Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8246235.1

Orthogroup ID

OG0004999

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 531

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8246235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

tcatccaatgtcgccaatgttcatcagacatcaagttcaccaagaggggaggagtttactggaagcaagtttatgactactcaaaaaattggcggatttgattattcacaggcatccgcctcttctcctgatatcatttcatccatgtattctgtggggggtacaagtggcttggatgattatgccttgcacaacattgatggaatgggtcttagatatgaccagagtttaagcttcccaggtcaagttgggaattccctgatctgtgacccagattcaatagctgcattttgtgatgatgatcatctacagttttttgatactgatcttcagtcccagagcatgcttccagagtcaccagcagatctacaaagcgctgtagatggcttcttgttggcacaacgttctactgctgctgttgccgccatagataaggctcagaggagatggacgaaactattcagtgtcctcaagtggttctcaattcagaggagcgtgcggaaccgggttcgagacattccaagatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0008150 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0065007 GO:0080134 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

176

Amino Acids

19.29

Weight (kDa)

5.02

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62570 AT5G62570 AT5G62570 AT5G62570
fragaria_vesca	FvH4_5g16470
malus_domestica	MD06G1180400.v1.1 MD14G1185500.v1.1
prunus_persica	Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1
pyrus_communis	pycom06g15980 pycom14g15440 pycom14g15900
rosa_chinensis	RchiOBHm_Chr7g0179621
rosa_laevigata	RLG00000005336
rosa_multiflora	Rmu_co8246235.1_g000001 Rmu_sc0005329.1_g000026
rosa_roxburghii	Rroxscaffold_155G00443860 Rroxscaffold_3G00273590
rosa_rugosa	Rorug06G0426700
rosa_samantha	Rh7AG026100 Rh7BG025300 Rh7CG027400 Rh7DG026900
rosa_wichuraiana	Rw7G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	93, 117, 423, 499
AclI	AACGTT	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	163
AfeI	AGCGCT	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	234, 284
AluI	AGCT	2 cut(s)	234, 284
Alw26I	GTCTC	1 cut(s)	507
Aor51HI	AGCGCT	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	284, 413
ApoI	RAATTY	1 cut(s)	253
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	30, 348
BbvI	GCAGC	2 cut(s)	271, 400
BccI	CCATC	3 cut(s)	194, 377, 441
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	529
BfmI	CTRYAG	2 cut(s)	308, 378
BfoI	RGCGCY	1 cut(s)	378
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	3 cut(s)	285, 414, 423
BlsI	GCNGC	3 cut(s)	286, 415, 424
Bme1390I	CCNGG	2 cut(s)	240, 506
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	240, 506
BmsI	GCATC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	3 cut(s)	300, 303, 324
BsaJI	CCNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	64
Bse8I	GATNNNNATC	3 cut(s)	300, 303, 324
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	113, 140, 181
BseJI	GATNNNNATC	3 cut(s)	300, 303, 324
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	3 cut(s)	65, 457, 505
BseXI	GCAGC	2 cut(s)	271, 400
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	261, 301, 325, 364
BspACI	CCGC	4 cut(s)	93, 117, 423, 499
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	4 cut(s)	261, 301, 325, 364
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	344, 497
BstDEI	CTNAG	2 cut(s)	212, 438
BstF5I	GGATG	3 cut(s)	113, 140, 181
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	4 cut(s)	264, 304, 328, 367
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	4 cut(s)	261, 301, 325, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 422
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	238, 504
BstSFI	CTRYAG	2 cut(s)	308, 378
BstV1I	GCAGC	2 cut(s)	271, 400
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtsCI	GGATG	3 cut(s)	113, 140, 181
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	344, 497
CfoI	GCGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	145, 343
CviJI	RGCY	5 cut(s)	171, 234, 284, 387, 437
CviKI_1	RGCY	5 cut(s)	171, 234, 284, 387, 437
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	2 cut(s)	212, 438
DpnI	GATC	4 cut(s)	263, 303, 327, 366
DpnII	GATC	4 cut(s)	261, 301, 325, 364
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	2 cut(s)	106, 108
Eco32I	GATATC	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	133
FaeI	CATG	2 cut(s)	148, 346
FaiI	YATR	6 cut(s)	74, 146, 183, 219, 344, 428
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	144, 342
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	285, 414, 423
FokI	GGATG	3 cut(s)	100, 127, 188
Fsp4HI	GCNGC	3 cut(s)	285, 414, 423
FspBI	CTAG	1 cut(s)	529
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	3 cut(s)	285, 414, 423
HaeII	RGCGCY	1 cut(s)	378
HapII	CCGG	1 cut(s)	505
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	148, 346
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	2 cut(s)	275, 353
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	30, 348
Hpy166II	GTNNAC	2 cut(s)	38, 57
Hpy188I	TCNGA	3 cut(s)	27, 441, 489
Hpy188III	TCNNGA	3 cut(s)	128, 350, 512
Hpy8I	GTNNAC	2 cut(s)	38, 57
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	190, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 422
HpyF3I	CTNAG	2 cut(s)	212, 438
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	148, 346
HspAI	GCGC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	261, 301, 325, 364
LmnI	GCTCC	1 cut(s)	492
Lsp1109I	GCAGC	2 cut(s)	271, 400
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	529
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	266, 354
MalI	GATC	4 cut(s)	263, 303, 327, 366
MboI	GATC	4 cut(s)	261, 301, 325, 364
MboII	GAAGA	2 cut(s)	114, 320
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	3 cut(s)	87, 253, 483
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	6 cut(s)	38, 43, 130, 435, 479, 483
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	230
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	2 cut(s)	240, 506
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	419, 422
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	261, 301, 325, 364
NlaIII	CATG	2 cut(s)	148, 346
NlaIV	GGNNCC	1 cut(s)	503
NmuCI	GTSAC	2 cut(s)	266, 354
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	286, 415, 424
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	285, 414, 423
Sau3AI	GATC	4 cut(s)	261, 301, 325, 364
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	240, 506
SetI	ASST	4 cut(s)	236, 244, 286, 406
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	2 cut(s)	308, 378
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	3 cut(s)	87, 253, 483
SsiI	CCGC	4 cut(s)	93, 117, 423, 499
SspMI	CTAG	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	238, 504
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	511
TasI	AATT	3 cut(s)	87, 253, 483
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	266, 354
TseI	GCWGC	2 cut(s)	284, 413
Tsp45I	GTSAC	2 cut(s)	266, 354
TspDTI	ATGAA	2 cut(s)	11, 129
TspRI	CASTG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.