT22I ATGCAT 1 cut(s) 161
FaeI CATG 3 cut(s) 122, 159, 867
FaqI GGGAC 1 cut(s) 358
FatI CATG 3 cut(s) 118, 155, 863
Fnu4HI GCNGC 7 cut(s) 109, 131, 270, 708, 777, 921, 1098
Fsp4HI GCNGC 7 cut(s) 109, 131, 270, 708, 777, 921, 1098
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 109, 131, 270, 708, 777, 921, 1098
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 631, 760, 771, 868
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 465
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 122, 159, 867
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 4 cut(s) 195, 205, 296, 533
HpaII CCGG 1 cut(s) 359
HphI GGTGA 4 cut(s) 664, 751, 849, 943
Hpy166II GTNNAC 3 cut(s) 543, 655, 765
Hpy188I TCNGA 5 cut(s) 210, 232, 301, 612, 956
Hpy188III TCNNGA 2 cut(s) 293, 422
Hpy8I GTNNAC 3 cut(s) 543, 655, 765
Hpy99I CGWCG 1 cut(s) 1097
HpyAV CCTTC 3 cut(s) 614, 870, 1031
HpyCH4III ACNGT 8 cut(s) 102, 290, 523, 587, 659, 952, 1093, 1104
HpyCH4V TGCA 8 cut(s) 159, 272, 776, 827, 842, 904, 1044, 1100
HpyF10VI GCNNNNNNNGC 2 cut(s) 782, 791
HpyF3I CTNAG 4 cut(s) 126, 134, 719, 963
Hsp92II CATG 3 cut(s) 122, 159, 867
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 366, 693
LmnI GCTCC 2 cut(s) 799, 959
Lsp1109I GCAGC 7 cut(s) 120, 142, 256, 694, 788, 932, 1084
LweI GCATC 3 cut(s) 112, 256, 913
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 5 cut(s) 240, 659, 739, 855, 931
MalI GATC 2 cut(s) 368, 695
MboI GATC 2 cut(s) 366, 693
MflI RGATCY 1 cut(s) 693
MluCI AATT 6 cut(s) 11, 644, 680, 729, 821, 979
MlyI GAGTC 1 cut(s) 214
Mph1103I ATGCAT 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 2 cut(s) 9, 623
MslI CAYNNNNRTG 2 cut(s) 339, 862
MspA1I CMGCKG 3 cut(s) 464, 691, 910
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 782, 791
NciI CCSGG 1 cut(s) 360
NdeII GATC 2 cut(s) 366, 693
NlaIII CATG 3 cut(s) 122, 159, 867
NlaIV GGNNCC 2 cut(s) 76, 431
NmuCI GTSAC 4 cut(s) 240, 739, 855, 931
NsiI ATGCAT 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 195, 296, 533
Pfl23II CGTACG 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 7 cut(s) 110, 132, 271, 709, 778, 922, 1099
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PsiI TTATAA 1 cut(s) 728
PspLI CGTACG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 76, 431
PspPI GGNCC 3 cut(s) 458, 770, 817
PstI CTGCAG 2 cut(s) 274, 778
PstNI CAGNNNCTG 2 cut(s) 269, 782
PsuI RGATCY 1 cut(s) 693
PvuII CAGCTG 2 cut(s) 464, 910
RsaI GTAC 2 cut(s) 104, 177
RsaNI GTAC 2 cut(s) 103, 176
RseI CAYNNNNRTG 2 cut(s) 339, 862
SaqAI TTAA 2 cut(s) 9, 623
SatI GCNGC 7 cut(s) 109, 131, 270, 708, 777, 921, 1098
Sau3AI GATC 2 cut(s) 366, 693
Sau96I GGNCC 3 cut(s) 458, 770, 817
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 360
SfaNI GCATC 3 cut(s) 112, 256, 913
SfcI CTRYAG 3 cut(s) 270, 583, 774
SinI GGWCC 2 cut(s) 458, 817
SmiMI CAYNNNNRTG 2 cut(s) 339, 862
SmlI CTYRAG 1 cut(s) 1057
SmoI CTYRAG 1 cut(s) 1057
Sse9I AATT 6 cut(s) 11, 644, 680, 729, 821, 979
SsiI CCGC 3 cut(s) 382, 596, 691
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 8 cut(s) 102, 290, 523, 587, 659, 952, 1093, 1104
TaqI TCGA 1 cut(s) 518
TasI AATT 6 cut(s) 11, 644, 680, 729, 821, 979
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 3 cut(s) 195, 296, 533
Tru1I TTAA 2 cut(s) 9, 623
Tru9I TTAA 2 cut(s) 9, 623
TscAI CASTG 2 cut(s) 592, 842
TseFI GTSAC 4 cut(s) 240, 739, 855, 931
TseI GCWGC 7 cut(s) 108, 130, 269, 707, 776, 920, 1097
Tsp45I GTSAC 4 cut(s) 240, 739, 855, 931
TspDTI ATGAA 5 cut(s) 154, 315, 442, 472, 852
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 2 cut(s) 592, 842
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 458, 817
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.