Rw7G002360

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
1936879 .. 1944202
7324 bp
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UTR
Exon/CDS
Intron
Rw7G002360.1

Sequence Viewer

Length: 168 bp
ATGGGGATAGTGGCAAAGGCAGGGGATTGGGCGTTCAAGGCATTCACGGCGGGGCTGGGAGTCACCACCATCTATCTCACCGGCACTTTCTCTTTAAATGTCTACAGAGGCATCGCTTGGCACAAAGCTCAGCCGAAAATCGAGTATGAGGATGAACAAGCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.02

Weight (kDa)

6.53

Isoelectric Point (pI)

15.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016932)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AciI CCGC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 37
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 55, 70
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 103
BlpI GCTNAGC 1 cut(s) 129
BmsI GCATC 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 80
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 81
BsmI GAATGC 1 cut(s) 41
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstSFI CTRYAG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 80
CviJI RGCY 4 cut(s) 55, 128, 133, 161
CviKI_1 RGCY 4 cut(s) 55, 128, 133, 161
DdeI CTNAG 1 cut(s) 129
DraI TTTAAA 1 cut(s) 96
FaiI YATR 2 cut(s) 147, 166
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 102
FokI GGATG 1 cut(s) 164
GsaI CCCAGC 1 cut(s) 59
HapII CCGG 1 cut(s) 81
HinfI GANTC 1 cut(s) 60
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 55, 70
Hpy166II GTNNAC 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 1 cut(s) 129
LpnPI CCDG 3 cut(s) 6, 41, 94
LweI GCATC 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 61
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 2 cut(s) 101, 142
MseI TTAA 1 cut(s) 95
MspI CCGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NmuCI GTSAC 1 cut(s) 61
PctI GAATGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 95
SchI GAGTC 1 cut(s) 69
SetI ASST 1 cut(s) 130
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 103
SgeI CNNG 8 cut(s) 33, 49, 58, 63, 68, 93, 129, 154
SsiI CCGC 1 cut(s) 50
TaqI TCGA 1 cut(s) 141
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.