RLG00000036300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016932
Physical Location & Seq
Forward (+)
78620073 .. 78620411
339 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036300

Sequence Viewer

Length: 339 bp
ATGGGGATAGTGGCTAAGACAGGGGATTGGGCATGCAAGGCATTCAAGGCCGGGGGTTACCACCATCTACCTCACTGGCACTTTATCTTTAAATGTCTACACTCTACAGAGGCACCGCTTGGCACAAAGCTCAGCCGAAAATCGAGTATGAGGATGAACAAGCCTCATAATTTTGAGCTTTCGCGGCTGGCTGAGATCCTATTCTCTCGGAAAGTTGCAGCATTGATTTTTTTCTTATACGTTCTTTATGTTATAGATCTTGGACCGATTGGCTTACCACATCCAGTTGTGATACAGAGCTTTGTGGTTTCGATACGACACATTGAAATACTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.72

Weight (kDa)

9.8

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016932)

Species Orthologous Gene IDs
malus_domestica MD14G1189000.v1.1
prunus_persica Prupe.5G181400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179931
rosa_laevigata RLG00000036300
rosa_roxburghii Rroxscaffold_3G00273300
rosa_samantha Rh4AG024300 Rh4AG151300 Rh4DG144300 Rh6AG081700 Rh7AG029700 Rh7BG028900 Rh7CG030500 Rh7DG029900
rosa_wichuraiana Rw7G002360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 97
AccII CGCG 1 cut(s) 184
AciI CCGC 2 cut(s) 116, 184
AclWI GGATC 1 cut(s) 190
AgsI TTSAA 2 cut(s) 46, 326
AluBI AGCT 3 cut(s) 130, 178, 300
AluI AGCT 3 cut(s) 130, 178, 300
AlwI GGATC 1 cut(s) 190
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 1 cut(s) 337
BfmI CTRYAG 1 cut(s) 105
BglII AGATCT 1 cut(s) 256
BisI GCNGC 2 cut(s) 185, 219
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 186, 220
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 52
Bpu1102I GCTNAGC 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 80, 284
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 159, 280
BseMII CTCAG 2 cut(s) 145, 183
BseNI ACTGG 2 cut(s) 80, 284
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 51
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 195, 256
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 2 cut(s) 116, 184
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 144, 184
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 112
BsrI ACTGG 2 cut(s) 80, 284
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 195, 256
BstC8I GCNNGC 2 cut(s) 34, 189
BstDEI CTNAG 3 cut(s) 15, 131, 192
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 2 cut(s) 159, 280
BstFNI CGCG 1 cut(s) 184
BstKTI GATC 2 cut(s) 198, 259
BstMBI GATC 2 cut(s) 195, 256
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 184
BstNSI RCATGY 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 2 cut(s) 195, 256
BstYI RGATCY 2 cut(s) 195, 256
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 159, 280
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 34, 189
Cfr13I GGNCC 1 cut(s) 263
CviAII CATG 1 cut(s) 33
DdeI CTNAG 3 cut(s) 15, 131, 192
DpnI GATC 2 cut(s) 197, 258
DpnII GATC 2 cut(s) 195, 256
DraI TTTAAA 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
FaeI CATG 1 cut(s) 36
FaiI YATR 6 cut(s) 34, 149, 168, 238, 249, 254
FatI CATG 1 cut(s) 32
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 185, 219
FokI GGATG 2 cut(s) 166, 267
Fsp4HI GCNGC 2 cut(s) 185, 219
FspBI CTAG 1 cut(s) 337
GluI GCNGC 2 cut(s) 185, 219
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 51
Hin1II CATG 1 cut(s) 36
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 36, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 184
HpyF3I CTNAG 3 cut(s) 15, 131, 192
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 36
Kzo9I GATC 2 cut(s) 195, 256
LpnPI CCDG 5 cut(s) 6, 61, 64, 173, 297
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 1 cut(s) 337
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 197, 258
MboI GATC 2 cut(s) 195, 256
MflI RGATCY 2 cut(s) 195, 256
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 81, 103, 144, 174
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 1 cut(s) 90
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 41
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 184
NciI CCSGG 1 cut(s) 52
NdeII GATC 2 cut(s) 195, 256
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 114
NspI RCATGY 1 cut(s) 36
PaeI GCATGC 1 cut(s) 36
PctI GAATGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 186, 220
PspEI GGTNACC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 2 cut(s) 195, 256
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 185, 219
Sau3AI GATC 2 cut(s) 195, 256
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 52
SetI ASST 5 cut(s) 73, 132, 180, 243, 302
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 263
SphI GCATGC 1 cut(s) 36
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 116, 184
SspMI CTAG 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 143, 311
TaqII GACCGA 1 cut(s) 280
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 263
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.