Rh7CG030500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016932
Physical Location & Seq
Reverse (-)
2148747 .. 2152137
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG030500.1

Sequence Viewer

Length: 1104 bp
ATGGGGATAGTGGCTAAGGCAGGGGATTGGGCGTTCAAGGCATTCACGGCGGGGCTGGGAGTCACCACCATCTATCTCACCGGCACTTTCTCTTTAAATGTCTACAGAGGCATCGCTTGGCACAAAGCTCAGCCGAGTAAAGGTAAACGGAGGAAATTCGTCCGAGTGGAAGATCCAGTAGAGAACAAAATAGACATATTCATCCTGTGCTCCGATATTTACTCAAGTAGCTTTCATGGATTTGTCCTTGTTCATTCTCTCCAACTGCTCAAAAGGACTAATTTTGTTGTACCATCTATGTTCAGCTCCGTCCATAACAAGAAGATGATAAACCAGGCAGCAGAAGAAGAAGCAACGTCTCTTTATATCATGATGCAATATGAGCACGGCCCGCACTTTGGATCGTTGTATGAATTTTATTTATGCAAGCAAGACTCCTTTCGACCTTTTCGACCTTTAGCACAGTTCAGGGAAAAGGATATTAGCCTTCCATTAAGTTGGAAATTTTGCTCCTTGGATACCGACAACATATGTCTATTCCCAGATAGTGGTCCTTTACCTCCTGATGATGTGGTGAATCCCTTGTCTGGATATATGTTCAATGTCGATACCAAGAAATGTCATTTAATCAAGCCGCCCGTTGCTCCCAAATGGGACGGACCTGTTGTATCTGCATATGGGAAACTTTACTCTATCACGGTTCCATACTGCTCATCTGATGTGCCAGAGCCCTCTTTCGAGCGATATGATCCTTACAGCTGTTGTTGGGAAACTCAGAAATCTTTTCCTTATGGTAAAGATTGGTCCAAACGAAGGATCGGGGGTCATGCCGTTTGTGATGGACTCATCCTGTATAATATAATCTCTTCTGTTGGACTCATTCTGGAGGATAATCCATTCTCTTGCTCTAGAAAATATCAAGATGAACTGTGGGCTTATGATGTAACACTGGATGAATGGCTTCCAGTTAGGGTCGAGAACACAGATTGCTATAGTTTCCGAGGACCGGCTGTATGTGCGGACAAGACTAGGCGTTATCAAGCAGCTTGGCGGTTATGGCACTCTCTATCACAAGGCATGAAAATCTTGTTACCTGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

41.9

Weight (kDa)

8.16

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016932)

Species Orthologous Gene IDs
malus_domestica MD14G1189000.v1.1
prunus_persica Prupe.5G181400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179931
rosa_laevigata RLG00000036300
rosa_roxburghii Rroxscaffold_3G00273300
rosa_samantha Rh4AG024300 Rh4AG151300 Rh4DG144300 Rh6AG081700 Rh7AG029700 Rh7BG028900 Rh7CG030500 Rh7DG029900
rosa_wichuraiana Rw7G002360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 548
AccI GTMKAC 1 cut(s) 102
AciI CCGC 5 cut(s) 50, 392, 635, 1019, 1051
AclWI GGATC 4 cut(s) 167, 409, 743, 824
AcsI RAATTY 3 cut(s) 155, 413, 503
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 6 cut(s) 140, 398, 548, 587, 813, 1006
AgsI TTSAA 2 cut(s) 37, 601
AjnI CCWGG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 128, 231, 306, 759, 1046
AluI AGCT 5 cut(s) 128, 231, 306, 759, 1046
Alw21I GWGCWC 2 cut(s) 212, 387
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 4 cut(s) 167, 409, 743, 824
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 338, 1043
ApoI RAATTY 3 cut(s) 155, 413, 503
Asp700I GAANNNNTTC 1 cut(s) 960
AspS9I GGNCC 5 cut(s) 389, 551, 659, 804, 1004
AsuHPI GGTGA 3 cut(s) 55, 70, 586
AvaII GGWCC 4 cut(s) 551, 659, 804, 1004
BanII GRGCYC 1 cut(s) 732
Bbv12I GWGCWC 2 cut(s) 212, 387
BbvI GCAGC 2 cut(s) 350, 1055
BccI CCATC 3 cut(s) 77, 301, 833
BceAI ACGGC 3 cut(s) 63, 403, 815
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 2 cut(s) 909, 1029
BfmI CTRYAG 2 cut(s) 103, 991
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 3 cut(s) 339, 635, 1044
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 3 cut(s) 340, 636, 1045
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 4 cut(s) 551, 659, 804, 1004
BmgT120I GGNCC 5 cut(s) 389, 551, 659, 804, 1004
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 120, 363
BpmI CTGGAG 1 cut(s) 905
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 513, 1000
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 398, 548, 587, 813, 1006
Bse118I RCCGGY 2 cut(s) 80, 1006
Bse1I ACTGG 3 cut(s) 176, 954, 965
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 513, 1000
BseGI GGATG 3 cut(s) 201, 846, 958
BseLI CCNNNNNNNGG 6 cut(s) 140, 398, 548, 587, 813, 1006
BseMII CTCAG 2 cut(s) 143, 788
BseNI ACTGG 3 cut(s) 176, 954, 965
BseXI GCAGC 2 cut(s) 350, 1055
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 212, 387
BsiSI CCGG 2 cut(s) 81, 1007
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 6 cut(s) 140, 398, 548, 587, 813, 1006
BsmAI GTCTC 1 cut(s) 363
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 668
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 390
Bsp1286I GDGCHC 3 cut(s) 212, 387, 732
Bsp143I GATC 4 cut(s) 172, 401, 748, 816
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 5 cut(s) 50, 392, 635, 1019, 1051
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 142, 787
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 702
BspPI GGATC 4 cut(s) 167, 409, 743, 824
BsrFI RCCGGY 2 cut(s) 80, 1006
BsrI ACTGG 3 cut(s) 176, 954, 965
BssAI RCCGGY 2 cut(s) 80, 1006
BssECI CCNNGG 2 cut(s) 513, 1000
BssMI GATC 4 cut(s) 172, 401, 748, 816
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 3 cut(s) 465, 700, 930
Bst6I CTCTTC 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 392, 428
BstDEI CTNAG 3 cut(s) 15, 129, 774
BstF5I GGATG 3 cut(s) 201, 846, 958
BstKTI GATC 4 cut(s) 175, 404, 751, 819
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 4 cut(s) 172, 401, 748, 816
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 382, 391, 1016, 1057
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 2 cut(s) 103, 991
BstV1I GCAGC 2 cut(s) 350, 1055
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 498
BstYI RGATCY 1 cut(s) 172
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 3 cut(s) 201, 846, 958
BtsIMutI CAGTG 1 cut(s) 947
Cac8I GCNNGC 2 cut(s) 392, 428
CciI TCATGA 1 cut(s) 369
Cfr10I RCCGGY 2 cut(s) 80, 1006
Cfr13I GGNCC 5 cut(s) 389, 551, 659, 804, 1004
Csp6I GTAC 1 cut(s) 290
CviAII CATG 4 cut(s) 236, 370, 827, 1078
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 3 cut(s) 15, 129, 774
DpnI GATC 4 cut(s) 174, 403, 750, 818
DpnII GATC 4 cut(s) 172, 401, 748, 816
DraI TTTAAA 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 871
EarI CTCTTC 1 cut(s) 871
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 732
Eco47I GGWCC 4 cut(s) 551, 659, 804, 1004
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 513
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 4 cut(s) 239, 373, 830, 1081
FaqI GGGAC 1 cut(s) 668
FatI CATG 4 cut(s) 235, 369, 826, 1077
FauI CCCGC 2 cut(s) 43, 399
FauNDI CATATG 2 cut(s) 530, 676
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 339, 635, 1044
FokI GGATG 3 cut(s) 188, 833, 965
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 3 cut(s) 339, 635, 1044
FspBI CTAG 2 cut(s) 909, 1029
GluI GCNGC 3 cut(s) 339, 635, 1044
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 1 cut(s) 390
HapII CCGG 2 cut(s) 81, 1007
Hin1II CATG 4 cut(s) 239, 373, 830, 1081
HinfI GANTC 5 cut(s) 60, 434, 577, 843, 876
HpaII CCGG 2 cut(s) 81, 1007
HphI GGTGA 3 cut(s) 55, 70, 586
Hpy166II GTNNAC 2 cut(s) 103, 146
Hpy188I TCNGA 5 cut(s) 164, 214, 718, 777, 1001
Hpy188III TCNNGA 7 cut(s) 370, 563, 588, 884, 909, 920, 976
Hpy8I GTNNAC 2 cut(s) 103, 146
HpyAV CCTTC 2 cut(s) 497, 807
HpyCH4III ACNGT 3 cut(s) 465, 700, 930
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 376, 426, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 382, 391, 1016, 1057
HpyF3I CTNAG 3 cut(s) 15, 129, 774
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 4 cut(s) 239, 373, 830, 1081
Kzo9I GATC 4 cut(s) 172, 401, 748, 816
LmnI GCTCC 4 cut(s) 215, 311, 515, 649
Lsp1109I GCAGC 2 cut(s) 350, 1055
LweI GCATC 2 cut(s) 120, 363
MaeI CTAG 2 cut(s) 909, 1029
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 3 cut(s) 61, 943, 1089
MalI GATC 4 cut(s) 174, 403, 750, 818
MboI GATC 4 cut(s) 172, 401, 748, 816
MboII GAAGA 5 cut(s) 182, 334, 356, 359, 858
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 3 cut(s) 212, 387, 732
MluCI AATT 4 cut(s) 155, 280, 413, 503
MlyI GAGTC 4 cut(s) 69, 428, 837, 870
MmeI TCCRAC 3 cut(s) 286, 479, 853
MnlI CCTC 6 cut(s) 101, 144, 570, 742, 880, 995
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 3 cut(s) 95, 494, 626
MspA1I CMGCKG 1 cut(s) 759
MspI CCGG 2 cut(s) 81, 1007
MspR9I CCNGG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 382, 391, 1016, 1057
NdeI CATATG 2 cut(s) 530, 676
NdeII GATC 4 cut(s) 172, 401, 748, 816
NlaIII CATG 4 cut(s) 239, 373, 830, 1081
NlaIV GGNNCC 1 cut(s) 702
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PctI GAATGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 1 cut(s) 577
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 3 cut(s) 340, 636, 1045
PleI GAGTC 4 cut(s) 68, 428, 837, 870
PpsI GAGTC 4 cut(s) 68, 428, 837, 870
Psp6I CCWGG 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 5 cut(s) 389, 551, 659, 804, 1004
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 759
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 95, 494, 626
SatI GCNGC 3 cut(s) 339, 635, 1044
Sau3AI GATC 4 cut(s) 172, 401, 748, 816
Sau96I GGNCC 5 cut(s) 389, 551, 659, 804, 1004
SchI GAGTC 4 cut(s) 69, 428, 837, 870
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 3 cut(s) 212, 387, 732
SfaNI GCATC 2 cut(s) 120, 363
SfcI CTRYAG 2 cut(s) 103, 991
SinI GGWCC 4 cut(s) 551, 659, 804, 1004
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 4 cut(s) 155, 280, 413, 503
SsiI CCGC 5 cut(s) 50, 392, 635, 1019, 1051
SspMI CTAG 2 cut(s) 909, 1029
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 465, 700, 930
TaiI ACGT 1 cut(s) 359
TaqI TCGA 5 cut(s) 442, 451, 606, 738, 975
TasI AATT 4 cut(s) 155, 280, 413, 503
TauI GCSGC 1 cut(s) 637
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 3 cut(s) 95, 494, 626
Tru9I TTAA 3 cut(s) 95, 494, 626
TscAI CASTG 1 cut(s) 954
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 338, 1043
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 7 cut(s) 190, 224, 242, 426, 939, 969, 1094
TspGWI ACGGA 3 cut(s) 163, 298, 672
TspRI CASTG 1 cut(s) 954
Van91I CCANNNNNTGG 1 cut(s) 548
VpaK11BI GGWCC 4 cut(s) 551, 659, 804, 1004
XapI RAATTY 3 cut(s) 155, 413, 503
XbaI TCTAGA 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 2 cut(s) 909, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.