Rh7BG028900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
1978206 .. 1979365
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG028900.1

Sequence Viewer

Length: 159 bp
ATGTCTACAGAGGCATCGCTTGGCACAAAGCTCAGCCGAAAATCGAGTATGAGGATGAACAAGCCTCATAAGTCTGAGCTTTCACAGCTGGCTGGGATCCTATTCTCTGGGAAAGTTGCAGCATTGATTTTTTCCTATACGTTTTATATCTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.77

Weight (kDa)

10.12

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016932)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 2 cut(s) 91, 104
AluBI AGCT 3 cut(s) 31, 79, 88
AluI AGCT 3 cut(s) 31, 79, 88
AlwI GGATC 2 cut(s) 91, 104
ApeKI GCWGC 1 cut(s) 119
BamHI GGATCC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 32
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 46, 66
BseXI GCAGC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 96
Bsp1720I GCTNAGC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 45, 67
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 2 cut(s) 91, 104
BssMI GATC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 32, 75
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 90
CviJI RGCY 6 cut(s) 31, 36, 64, 79, 88, 92
CviKI_1 RGCY 6 cut(s) 31, 36, 64, 79, 88, 92
DdeI CTNAG 2 cut(s) 32, 75
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
FaiI YATR 4 cut(s) 50, 69, 138, 147
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 32, 75
HpySE526I ACGT 1 cut(s) 140
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 74, 78, 93
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 23
MaeII ACGT 1 cut(s) 140
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MflI RGATCY 1 cut(s) 96
MnlI CCTC 3 cut(s) 4, 45, 75
MspA1I CMGCKG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 88
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 96
SetI ASST 4 cut(s) 33, 81, 90, 143
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 6
SgeI CNNG 6 cut(s) 32, 57, 73, 101, 105, 120
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 44
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.