Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009561

Physical Location & Seq

Genomic Coordinates Reverse (-)

56331041 .. 56334615

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGTTATGGCGCTCAAGTTTGGTTCTTCGTTTTCTTGCTTGGCTCCTTCTCTTTCTCCCCATTCCCAACTGAGAAGAGGTTCACAGCTTAAAGGTTTCGGCTTCCGAATTGGTAGGTCAAGAAAGAAGAAGAAAAGATTAGACATTGTTACTTGGATTCCCTTGCAGTGTGATTTTAGCTATTGGATGAAAGAAACAGGGTATGGCAGCCAACAAAGTAATGCTCAGCAACTAAGATATGCTAAAGGCAAGTCATGCACATTCCTAAATCAAGTACAGAAGTCGAGCAAAAGGATCCCAAAGAGTCAGAGTGTGCTCTTTGCTGTTTCTGAAGATCAGTCACAAAACAGTGAGGCAATACCAGATGTTTTGGATCAAGAAAATGACAATCCTAACAGCGATATATCTCCAGCTAGCAATTCATATTTCCTTTTTGATGGTGCTGGTGGAAAACCAGGTTTAATCTCATTTTATAACCGTCCGTATAAAAGAGAAGACGAAGTTTCTATAAATACTCCAGAGAGGAAGAACAGCAACCTTCTATGGCTCGTTGGTCCTGCTGTTCTTGTAGCTTCTTTCATCTTCCCCTCACTTTATCTGCGCAAATTAATTTTGACCATATTTGAGGATTCTTTGTTGACAGACTTCCTCATCTTGTTCTTCACGGAAGCTCTCTTCTACTGTGGTGTTGCGGTGTTTCTTCTTCTGATTGACAAGTTAAGGAGGCCAACTGAACTGGAACTGGCTGCATACAGTAACAGAACCCTGGCCCCTCAGTTAGGACAGCGAATCTTATCTGTTGCTGCCTTGGCACTTAGTCTTATAATTCCTATGGTCACTATGGGCTATGTCTGGCCATGGACTGGCCCTGCAGCTTCTGCAACTCTTGCTCCGTATCTGGTTGGTATAGTCGTCCAATTTGCATTTGAACAGTATGCGAGATATAAGAAGTCACCTTCATGGCCTGCTATCCCAGTCATCTTTCAAGTTTATAGATTGCATCAACTGAATAGAGCAGCACAACTGGTGACTGCTCTGTCGTTCACAGTCAAAGGAGCTGAGATGACCTCACAGAACTTGGCAATAAACAGCTCTTTGGGTACACTGTTGAATGTCCTTCAATGTCTAGGAGTTATCTGCATTTGGTCTCTATCAAGTTTCCTGATGAAGCATTTCTCTTCCACCACCACTACCGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

44.63

Weight (kDa)

9.55

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63040 AT5G63040
fragaria_vesca	FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620 FvH4_5g05620
malus_domestica	MD06G1171000.v1.1 MD14G1176700.v1.1
prunus_persica	Prupe.5G170600_v2.0.a1
pyrus_communis	pycom06g15250 pycom14g14760
rosa_chinensis	RchiOBHm_Chr7g0193191
rosa_laevigata	RLG00000004288
rosa_multiflora	Rmu_ssc0000092.1_g000028
rosa_roxburghii	Rroxscaffold_3G00262300
rosa_rugosa	Rorug07G0008200
rosa_samantha	Rh7AG133600 Rh7BG134600 Rh7CG137500 Rh7DG135600
rosa_wichuraiana	Rw7G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	474, 824
AasI	GACNNNNNNGTC	1 cut(s)	1036
Acc16I	TGCGCA	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	863
AciI	CCGC	2 cut(s)	692, 1194
AclWI	GGATC	3 cut(s)	289, 302, 381
AcoI	YGGCCR	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	276, 1102
AfiI	CCNNNNNNNGG	2 cut(s)	779, 863
AgsI	TTSAA	4 cut(s)	929, 986, 1111, 1121
AjnI	CCWGG	2 cut(s)	454, 765
AluBI	AGCT	8 cut(s)	88, 180, 413, 572, 671, 875, 1058, 1092
AluI	AGCT	8 cut(s)	88, 180, 413, 572, 671, 875, 1058, 1092
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	1152
AlwI	GGATC	3 cut(s)	289, 302, 381
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	5 cut(s)	725, 768, 854, 865, 962
ApeKI	GCWGC	5 cut(s)	207, 746, 803, 872, 1016
AseI	ATTAAT	1 cut(s)	608
Asp700I	GAANNNNTTC	2 cut(s)	79, 1172
AspLEI	GCGC	2 cut(s)	13, 603
AspS9I	GGNCC	3 cut(s)	554, 769, 866
AsuHPI	GGTGA	2 cut(s)	945, 1039
AsuNHI	GCTAGC	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	554
BalI	TGGCCA	1 cut(s)	856
BamHI	GGATCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	5 cut(s)	219, 733, 790, 884, 1028
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	456, 767
BcoDI	GTCTC	1 cut(s)	1152
BfaI	CTAG	2 cut(s)	414, 1127
BfmI	CTRYAG	1 cut(s)	870
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	5 cut(s)	208, 747, 804, 873, 1017
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	209, 748, 805, 874, 1018
Bme1390I	CCNGG	2 cut(s)	456, 767
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	3 cut(s)	554, 769, 866
BmiI	GGNNCC	3 cut(s)	45, 296, 771
BmrFI	CCNGG	2 cut(s)	456, 767
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	1 cut(s)	1009
BmtI	GCTAGC	1 cut(s)	417
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	1052, 1084
BpmI	CTGGAG	2 cut(s)	393, 501
Bpu1102I	GCTNAGC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	1152
BsaJI	CCNNGG	3 cut(s)	765, 807, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	2 cut(s)	779, 863
Bse1I	ACTGG	5 cut(s)	741, 747, 868, 974, 1029
BseBI	CCWGG	2 cut(s)	456, 767
BseDI	CCNNGG	3 cut(s)	765, 807, 857
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	779, 863
BseMII	CTCAG	4 cut(s)	62, 239, 788, 1050
BseNI	ACTGG	5 cut(s)	741, 747, 868, 974, 1029
BseXI	GCAGC	5 cut(s)	219, 733, 790, 884, 1028
BshFI	GGCC	5 cut(s)	727, 770, 856, 867, 964
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	779, 863
BsmAI	GTCTC	1 cut(s)	1152
BsnI	GGCC	5 cut(s)	727, 770, 856, 867, 964
Bso31I	GGTCTC	1 cut(s)	1152
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	294, 334, 373
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	2 cut(s)	692, 1194
BspANI	GGCC	5 cut(s)	727, 770, 856, 867, 964
BspCNI	CTCAG	4 cut(s)	63, 238, 787, 1051
BspLI	GGNNCC	3 cut(s)	45, 296, 771
BspMAI	CTGCAG	1 cut(s)	874
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	3 cut(s)	289, 302, 381
BspTNI	GGTCTC	1 cut(s)	1152
BsrI	ACTGG	5 cut(s)	741, 747, 868, 974, 1029
BssECI	CCNNGG	3 cut(s)	765, 807, 857
BssMI	GATC	3 cut(s)	294, 334, 373
BssT1I	CCWWGG	2 cut(s)	807, 857
Bst2UI	CCWGG	2 cut(s)	456, 767
Bst4CI	ACNGT	8 cut(s)	350, 479, 683, 755, 933, 1048, 1107, 1200
Bst6I	CTCTTC	3 cut(s)	70, 680, 1183
BstAPI	GCANNNNNTGC	3 cut(s)	255, 878, 887
BstC8I	GCNNGC	2 cut(s)	415, 966
BstDEI	CTNAG	6 cut(s)	71, 225, 233, 774, 815, 1059
BstDSI	CCRYGG	1 cut(s)	857
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 603
BstKTI	GATC	3 cut(s)	297, 337, 376
BstMAI	GTCTC	1 cut(s)	1152
BstMBI	GATC	3 cut(s)	294, 334, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 809, 878, 887
BstNI	CCWGG	2 cut(s)	456, 767
BstSCI	CCNGG	2 cut(s)	454, 765
BstSFI	CTRYAG	1 cut(s)	870
BstV1I	GCAGC	5 cut(s)	219, 733, 790, 884, 1028
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	727, 770, 856, 867, 964
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	3 cut(s)	173, 355, 1103
Cac8I	GCNNGC	2 cut(s)	415, 966
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	2 cut(s)	13, 603
Cfr13I	GGNCC	3 cut(s)	554, 769, 866
CsiI	ACCWGGT	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	275, 1101
CviAII	CATG	3 cut(s)	255, 858, 960
CviQI	GTAC	2 cut(s)	275, 1101
DdeI	CTNAG	6 cut(s)	71, 225, 233, 774, 815, 1059
DpnI	GATC	3 cut(s)	296, 336, 375
DpnII	GATC	3 cut(s)	294, 334, 373
DrdI	GACNNNNNNGTC	1 cut(s)	1036
DseDI	GACNNNNNNGTC	1 cut(s)	1036
EaeI	YGGCCR	1 cut(s)	854
Eam1104I	CTCTTC	3 cut(s)	70, 680, 1183
EarI	CTCTTC	3 cut(s)	70, 680, 1183
Eco130I	CCWWGG	2 cut(s)	807, 857
Eco31I	GGTCTC	1 cut(s)	1152
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	351
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoRII	CCWGG	2 cut(s)	454, 765
EcoT14I	CCWWGG	2 cut(s)	807, 857
ErhI	CCWWGG	2 cut(s)	807, 857
FaeI	CATG	3 cut(s)	258, 861, 963
FatI	CATG	3 cut(s)	254, 857, 959
Fnu4HI	GCNGC	5 cut(s)	208, 747, 804, 873, 1017
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	208, 747, 804, 873, 1017
FspBI	CTAG	2 cut(s)	414, 1127
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	2 cut(s)	12, 602
GluI	GCNGC	5 cut(s)	208, 747, 804, 873, 1017
GsuI	CTGGAG	2 cut(s)	393, 501
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	5 cut(s)	727, 770, 856, 867, 964
HhaI	GCGC	2 cut(s)	13, 603
Hin1II	CATG	3 cut(s)	258, 861, 963
Hin6I	GCGC	2 cut(s)	11, 601
HinP1I	GCGC	2 cut(s)	11, 601
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	4 cut(s)	157, 304, 629, 789
HphI	GGTGA	2 cut(s)	945, 1039
Hpy166II	GTNNAC	4 cut(s)	83, 639, 1044, 1103
Hpy188I	TCNGA	4 cut(s)	107, 309, 331, 708
Hpy188III	TCNNGA	4 cut(s)	120, 377, 518, 1162
Hpy8I	GTNNAC	4 cut(s)	83, 639, 1044, 1103
HpyAV	CCTTC	4 cut(s)	57, 548, 966, 1127
HpyCH4III	ACNGT	8 cut(s)	350, 479, 683, 755, 933, 1048, 1107, 1200
HpyCH4V	TGCA	8 cut(s)	166, 258, 749, 872, 881, 923, 1000, 1140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 809, 878, 887
HpyF3I	CTNAG	6 cut(s)	71, 225, 233, 774, 815, 1059
Hsp92II	CATG	3 cut(s)	258, 861, 963
HspAI	GCGC	2 cut(s)	11, 601
Kzo9I	GATC	3 cut(s)	294, 334, 373
LmnI	GCTCC	3 cut(s)	49, 895, 1055
Lsp1109I	GCAGC	5 cut(s)	219, 733, 790, 884, 1028
LweI	GCATC	1 cut(s)	1009
MabI	ACCWGGT	1 cut(s)	454
MaeI	CTAG	2 cut(s)	414, 1127
MaeIII	GTNAC	6 cut(s)	148, 339, 755, 835, 951, 1027
MalI	GATC	3 cut(s)	296, 336, 375
MboI	GATC	3 cut(s)	294, 334, 373
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	856
MluCI	AATT	6 cut(s)	108, 418, 605, 609, 825, 917
MluNI	TGGCCA	1 cut(s)	856
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	9 cut(s)	71, 346, 516, 598, 619, 659, 717, 783, 1078
Mox20I	TGGCCA	1 cut(s)	856
MroXI	GAANNNNTTC	2 cut(s)	79, 1172
MscI	TGGCCA	1 cut(s)	856
MseI	TTAA	4 cut(s)	90, 461, 608, 719
MslI	CAYNNNNRTG	1 cut(s)	958
Msp20I	TGGCCA	1 cut(s)	856
MspR9I	CCNGG	2 cut(s)	456, 767
MvaI	CCWGG	2 cut(s)	456, 767
MwoI	GCNNNNNNNGC	4 cut(s)	255, 809, 878, 887
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	3 cut(s)	294, 334, 373
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	3 cut(s)	258, 861, 963
NlaIV	GGNNCC	3 cut(s)	45, 296, 771
NmuCI	GTSAC	4 cut(s)	339, 835, 951, 1027
NsbI	TGCGCA	1 cut(s)	602
PdmI	GAANNNNTTC	2 cut(s)	79, 1172
PfeI	GAWTC	3 cut(s)	157, 629, 789
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	5 cut(s)	209, 748, 805, 874, 1018
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	608
PsiI	TTATAA	2 cut(s)	474, 824
Psp6I	CCWGG	2 cut(s)	454, 765
PspGI	CCWGG	2 cut(s)	454, 765
PspN4I	GGNNCC	3 cut(s)	45, 296, 771
PspPI	GGNCC	3 cut(s)	554, 769, 866
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	2 cut(s)	276, 1102
RsaNI	GTAC	2 cut(s)	275, 1101
RseI	CAYNNNNRTG	1 cut(s)	958
SaqAI	TTAA	4 cut(s)	90, 461, 608, 719
SatI	GCNGC	5 cut(s)	208, 747, 804, 873, 1017
Sau3AI	GATC	3 cut(s)	294, 334, 373
Sau96I	GGNCC	3 cut(s)	554, 769, 866
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	456, 767
SduI	GDGCHC	1 cut(s)	318
SexAI	ACCWGGT	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	1009
SfcI	CTRYAG	1 cut(s)	870
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	958
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	108, 418, 605, 609, 825, 917
SsiI	CCGC	2 cut(s)	692, 1194
SspMI	CTAG	2 cut(s)	414, 1127
StyD4I	CCNGG	2 cut(s)	454, 765
StyI	CCWWGG	2 cut(s)	807, 857
TaaI	ACNGT	8 cut(s)	350, 479, 683, 755, 933, 1048, 1107, 1200
TaqI	TCGA	1 cut(s)	284
TasI	AATT	6 cut(s)	108, 418, 605, 609, 825, 917
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	3 cut(s)	157, 629, 789
Tru1I	TTAA	4 cut(s)	90, 461, 608, 719
Tru9I	TTAA	4 cut(s)	90, 461, 608, 719
TscAI	CASTG	3 cut(s)	173, 355, 1110
TseFI	GTSAC	4 cut(s)	339, 835, 951, 1027
TseI	GCWGC	5 cut(s)	207, 746, 803, 872, 1016
Tsp45I	GTSAC	4 cut(s)	339, 835, 951, 1027
TspDTI	ATGAA	5 cut(s)	203, 411, 568, 948, 1181
TspGWI	ACGGA	3 cut(s)	471, 680, 882
TspRI	CASTG	3 cut(s)	173, 355, 1110
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	608
XagI	CCTNNNNNAGG	1 cut(s)	777
XmnI	GAANNNNTTC	2 cut(s)	79, 1172
XspI	CTAG	2 cut(s)	414, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.