Rh4AG151300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016932
Physical Location & Seq
Reverse (-)
38290647 .. 38290991
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG151300.1

Sequence Viewer

Length: 345 bp
ATGGGGATAGTGGCTAAGGCAGGGGATTGGGCATGCAAGGCATTCAAGGCCGGGGGTTACCACCATCTACCTCACTGGCACCTTATCTTTAAACGTCTACACTCTACAGAGGCACCGCCTGGCACAAAGCTCAGCCGAAAATCGAGTATGAGGATGAACGAGCCTCATAATTTTGAGCTTTCGCGGCTGGCTGAGATCCTATTCTCTCGGAAAGTTGCAGCATTGATTTTTTTCTTATACGTTTTATATCTTGATGTTATAGATCTTGGACCGATTGGCTTACCACATCCAGTTGTGATGCGGAGCTTTGTGGTTTCGATACGACACATTGAAATACTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

9.84

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016932)

Species Orthologous Gene IDs
malus_domestica MD14G1189000.v1.1
prunus_persica Prupe.5G181400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179931
rosa_laevigata RLG00000036300
rosa_roxburghii Rroxscaffold_3G00273300
rosa_samantha Rh4AG024300 Rh4AG151300 Rh4DG144300 Rh6AG081700 Rh7AG029700 Rh7BG028900 Rh7CG030500 Rh7DG029900
rosa_wichuraiana Rw7G002360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 112
AccI GTMKAC 1 cut(s) 97
AccII CGCG 1 cut(s) 184
AciI CCGC 3 cut(s) 116, 184, 301
AclWI GGATC 1 cut(s) 190
AgsI TTSAA 2 cut(s) 46, 332
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 130, 178, 306
AluI AGCT 3 cut(s) 130, 178, 306
AlwI GGATC 1 cut(s) 190
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 269
BanI GGYRCC 2 cut(s) 78, 112
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 105
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 185, 219
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 186, 220
Bme1390I CCNGG 2 cut(s) 52, 120
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 80, 114
BmrFI CCNGG 2 cut(s) 52, 120
BmsI GCATC 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 80, 290
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 159, 286
BseMII CTCAG 2 cut(s) 145, 183
BseNI ACTGG 2 cut(s) 80, 290
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 78, 112
BsiSI CCGG 1 cut(s) 51
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 195, 262
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 3 cut(s) 116, 184, 301
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 144, 184
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 80, 114
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 2 cut(s) 78, 112
BsrI ACTGG 2 cut(s) 80, 290
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 195, 262
Bst2UI CCWGG 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 34, 189
BstDEI CTNAG 3 cut(s) 15, 131, 192
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 2 cut(s) 159, 286
BstFNI CGCG 1 cut(s) 184
BstKTI GATC 2 cut(s) 198, 265
BstMBI GATC 2 cut(s) 195, 262
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 184
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 50, 118
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 2 cut(s) 195, 262
BstYI RGATCY 2 cut(s) 195, 262
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 159, 286
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 34, 189
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 1 cut(s) 33
DdeI CTNAG 3 cut(s) 15, 131, 192
DpnI GATC 2 cut(s) 197, 264
DpnII GATC 2 cut(s) 195, 262
DraI TTTAAA 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 36
FaiI YATR 6 cut(s) 34, 149, 168, 238, 247, 260
FatI CATG 1 cut(s) 32
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 185, 219
FokI GGATG 2 cut(s) 166, 273
Fsp4HI GCNGC 2 cut(s) 185, 219
FspBI CTAG 1 cut(s) 343
GluI GCNGC 2 cut(s) 185, 219
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 51
Hin1II CATG 1 cut(s) 36
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 94, 240
HpyCH4V TGCA 2 cut(s) 36, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 184
HpyF3I CTNAG 3 cut(s) 15, 131, 192
HpySE526I ACGT 2 cut(s) 94, 240
Hsp92II CATG 1 cut(s) 36
Kzo9I GATC 2 cut(s) 195, 262
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 7 cut(s) 6, 61, 64, 105, 132, 173, 303
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 343
MaeII ACGT 2 cut(s) 94, 240
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 197, 264
MboI GATC 2 cut(s) 195, 262
MflI RGATCY 2 cut(s) 195, 262
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 81, 103, 144, 174
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 1 cut(s) 90
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 120
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 184
NciI CCSGG 1 cut(s) 52
NdeII GATC 2 cut(s) 195, 262
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 80, 114
NspI RCATGY 1 cut(s) 36
PaeI GCATGC 1 cut(s) 36
PctI GAATGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 336
PkrI GCNGC 2 cut(s) 186, 220
Psp6I CCWGG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 80, 114
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 2 cut(s) 195, 262
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 185, 219
Sau3AI GATC 2 cut(s) 195, 262
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 52, 120
SetI ASST 7 cut(s) 73, 84, 97, 132, 180, 243, 308
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 269
SphI GCATGC 1 cut(s) 36
Sse9I AATT 1 cut(s) 169
SsiI CCGC 3 cut(s) 116, 184, 301
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 50, 118
TaiI ACGT 2 cut(s) 97, 243
TaqI TCGA 2 cut(s) 143, 317
TaqII GACCGA 1 cut(s) 286
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.