Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004999

Physical Location & Seq

Genomic Coordinates Reverse (-)

18363272 .. 18364113

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGTGTTCTTTCACTTTCCATTGTCAGGGTTGTGCTCTCTTAACCGTATTCAACATTGTAGGGCAAGCGATGGGACTTCTGTTGGAACATGAATATGTTTCTGTTAGTAAGCTGTCTGAAACACAAAAGGCATGCTACCTATCACCTCAGTCCACTCGCTTTTATCTTTTTTCTGTTGCTGATGGCCACCACCTGGTCATTTCTGCATTTGACCACTGGGAAGAAGTAGTCCTGTTTGAAGATGAAGCCTCTCTTATAGCTGCATCTTCCAACTTCACTAATGTTCTTCACACATCGAGCTCACCAAGGGCAGAGGATCTTGACGGAAGCAAGTTTTTGGCTTCACAAAAGATTGGTGGATTTGATTATGCACAGCCATCTGCCTCTTCTCCAGATATCATCTCATCCATCTATTCCGTGGGTAGCACCAGTGGCTTGGATGATTATGCCTTGCACAACATTGACGGCTTCGGTCTTAGATATGATCAGCTTCTGAGTTTCCCAGGTCAAGTCACCAACTCCCTGATGTTTGACACCGACCCCATGGCTCATGCTTTATTTGTTGAGGATCATCTGCAGTTTTCCGATGCTGATCTTCAGTCCCAGAACATGAGTTCAGAACCACAAGATCTACATAGCGCTGTGGATCGCTTCTTGCCGAGTTCAGCTGTTGCCATATCTGATAAGGCTCAGAGGGGATGGACAAAGCTATTCAGTGTGCTGCAGTGGTTCTCAATATGGAGGATCGTGGCTTTGAAACGAAGAGTTCAAGATATTCAGAGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0008150 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0065007 GO:0080134 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

264

Amino Acids

29.29

Weight (kDa)

4.87

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62570 AT5G62570 AT5G62570 AT5G62570
fragaria_vesca	FvH4_5g16470
malus_domestica	MD06G1180400.v1.1 MD14G1185500.v1.1
prunus_persica	Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1 Prupe.5G178300_v2.0.a1
pyrus_communis	pycom06g15980 pycom14g15440 pycom14g15900
rosa_chinensis	RchiOBHm_Chr7g0179621
rosa_laevigata	RLG00000005336
rosa_multiflora	Rmu_co8246235.1_g000001 Rmu_sc0005329.1_g000026
rosa_roxburghii	Rroxscaffold_155G00443860 Rroxscaffold_3G00273590
rosa_rugosa	Rorug06G0426700
rosa_samantha	Rh7AG026100 Rh7BG025300 Rh7CG027400 Rh7DG026900
rosa_wichuraiana	Rw7G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AclWI	GGATC	4 cut(s)	327, 579, 657, 755
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	584
AfeI	AGCGCT	1 cut(s)	643
AfiI	CCNNNNNNNGG	2 cut(s)	28, 196
AgsI	TTSAA	4 cut(s)	55, 242, 760, 773
AjnI	CCWGG	2 cut(s)	195, 505
AluBI	AGCT	6 cut(s)	115, 263, 303, 493, 671, 712
AluI	AGCT	6 cut(s)	115, 263, 303, 493, 671, 712
Alw21I	GWGCWC	2 cut(s)	40, 305
AlwI	GGATC	4 cut(s)	327, 579, 657, 755
AlwNI	CAGNNNCTG	1 cut(s)	496
Aor51HI	AGCGCT	1 cut(s)	643
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	263, 724
AspLEI	GCGC	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	138, 297, 508
BalI	TGGCCA	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	40, 305
BbvI	GCAGC	2 cut(s)	250, 711
BccI	CCATC	5 cut(s)	67, 179, 388, 419, 696
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	2 cut(s)	197, 507
BclI	TGATCA	1 cut(s)	487
BfaI	CTAG	1 cut(s)	790
BfmI	CTRYAG	2 cut(s)	578, 725
BfoI	RGCGCY	1 cut(s)	645
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	2 cut(s)	264, 725
BlsI	GCNGC	2 cut(s)	265, 726
Bme1390I	CCNGG	2 cut(s)	197, 507
BmrFI	CCNGG	2 cut(s)	197, 507
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	275, 580
BmuI	ACTGGG	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	308, 420, 505, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 196
Bse1I	ACTGG	2 cut(s)	224, 432
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	197, 507
BseDI	CCNNGG	4 cut(s)	308, 420, 505, 546
BseGI	GGATG	3 cut(s)	407, 448, 707
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	28, 196
BseMII	CTCAG	3 cut(s)	164, 488, 707
BseNI	ACTGG	2 cut(s)	224, 432
BseXI	GCAGC	2 cut(s)	250, 711
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	40, 305
BslFI	GGGAC	2 cut(s)	90, 589
BslI	CCNNNNNNNGG	2 cut(s)	28, 196
BsmFI	GGGAC	2 cut(s)	90, 589
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	40, 305
Bsp143I	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	3 cut(s)	163, 489, 706
BspMAI	CTGCAG	2 cut(s)	582, 729
BspPI	GGATC	4 cut(s)	327, 579, 657, 755
BsrI	ACTGG	2 cut(s)	224, 432
BssECI	CCNNGG	4 cut(s)	308, 420, 505, 546
BssMI	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
BssT1I	CCWWGG	2 cut(s)	308, 546
Bst2UI	CCWGG	2 cut(s)	197, 507
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	394, 760
BstC8I	GCNNGC	2 cut(s)	69, 136
BstDEI	CTNAG	4 cut(s)	150, 479, 497, 693
BstDSI	CCRYGG	2 cut(s)	420, 546
BstF5I	GGATG	3 cut(s)	407, 448, 707
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	7 cut(s)	322, 490, 574, 598, 634, 652, 750
BstMBI	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	2 cut(s)	197, 507
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	195, 505
BstSFI	CTRYAG	2 cut(s)	578, 725
BstV1I	GCAGC	2 cut(s)	250, 711
BstX2I	RGATCY	2 cut(s)	319, 631
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	2 cut(s)	319, 631
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	2 cut(s)	420, 546
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	407, 448, 707
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	4 cut(s)	217, 439, 724, 734
Cac8I	GCNNGC	2 cut(s)	69, 136
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	1 cut(s)	644
CsiI	ACCWGGT	1 cut(s)	195
CviAII	CATG	5 cut(s)	92, 135, 547, 554, 613
DdeI	CTNAG	4 cut(s)	150, 479, 497, 693
DpnI	GATC	7 cut(s)	321, 489, 573, 597, 633, 651, 749
DpnII	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	394, 760
EarI	CTCTTC	2 cut(s)	394, 760
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	308, 546
Eco24I	GRGCYC	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	400
Eco47III	AGCGCT	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	195, 505
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	308, 546
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	308, 546
FaeI	CATG	5 cut(s)	95, 138, 550, 557, 616
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	2 cut(s)	90, 589
FatI	CATG	5 cut(s)	91, 134, 546, 553, 612
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	264, 725
FokI	GGATG	3 cut(s)	394, 455, 714
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	264, 725
FspBI	CTAG	1 cut(s)	790
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	2 cut(s)	264, 725
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	5 cut(s)	95, 138, 550, 557, 616
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HphI	GGTGA	3 cut(s)	138, 297, 508
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	7 cut(s)	121, 498, 589, 622, 685, 696, 783
Hpy188III	TCNNGA	3 cut(s)	323, 395, 773
Hpy8I	GTNNAC	1 cut(s)	156
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	209, 266, 374, 457, 580, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	4 cut(s)	150, 479, 497, 693
Hsp92II	CATG	5 cut(s)	95, 138, 550, 557, 616
HspAI	GCGC	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
Lsp1109I	GCAGC	2 cut(s)	250, 711
LweI	GCATC	2 cut(s)	275, 580
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	1 cut(s)	790
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	7 cut(s)	321, 489, 573, 597, 633, 651, 749
MboI	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
MboII	GAAGA	7 cut(s)	236, 254, 261, 281, 381, 590, 777
MflI	RGATCY	2 cut(s)	319, 631
MhlI	GDGCHC	2 cut(s)	40, 305
MlsI	TGGCCA	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	66, 297
MnlI	CCTC	7 cut(s)	159, 262, 310, 397, 562, 690, 738
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	197, 507
MvaI	CCWGG	2 cut(s)	197, 507
MwoI	GCNNNNNNNGC	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
NlaIII	CATG	5 cut(s)	95, 138, 550, 557, 616
NmeAIII	GCCGAG	1 cut(s)	687
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	265, 726
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	195, 505
PspGI	CCWGG	2 cut(s)	195, 505
PstI	CTGCAG	2 cut(s)	582, 729
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	319, 631
PvuII	CAGCTG	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	2 cut(s)	264, 725
Sau3AI	GATC	7 cut(s)	319, 487, 571, 595, 631, 649, 747
ScrFI	CCNGG	2 cut(s)	197, 507
SduI	GDGCHC	2 cut(s)	40, 305
SexAI	ACCWGGT	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	275, 580
SfcI	CTRYAG	2 cut(s)	578, 725
SmiMI	CAYNNNNRTG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	790
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	195, 505
StyI	CCWWGG	2 cut(s)	308, 546
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	299
TaqII	GACCGA	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	4 cut(s)	224, 439, 724, 734
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	2 cut(s)	263, 724
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	108, 261
TspGWI	ACGGA	2 cut(s)	342, 409
TspRI	CASTG	4 cut(s)	224, 439, 724, 734
Van91I	CCANNNNNTGG	1 cut(s)	196
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XspI	CTAG	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.