Rroxscaffold_3G00273300

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
65118390 .. 65118587
198 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00273300.1

Sequence Viewer

Length: 198 bp
ATGGGGATAGTGGCTAAGGCAGGGGATTGGGCGTTCAAGGCATTCACGGCGGGGCTGGGAGTCACCACCATCTATCTCACCGGCACTTTCTCTTTAAATGTCTACAGAGGCATCGCTTGGCACAAAGCTCAGCCGGTAAACCCTTCTTTCTCTAAACCTTTCTTGGGTTTACATCATACTTGTAGTTATGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.06

Weight (kDa)

9.66

Isoelectric Point (pI)

10.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016932)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AciI CCGC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 37
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 55, 70
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 103
BlpI GCTNAGC 1 cut(s) 129
BmsI GCATC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 2 cut(s) 80, 133
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 81, 134
BslI CCNNNNNNNGG 1 cut(s) 164
BsmI GAATGC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 192
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 142
BsrFI RCCGGY 2 cut(s) 80, 133
BssAI RCCGGY 2 cut(s) 80, 133
BssMI GATC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 15, 129
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstSFI CTRYAG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 97
Cfr10I RCCGGY 2 cut(s) 80, 133
CviJI RGCY 4 cut(s) 14, 55, 128, 133
CviKI_1 RGCY 4 cut(s) 14, 55, 128, 133
DdeI CTNAG 2 cut(s) 15, 129
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraI TTTAAA 1 cut(s) 96
FaiI YATR 2 cut(s) 177, 189
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 102
GsaI CCCAGC 1 cut(s) 59
HapII CCGG 2 cut(s) 81, 134
HinfI GANTC 1 cut(s) 60
HpaII CCGG 2 cut(s) 81, 134
HphI GGTGA 2 cut(s) 55, 70
Hpy166II GTNNAC 3 cut(s) 103, 139, 170
Hpy8I GTNNAC 3 cut(s) 103, 139, 170
HpyAV CCTTC 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 2 cut(s) 15, 129
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 4 cut(s) 6, 41, 94, 147
LweI GCATC 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 1 cut(s) 101
MseI TTAA 1 cut(s) 95
MspI CCGG 2 cut(s) 81, 134
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NdeII GATC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 61
PctI GAATGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 95
Sau3AI GATC 1 cut(s) 192
SchI GAGTC 1 cut(s) 69
SetI ASST 2 cut(s) 130, 160
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 103
SsiI CCGC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.