MD14G1189000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
28069524 .. 28071218
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1189000.v1.1.491

Sequence Viewer

Length: 177 bp
ATGGGGATAGTGAGCAAGGCAGGGGATTGGGCATTCAAGGCGTTCACGGCGGGGCTCGGCGTCACCACTTTATACCTCACCGCCACTTTCTCCGCCAATGTCTACAAAGGCCTCGCCTGGCACAAAGCTCAATCGAAAATCGAGAAAGAGGGTGCTTCTGCTGAGCAAGCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.12

Weight (kDa)

9.16

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016932)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AciI CCGC 3 cut(s) 50, 81, 93
AcyI GRCGYC 1 cut(s) 60
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 55, 70
BanII GRGCYC 1 cut(s) 57
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 118
BlpI GCTNAGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 3 cut(s) 50, 81, 93
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 167
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 168
CseI GACGC 1 cut(s) 49
CviJI RGCY 4 cut(s) 55, 111, 128, 170
CviKI_1 RGCY 4 cut(s) 55, 111, 128, 170
DdeI CTNAG 1 cut(s) 162
EciI GGCGGA 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 57
FaiI YATR 1 cut(s) 73
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 111
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 60
HphI GGTGA 2 cut(s) 55, 70
Hpy166II GTNNAC 2 cut(s) 45, 103
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 2 cut(s) 45, 103
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 167
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 6, 103, 130
MaeIII GTNAC 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 57
MnlI CCTC 3 cut(s) 86, 122, 142
MseI TTAA 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 167
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 61
PceI AGGCCT 1 cut(s) 111
PctI GAATGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 57
SetI ASST 2 cut(s) 78, 130
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 3 cut(s) 50, 81, 93
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 116
TaqI TCGA 2 cut(s) 134, 141
Tru1I TTAA 1 cut(s) 175
Tru9I TTAA 1 cut(s) 175
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.