MD14G1185500.v1.1

Calmodulin binding protein-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
27768754 .. 27773033
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1185500.v1.1.491

Sequence Viewer

Length: 1740 bp
ATGTCGCAGAAGAGGCAGCAGGATGAAGGCAAGGGTCGTTCGGATGGGACTAGTAGTCCGGATGACAAGCGTAGGAAGACCAGTTTCCAGAGCGTGGTTCTGGAAACGATGAGATTGCACAAAGTCCAGCATTTACTGGAGCCACTTCTAGAGCGTTTGATTCGTAAAGTTGTTAAAGAAGAAGTTGAGGAGGCCCTAAGAAAGCATTTGGCGAGTATGAAACAGAATTGTGGGAAAGAGACGGATCCTTCTGAATCAAGAATCTTAAAGCTACAGTTCTTAAATAACATCTCTCTTCCAGTATTTACTGGAGCTCGGATTGAAGGAGAAGAATGCTCCACTGTACAAGTAGCTTTGGTTGATTGCTTTAGTGGACATATTGTCAAATCCGGGCCTGAATCCACAGCCAAGGTGGAATTAGTTGTTCTTGAGGGTGATTTTGACGGTGAGGAGGGTGATAATTGGACACTTGAAGATTTCAAGAATAACATTGTGAGAGAGAGGGATGGAAAGAAACCTCTTCTTACAGGAGAGGCAGTTTTGAATCTTAAAGACGGAGTTGCACTTGTGGGTGAGATTTCTTTTACTGATAATTCAAGCTGGACAAGGAGCCGTAAGTTTAGGCTAGGAGCAAGAGTTTCAGATAACTTCGATGGAACTAGAATAAGAGAAGCAAGGACAGAATCCTTTATTGTCAGGGATCATCGGGGAGAATTGTACAAGAAACACCACCCTCCATCTCTGCTTGATGAAGTATGGAGACTAGAAAAGATTGGCAAGGACGGAGCTTTCCATAAGCGGTTGAGTCGGGAAAGCATCAACACTGTGAATGATTTTCTCATCCAACTCTTCATAAACCCTTCAAGGCTCCGGAATATCCTTGGGACGGGTATGTCTGCTAAGATGTGGGAAGTCACTGTGGAGCATGCTCAGAGATGTACACTCGATAAGAGGGTGTACTTGTACTACCCTCCCAGTTCACAGGAAACTGGTGTCGCCTTCAACATTGTAGGGCAAGTGATGGGACTTCTGTTGGAACATGAATATGTTTCTGTTAGTAAGCTGTCTGAAACACAAAAGGCACGCTACCTATCACCTCAGTCCACTCGCTTTTATCTTTTTTCTGTTGCTGATGGCTACCACCTGGTCATTTCTGCATTTGAACACTGGGAAGAAGTAGTCCCGTTTGAAGATGAAGCCTCTCTTATAGCTGCATCTTCCAACTTCACTAATGTTCTTCACACATCGAGCTCACCAAGGGCAGAGGATCTTGGCGGAAGCAAGTTTTTGGCTTCTCAAAAGATTGGTGGATTTGATTATGCACAGCCATCTGCCTCTTCTCCAGATATCATCCCATCCATCTATTCGGTGGGTAGCACCAGTGGCTTGGATGATTATGCCTTGCACAACATTGACGGCTTCGGTCTTAGATACGACCAGACTCTGAGTTTCCCAGGTCAAGTCACCAACTCCATGATCTTTGACACCGACCCCATGGCTCATGCTTTATTTGTTGAGGATCATCTGCAGTTTTCCGATGCTAATCTAGAGTCCCACAACATGAGTTCAGAATCACAATATCTACATAGCACTGTAGATCACTTTTTGCCGTGTTCAGCTGTTGCCATATCTGATAAGGCTCACAGGAGATGGACAAAGCTATTCAGTGTGCTGAAGTGGTTCTCAATAATGAGGAGCGTGGCTTCGAAACGAAGAGTTCAAGATATACAGAGATACTAG

Protein Analysis

580

Amino Acids

65.41

Weight (kDa)

6.23

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calmodulin_bind PF07887 89 - 235 4.2e-59 Calmodulin binding protein-like N-terminal domain
Calmod_bind_M PF20451 248 - 313 1.2e-30 Calmodulin binding protein central domain
Calmod_bind_C PF20452 319 - 361 7.8e-10 Calmodulin binding protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 892
AccB7I CCANNNNNTGG 1 cut(s) 94
AccIII TCCGGA 2 cut(s) 58, 870
AciI CCGC 2 cut(s) 799, 1275
AclWI GGATC 5 cut(s) 239, 252, 708, 1275, 1527
AcuI CTGAAG 1 cut(s) 1694
AfaI GTAC 5 cut(s) 345, 719, 940, 959, 965
AfiI CCNNNNNNNGG 2 cut(s) 94, 886
AhdI GACNNNNNGTC 2 cut(s) 54, 380
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 2 cut(s) 1143, 1453
Alw21I GWGCWC 2 cut(s) 316, 1253
Alw26I GTCTC 2 cut(s) 233, 754
AlwI GGATC 5 cut(s) 239, 252, 708, 1275, 1527
AlwNI CAGNNNCTG 1 cut(s) 1444
Aor13HI TCCGGA 2 cut(s) 58, 870
AoxI GGCC 2 cut(s) 192, 392
ApeKI GCWGC 2 cut(s) 16, 1211
Asp700I GAANNNNTTC 1 cut(s) 1679
AspS9I GGNCC 2 cut(s) 193, 392
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 7 cut(s) 446, 458, 467, 584, 1086, 1245, 1456
AsuII TTCGAA 1 cut(s) 1706
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 2 cut(s) 316, 1253
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 316, 1253
BbvI GCAGC 2 cut(s) 28, 1198
BceAI ACGGC 3 cut(s) 597, 1432, 1594
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 2 cut(s) 1145, 1455
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 233, 754
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 7 cut(s) 51, 149, 626, 660, 764, 1547, 1738
BfmI CTRYAG 3 cut(s) 272, 1526, 1593
BisI GCNGC 2 cut(s) 17, 1212
BlsI GCNGC 2 cut(s) 18, 1213
Bme1390I CCNGG 3 cut(s) 391, 1145, 1455
BmeRI GACNNNNNGTC 2 cut(s) 54, 380
BmgT120I GGNCC 2 cut(s) 193, 392
BmiI GGNNCC 4 cut(s) 141, 246, 611, 869
BmrFI CCNGG 3 cut(s) 391, 1145, 1455
BmrI ACTGGG 2 cut(s) 969, 1177
BmsI GCATC 3 cut(s) 825, 1223, 1528
BmuI ACTGGG 2 cut(s) 969, 1177
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 3 cut(s) 158, 330, 1326
Bpu14I TTCGAA 1 cut(s) 1706
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 1542
BsaJI CCNNGG 5 cut(s) 408, 880, 1256, 1453, 1494
BsaWI WCCGGW 2 cut(s) 58, 870
BsaXI ACNNNNNCTCC 4 cut(s) 522, 552, 621, 651
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 886
Bse1I ACTGG 8 cut(s) 81, 141, 299, 313, 975, 994, 1172, 1380
Bse8I GATNNNNATC 1 cut(s) 1542
BseAI TCCGGA 2 cut(s) 58, 870
BseBI CCWGG 2 cut(s) 1145, 1455
BseDI CCNNGG 5 cut(s) 408, 880, 1256, 1453, 1494
BseGI GGATG 8 cut(s) 28, 49, 67, 511, 840, 1350, 1355, 1396
BseJI GATNNNNATC 1 cut(s) 1542
BseLI CCNNNNNNNGG 2 cut(s) 94, 886
BseMII CTCAG 3 cut(s) 944, 1112, 1436
BseNI ACTGG 8 cut(s) 81, 141, 299, 313, 975, 994, 1172, 1380
BseRI GAGGAG 3 cut(s) 203, 464, 1708
BseXI GCAGC 2 cut(s) 28, 1198
BshFI GGCC 2 cut(s) 194, 394
BsiHKAI GWGCWC 2 cut(s) 316, 1253
BsiSI CCGG 3 cut(s) 59, 390, 871
BslFI GGGAC 5 cut(s) 61, 898, 1038, 1166, 1537
BslI CCNNNNNNNGG 2 cut(s) 94, 886
BsmAI GTCTC 2 cut(s) 233, 754
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 5 cut(s) 61, 898, 1038, 1166, 1537
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 2 cut(s) 194, 394
Bsp119I TTCGAA 1 cut(s) 1706
Bsp1286I GDGCHC 2 cut(s) 316, 1253
Bsp13I TCCGGA 2 cut(s) 58, 870
Bsp1407I TGTACA 3 cut(s) 343, 717, 938
Bsp143I GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
Bsp19I CCATGG 1 cut(s) 1494
BspACI CCGC 2 cut(s) 799, 1275
BspANI GGCC 2 cut(s) 194, 394
BspCNI CTCAG 3 cut(s) 943, 1111, 1437
BspEI TCCGGA 2 cut(s) 58, 870
BspLI GGNNCC 4 cut(s) 141, 246, 611, 869
BspMAI CTGCAG 1 cut(s) 1530
BspPI GGATC 5 cut(s) 239, 252, 708, 1275, 1527
BspT104I TTCGAA 1 cut(s) 1706
BsrGI TGTACA 3 cut(s) 343, 717, 938
BsrI ACTGG 8 cut(s) 81, 141, 299, 313, 975, 994, 1172, 1380
BssECI CCNNGG 5 cut(s) 408, 880, 1256, 1453, 1494
BssMI GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
BssT1I CCWWGG 4 cut(s) 408, 880, 1256, 1494
Bst2UI CCWGG 2 cut(s) 1145, 1455
Bst4CI ACNGT 6 cut(s) 276, 343, 446, 826, 919, 1594
Bst6I CTCTTC 6 cut(s) 5, 300, 525, 854, 1342, 1708
BstAUI TGTACA 3 cut(s) 343, 717, 938
BstBI TTCGAA 1 cut(s) 1706
BstC8I GCNNGC 2 cut(s) 927, 1084
BstDEI CTNAG 6 cut(s) 197, 900, 930, 1098, 1427, 1445
BstDSI CCRYGG 1 cut(s) 1494
BstF5I GGATG 8 cut(s) 28, 49, 67, 511, 840, 1350, 1355, 1396
BstKTI GATC 6 cut(s) 247, 703, 1270, 1479, 1522, 1600
BstMAI GTCTC 2 cut(s) 233, 754
BstMBI GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
BstMWI GCNNNNNNNGC 2 cut(s) 13, 1383
BstNI CCWGG 2 cut(s) 1145, 1455
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 3 cut(s) 389, 1143, 1453
BstSFI CTRYAG 3 cut(s) 272, 1526, 1593
BstV1I GCAGC 2 cut(s) 28, 1198
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 244, 1267
BstXI CCANNNNNNTGG 1 cut(s) 1387
BstYI RGATCY 2 cut(s) 244, 1267
BsuRI GGCC 2 cut(s) 194, 394
BtgI CCRYGG 1 cut(s) 1494
BtsCI GGATG 8 cut(s) 28, 49, 67, 511, 840, 1350, 1355, 1396
BtsIMutI CAGTG 7 cut(s) 339, 822, 915, 1165, 1387, 1590, 1672
Cac8I GCNNGC 2 cut(s) 927, 1084
CaiI CAGNNNCTG 1 cut(s) 1444
Cfr13I GGNCC 2 cut(s) 193, 392
CsiI ACCWGGT 1 cut(s) 1143
Csp6I GTAC 5 cut(s) 344, 718, 939, 958, 964
CviAII CATG 6 cut(s) 926, 1040, 1474, 1495, 1502, 1561
CviQI GTAC 5 cut(s) 344, 718, 939, 958, 964
DdeI CTNAG 6 cut(s) 197, 900, 930, 1098, 1427, 1445
DpnI GATC 6 cut(s) 246, 702, 1269, 1478, 1521, 1599
DpnII GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
DrdI GACNNNNNNGTC 1 cut(s) 892
DriI GACNNNNNGTC 2 cut(s) 54, 380
DseDI GACNNNNNNGTC 1 cut(s) 892
Eam1104I CTCTTC 6 cut(s) 5, 300, 525, 854, 1342, 1708
Eam1105I GACNNNNNGTC 2 cut(s) 54, 380
EarI CTCTTC 6 cut(s) 5, 300, 525, 854, 1342, 1708
EciI GGCGGA 1 cut(s) 1290
Ecl136II GAGCTC 2 cut(s) 314, 1251
Eco130I CCWWGG 4 cut(s) 408, 880, 1256, 1494
Eco24I GRGCYC 2 cut(s) 316, 1253
Eco32I GATATC 1 cut(s) 1348
Eco53kI GAGCTC 2 cut(s) 314, 1251
Eco57I CTGAAG 1 cut(s) 1694
EcoICRI GAGCTC 2 cut(s) 314, 1251
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 1143, 1453
EcoRV GATATC 1 cut(s) 1348
EcoT14I CCWWGG 4 cut(s) 408, 880, 1256, 1494
EcoT38I GRGCYC 2 cut(s) 316, 1253
ErhI CCWWGG 4 cut(s) 408, 880, 1256, 1494
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 6 cut(s) 929, 1043, 1477, 1498, 1505, 1564
FalI AAGNNNNNCTT 2 cut(s) 1188, 1220
FaqI GGGAC 5 cut(s) 61, 898, 1038, 1166, 1537
FatI CATG 6 cut(s) 925, 1039, 1473, 1494, 1501, 1560
Fnu4HI GCNGC 2 cut(s) 17, 1212
FokI GGATG 8 cut(s) 35, 56, 74, 518, 827, 1337, 1342, 1403
FriOI GRGCYC 2 cut(s) 316, 1253
Fsp4HI GCNGC 2 cut(s) 17, 1212
FspBI CTAG 7 cut(s) 51, 149, 626, 660, 764, 1547, 1738
GluI GCNGC 2 cut(s) 17, 1212
GsuI CTGGAG 3 cut(s) 158, 330, 1326
HaeIII GGCC 2 cut(s) 194, 394
HapII CCGG 3 cut(s) 59, 390, 871
Hin1II CATG 6 cut(s) 929, 1043, 1477, 1498, 1505, 1564
HpaII CCGG 3 cut(s) 59, 390, 871
HphI GGTGA 7 cut(s) 446, 458, 467, 584, 1086, 1245, 1456
Hpy166II GTNNAC 5 cut(s) 374, 941, 958, 980, 1104
Hpy8I GTNNAC 5 cut(s) 374, 941, 958, 980, 1104
HpyAV CCTTC 5 cut(s) 20, 258, 317, 870, 1009
HpyCH4III ACNGT 6 cut(s) 276, 343, 446, 826, 919, 1594
HpyCH4V TGCA 7 cut(s) 118, 563, 1157, 1214, 1322, 1405, 1528
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 1383
HpyF3I CTNAG 6 cut(s) 197, 900, 930, 1098, 1427, 1445
Hsp92II CATG 6 cut(s) 929, 1043, 1477, 1498, 1505, 1564
Kpn2I TCCGGA 2 cut(s) 58, 870
Kzo9I GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
LmnI GCTCC 9 cut(s) 139, 311, 341, 609, 629, 785, 873, 922, 1695
Lsp1109I GCAGC 2 cut(s) 28, 1198
LweI GCATC 3 cut(s) 825, 1223, 1528
MabI ACCWGGT 1 cut(s) 1143
MaeI CTAG 7 cut(s) 51, 149, 626, 660, 764, 1547, 1738
MaeIII GTNAC 2 cut(s) 913, 1462
MalI GATC 6 cut(s) 246, 702, 1269, 1478, 1521, 1599
MboI GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
MflI RGATCY 2 cut(s) 244, 1267
MhlI GDGCHC 2 cut(s) 316, 1253
MluCI AATT 5 cut(s) 226, 416, 460, 592, 713
MlyI GAGTC 3 cut(s) 814, 1435, 1559
MmeI TCCRAC 3 cut(s) 868, 1014, 1245
MroI TCCGGA 2 cut(s) 58, 870
MroXI GAANNNNTTC 1 cut(s) 1679
MseI TTAA 4 cut(s) 174, 266, 281, 549
MslI CAYNNNNRTG 1 cut(s) 1044
MspA1I CMGCKG 1 cut(s) 1619
MspI CCGG 3 cut(s) 59, 390, 871
MspR9I CCNGG 3 cut(s) 391, 1145, 1455
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 2 cut(s) 1145, 1455
MwoI GCNNNNNNNGC 2 cut(s) 13, 1383
NciI CCSGG 1 cut(s) 391
NcoI CCATGG 1 cut(s) 1494
NdeII GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
NlaIII CATG 6 cut(s) 929, 1043, 1477, 1498, 1505, 1564
NlaIV GGNNCC 4 cut(s) 141, 246, 611, 869
NmuCI GTSAC 2 cut(s) 913, 1462
NspI RCATGY 1 cut(s) 929
NspV TTCGAA 1 cut(s) 1706
PaeI GCATGC 1 cut(s) 929
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 1679
PfeI GAWTC 7 cut(s) 160, 254, 261, 398, 544, 683, 1571
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 2 cut(s) 18, 1213
PleI GAGTC 3 cut(s) 813, 1435, 1558
PpsI GAGTC 3 cut(s) 813, 1435, 1558
Psp124BI GAGCTC 2 cut(s) 316, 1253
Psp6I CCWGG 2 cut(s) 1143, 1453
PspGI CCWGG 2 cut(s) 1143, 1453
PspN4I GGNNCC 4 cut(s) 141, 246, 611, 869
PspPI GGNCC 2 cut(s) 193, 392
PstI CTGCAG 1 cut(s) 1530
PstNI CAGNNNCTG 1 cut(s) 1444
PsuI RGATCY 2 cut(s) 244, 1267
PvuII CAGCTG 1 cut(s) 1619
RsaI GTAC 5 cut(s) 345, 719, 940, 959, 965
RsaNI GTAC 5 cut(s) 344, 718, 939, 958, 964
RseI CAYNNNNRTG 1 cut(s) 1044
SacI GAGCTC 2 cut(s) 316, 1253
SaqAI TTAA 4 cut(s) 174, 266, 281, 549
SatI GCNGC 2 cut(s) 17, 1212
Sau3AI GATC 6 cut(s) 244, 700, 1267, 1476, 1519, 1597
Sau96I GGNCC 2 cut(s) 193, 392
SchI GAGTC 3 cut(s) 814, 1435, 1559
ScrFI CCNGG 3 cut(s) 391, 1145, 1455
SduI GDGCHC 2 cut(s) 316, 1253
SexAI ACCWGGT 1 cut(s) 1143
SfaNI GCATC 3 cut(s) 825, 1223, 1528
SfcI CTRYAG 3 cut(s) 272, 1526, 1593
SfuI TTCGAA 1 cut(s) 1706
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SpeI ACTAGT 1 cut(s) 50
SphI GCATGC 1 cut(s) 929
Sse9I AATT 5 cut(s) 226, 416, 460, 592, 713
SsiI CCGC 2 cut(s) 799, 1275
SspMI CTAG 7 cut(s) 51, 149, 626, 660, 764, 1547, 1738
SstI GAGCTC 2 cut(s) 316, 1253
StyD4I CCNGG 3 cut(s) 389, 1143, 1453
StyI CCWWGG 4 cut(s) 408, 880, 1256, 1494
TaaI ACNGT 6 cut(s) 276, 343, 446, 826, 919, 1594
TaqI TCGA 4 cut(s) 651, 945, 1247, 1706
TaqII GACCGA 1 cut(s) 1412
TasI AATT 5 cut(s) 226, 416, 460, 592, 713
TatI WGTACW 5 cut(s) 343, 717, 938, 957, 963
TfiI GAWTC 7 cut(s) 160, 254, 261, 398, 544, 683, 1571
Tru1I TTAA 4 cut(s) 174, 266, 281, 549
Tru9I TTAA 4 cut(s) 174, 266, 281, 549
TscAI CASTG 7 cut(s) 346, 829, 922, 1172, 1387, 1597, 1672
TseFI GTSAC 2 cut(s) 913, 1462
TseI GCWGC 2 cut(s) 16, 1211
Tsp45I GTSAC 2 cut(s) 913, 1462
TspDTI ATGAA 6 cut(s) 39, 233, 765, 841, 1056, 1209
TspGWI ACGGA 3 cut(s) 257, 570, 798
TspRI CASTG 7 cut(s) 346, 829, 922, 1172, 1387, 1597, 1672
Van91I CCANNNNNTGG 1 cut(s) 94
XbaI TCTAGA 2 cut(s) 148, 1546
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 2 cut(s) 409, 1366
XmnI GAANNNNTTC 1 cut(s) 1679
XspI CTAG 7 cut(s) 51, 149, 626, 660, 764, 1547, 1738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.