MD15G1003200.v1.1

ATP-dependent zinc metalloprotease FTSH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011868
Physical Location & Seq
Reverse (-)
193814 .. 196640
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1003200.v1.1.491

Sequence Viewer

Length: 2100 bp
ATGGCTTCCGCCACCAACCCCTTGCTCTCTTCCAACTTCTTCGGAACCACCACAATCCTCCACTATCCTCCCACCCCTAAAACCACCTCTAAATCCAAATCATCCCTCCCAATTCCCCTGCCCTTCTTCTCCCAGCGAAAGCTTTTCGCCACCAAAAACATCTTCAACTCTGAACCCGATTCACAGCCATTCAAATCCGCAACTTCCCAAGCCACTTTAGCCGCCTTGCTCTTCTCTTCTCTCACCCCACAACCCGGCCTAGCCATAGACAACACGCCCACTCCCACTCCGCCACCTGTGCTCCAAGCCCAGCCTTCCAAACCCAACGCCGCCTCTCCTTTCTCCCAAAACCTCCTCCTCAACGCCCCTAAGCCCCAATCCCAGGTCGCCACTGACCTCCCCGAAGGCAGCCAATGGCGCTACAGCGAGTTCCTCAACGCCGTCAAGAAGGGCAAGGTCGAGAGAGTCAGGTTCGTCAAAGACGGTTCTGCCCTTCAGCTCACTGCCGTCGATGGGCGCCGCGCCTCCGTCGTTGTCCCCAACGACCCTGACCTCATCGACATTTTGGCCATGAACGGCGTCGATATTTCCGTCTCCGAAGGCGATTCGGGAGGTGGCCTATTCAATTTCATCGGCAATTTGTTGTTCCCAATCTTGGCCTTTGCCGGATTGTTCCTTCTTTTTCGGCGAGCTGGAGGAGGCCCAGGAGGGCCGGGCGGGCTGGGCGGCCCCATGGATTTCGGAAGGTCCAAGTCCAAATTCCAAGAAGTTCCAGAGACGGGGGTGACTTTCTCCGATGTAGCTGGAGCTGACCAAGCAAAATTGGAGCTGCAGGAGGTGGTGGATTTCTTGAAGAACCCAGACAAGTACACCGCCCTCGGTGCCAAAATCCCAAAAGGATGTCTTTTGGTGGGTCCACCTGGTACCGGCAAGACCCTTCTGGCTCGCGCCGTGGCCGGAGAGGCTGGGACGCCGTTTTTCTCGTGCGCGGCTTCCGAGTTCGTGGAGTTGTTTGTGGGAGTGGGGGCGTCGAGAGTGCATGCGGTGGGGAGGCAGAGAGGCGCGGGGATGGGCGGCGGGAATGATGAGAGGGAGCAGACTATTAATCAGCTGCTGACGGAGATGGATGGGTTTTCTGGTAATTCCGGTGTGATAGTTTTGGCGGCAACCAACAGGCCGGATGTTCTTGACTCGGCGTTGTTGAGGCCCGGAAGGTTTGACCGACAGGTGACCGTCGACAGGCCTGATGTTGCTGGCAGAGTTAAAATACTGCAGGTGCACTCTAGAGGGAAGGCGCTTGCTAAGGATGTGGACTTTGACAAAATTGCGAGGAGAACACCTGGTTTCACGGGCGCCGATCTGCAGAACCTGATGAACGAGGCTGCCATTCTCGCAGCCAGACGTGACCTCAAAGAAATAAGTAAAGATGAGATCGCCGATGCTCTGGAGCGGATCATTGCTGGACCAGAGAAGAAAAATGCTGTTGTCTCTGAAGAGAAGAAGAAATTAGTCGCCTACCATGAGGCGGGGCATGCTCTTGTTGGTGCATTGATGCCGGAATATGATCCTGTTGCTAAGATATCCATCATCCCTCGTGGCCAAGCTGGCGGTCTCACCTTCTTCGCTCCAAGTGAAGAGAGACTTGAGTCTGGACTGTACAGTAGAAGCTACCTGGAGAATCAAATGGCTGTTGCCCTCGGTGGAAGGGTTGCGGAAGAAGTTATCTTTGGTCAGGAGAATGTGACAACAGGGGCATCAAGCGACTTCATGCAAGTTTCAAGGGTGGCAAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAAAAGATTGGACAAATTGCGGTGGGTGCCTCTGGTGGCAATCCCTTCTTAGGGCAACAGATGTCGTCCCAAAAGGACTACTCCATGGCAACCGCTGATATTGTGGATGGAGAGGTTAGGGAATTGGTAGAGACAGCTTATTCGAGGGCCACACAGATCATCACAACTCACATTGATATCCTCCACAAGCTTGCCCAGCTCCTCATAGAGAAGGAAACTGTTGATGGTGAAGAATTCATGAGCCTCTTCATTGATGGAAAGGCCGAGCTATACGTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Peptidase_M41

Protein Analysis

700

Amino Acids

74.55

Weight (kDa)

6.12

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 301 - 349 3.8e-12 ATPase family associated with various cellular activities (AAA)
AAA PF00004 346 - 413 7.6e-14 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 436 - 478 2e-16 AAA+ lid domain
Peptidase_M41 PF01434 495 - 687 6.1e-72 Peptidase family M41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50250 AT5G42270
fragaria_vesca FvH4_2g37610 FvH4_2g37610 FvH4_2g37610 FvH4_2g37610
malus_domestica MD08G1003700.v1.1 MD15G1003200.v1.1
prunus_persica Prupe.1G355600_v2.0.a1 Prupe.1G355600_v2.0.a1
pyrus_communis pycom15g00230
rosa_chinensis RchiOBHm_Chr6g0304121
rosa_laevigata RLG00000011013
rosa_multiflora Rmu_ssc0000218.1_g000001 Rmu_ssc0000218.1_g000004
rosa_roxburghii Rroxscaffold_7G00164050
rosa_rugosa Rorug06G0327800
rosa_samantha Rh6BG461000
rosa_wichuraiana Rw6G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1264
Acc36I ACCTGC 1 cut(s) 1264
Acc65I GGTACC 1 cut(s) 923
AccB1I GGYRCC 5 cut(s) 516, 881, 923, 1352, 1844
AccBSI CCGCTC 1 cut(s) 1450
AccI GTMKAC 1 cut(s) 1236
AccII CGCG 4 cut(s) 522, 948, 989, 1064
AclWI GGATC 2 cut(s) 1460, 1559
AcoI YGGCCR 3 cut(s) 567, 954, 1597
AcsI RAATTY 2 cut(s) 758, 2051
AcuI CTGAAG 2 cut(s) 479, 1512
AcyI GRCGYC 5 cut(s) 517, 579, 971, 1028, 1353
AfaI GTAC 3 cut(s) 869, 925, 1658
AgsI TTSAA 5 cut(s) 166, 193, 625, 853, 1779
AjiI CACGTC 1 cut(s) 1403
AjnI CCWGG 5 cut(s) 381, 703, 919, 1339, 1671
AjuI GAANNNNNNNTTGG 6 cut(s) 146, 178, 743, 775, 1710, 1742
Alw21I GWGCWC 2 cut(s) 303, 1281
Alw26I GTCTC 6 cut(s) 598, 770, 1492, 1616, 1633, 1943
Alw44I GTGCAC 1 cut(s) 1277
AlwI GGATC 2 cut(s) 1460, 1559
AlwNI CAGNNNCTG 2 cut(s) 1114, 1369
ApaLI GTGCAC 1 cut(s) 1277
ApeKI GCWGC 5 cut(s) 408, 829, 1111, 1382, 1394
ApoI RAATTY 2 cut(s) 758, 2051
ArsI GACNNNNNNTTYG 2 cut(s) 1942, 1974
AseI ATTAAT 1 cut(s) 1104
Asp718I GGTACC 1 cut(s) 923
AspLEI GCGC 8 cut(s) 420, 519, 524, 950, 989, 1064, 1297, 1355
AspS9I GGNCC 8 cut(s) 701, 710, 728, 747, 914, 1206, 1463, 1965
AsuC2I CCSGG 3 cut(s) 255, 714, 1209
AsuHPI GGTGA 5 cut(s) 235, 796, 1240, 1606, 2057
AvaII GGWCC 3 cut(s) 747, 914, 1463
BaeGI GKGCMC 1 cut(s) 1281
BalI TGGCCA 2 cut(s) 569, 1599
BanI GGYRCC 5 cut(s) 516, 881, 923, 1352, 1844
BauI CACGAG 2 cut(s) 982, 1593
Bbv12I GWGCWC 2 cut(s) 303, 1281
BbvI GCAGC 5 cut(s) 420, 816, 1098, 1369, 1406
BccI CCATC 9 cut(s) 506, 1063, 1117, 1121, 1592, 1789, 1919, 2036, 2066
BceAI ACGGC 5 cut(s) 425, 491, 592, 935, 958
BciT130I CCWGG 5 cut(s) 383, 705, 921, 1341, 1673
BcnI CCSGG 3 cut(s) 255, 714, 1209
BcoDI GTCTC 6 cut(s) 598, 770, 1492, 1616, 1633, 1943
BfaI CTAG 2 cut(s) 260, 1284
BfmI CTRYAG 4 cut(s) 421, 830, 1271, 1361
BfoI RGCGCY 4 cut(s) 421, 520, 1298, 1356
BfuAI ACCTGC 1 cut(s) 1264
BglI GCCNNNNNGGC 3 cut(s) 718, 962, 1605
Bme1390I CCNGG 8 cut(s) 255, 383, 705, 714, 921, 1209, 1341, 1673
Bme18I GGWCC 3 cut(s) 747, 914, 1463
BmgBI CACGTC 1 cut(s) 1403
BmgT120I GGNCC 8 cut(s) 701, 710, 728, 747, 914, 1206, 1463, 1965
BmiI GGNNCC 8 cut(s) 46, 518, 730, 883, 915, 925, 1354, 1846
BmrFI CCNGG 8 cut(s) 255, 383, 705, 714, 921, 1209, 1341, 1673
BmsI GCATC 3 cut(s) 1429, 1542, 1763
BoxI GACNNNNGTC 1 cut(s) 1645
BpmI CTGGAG 4 cut(s) 714, 825, 1466, 1694
Bpu10I CCTNAGC 2 cut(s) 369, 1302
BpuEI CTTGAG 1 cut(s) 1664
BpuMI CCSGG 3 cut(s) 255, 714, 1209
BsaBI GATNNNNATC 1 cut(s) 1583
BsaHI GRCGYC 5 cut(s) 517, 579, 971, 1028, 1353
BsaI GGTCTC 1 cut(s) 1616
BsaJI CCNNGG 7 cut(s) 381, 703, 732, 877, 951, 1696, 1902
BsaWI WCCGGW 1 cut(s) 1145
BsaXI ACNNNNNCTCC 6 cut(s) 265, 271, 285, 295, 301, 315
Bse118I RCCGGY 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 1455
Bse8I GATNNNNATC 1 cut(s) 1583
BseBI CCWGG 5 cut(s) 383, 705, 921, 1341, 1673
BseDI CCNNGG 7 cut(s) 381, 703, 732, 877, 951, 1696, 1902
BseGI GGATG 8 cut(s) 101, 905, 1074, 1132, 1186, 1312, 1587, 1930
BseJI GATNNNNATC 1 cut(s) 1583
BseMI GCAATG 1 cut(s) 1455
BseRI GAGGAG 5 cut(s) 344, 347, 711, 1345, 2009
BseSI GKGCMC 1 cut(s) 1281
BseXI GCAGC 5 cut(s) 420, 816, 1098, 1369, 1406
BseYI CCCAGC 5 cut(s) 132, 309, 721, 965, 2013
Bsh1236I CGCG 4 cut(s) 522, 948, 989, 1064
BshNI GGYRCC 5 cut(s) 516, 881, 923, 1352, 1844
BsiHKAI GWGCWC 2 cut(s) 303, 1281
BsiSI CCGG 9 cut(s) 255, 666, 713, 927, 957, 1146, 1178, 1209, 1556
BslFI GGGAC 3 cut(s) 521, 982, 1870
BsmAI GTCTC 6 cut(s) 598, 770, 1492, 1616, 1633, 1943
BsmBI CGTCTC 2 cut(s) 598, 770
BsmFI GGGAC 3 cut(s) 521, 982, 1870
Bso31I GGTCTC 1 cut(s) 1616
Bsp1286I GDGCHC 2 cut(s) 303, 1281
Bsp1407I TGTACA 1 cut(s) 1656
Bsp143I GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
Bsp19I CCATGG 2 cut(s) 732, 1902
BspFNI CGCG 4 cut(s) 522, 948, 989, 1064
BspHI TCATGA 1 cut(s) 2055
BspLI GGNNCC 8 cut(s) 46, 518, 730, 883, 915, 925, 1354, 1846
BspMAI CTGCAG 3 cut(s) 834, 1275, 1365
BspMI ACCTGC 1 cut(s) 1264
BspPI GGATC 2 cut(s) 1460, 1559
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 5 cut(s) 516, 881, 923, 1352, 1844
BspTNI GGTCTC 1 cut(s) 1616
BsrBI CCGCTC 1 cut(s) 1450
BsrDI GCAATG 1 cut(s) 1455
BsrFI RCCGGY 1 cut(s) 926
BsrGI TGTACA 1 cut(s) 1656
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 7 cut(s) 381, 703, 732, 877, 951, 1696, 1902
BssMI GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
BssNI GRCGYC 5 cut(s) 517, 579, 971, 1028, 1353
BssSI CACGAG 2 cut(s) 982, 1593
BssT1I CCWWGG 2 cut(s) 732, 1902
Bst2BI CACGAG 2 cut(s) 982, 1593
Bst2UI CCWGG 5 cut(s) 383, 705, 921, 1341, 1673
Bst4CI ACNGT 5 cut(s) 485, 1234, 1656, 1661, 2038
Bst6I CTCTTC 6 cut(s) 34, 236, 241, 1488, 1629, 2069
BstACI GRCGYC 5 cut(s) 517, 579, 971, 1028, 1353
BstAUI TGTACA 1 cut(s) 1656
BstC8I GCNNGC 9 cut(s) 690, 719, 946, 1041, 1255, 1299, 1533, 1606, 2010
BstDEI CTNAG 4 cut(s) 369, 1302, 1575, 1867
BstDSI CCRYGG 3 cut(s) 732, 951, 1902
BstEII GGTNACC 1 cut(s) 1228
BstF5I GGATG 8 cut(s) 101, 905, 1074, 1132, 1186, 1312, 1587, 1930
BstFNI CGCG 4 cut(s) 522, 948, 989, 1064
BstH2I RGCGCY 4 cut(s) 421, 520, 1298, 1356
BstHHI GCGC 8 cut(s) 420, 519, 524, 950, 989, 1064, 1297, 1355
BstKTI GATC 5 cut(s) 1360, 1434, 1455, 1567, 1977
BstMAI GTCTC 6 cut(s) 598, 770, 1492, 1616, 1633, 1943
BstMBI GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
BstNI CCWGG 5 cut(s) 383, 705, 921, 1341, 1673
BstNSI RCATGY 2 cut(s) 1043, 1535
BstPAI GACNNNNGTC 1 cut(s) 1645
BstPI GGTNACC 1 cut(s) 1228
BstSCI CCNGG 8 cut(s) 253, 381, 703, 712, 919, 1207, 1339, 1671
BstSFI CTRYAG 4 cut(s) 421, 830, 1271, 1361
BstSLI GKGCMC 1 cut(s) 1281
BstUI CGCG 4 cut(s) 522, 948, 989, 1064
BstV1I GCAGC 5 cut(s) 420, 816, 1098, 1369, 1406
BtgI CCRYGG 3 cut(s) 732, 951, 1902
BtrI CACGTC 1 cut(s) 1403
BtsCI GGATG 8 cut(s) 101, 905, 1074, 1132, 1186, 1312, 1587, 1930
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 390, 501
BveI ACCTGC 1 cut(s) 1264
Cac8I GCNNGC 9 cut(s) 690, 719, 946, 1041, 1255, 1299, 1533, 1606, 2010
CaiI CAGNNNCTG 2 cut(s) 1114, 1369
CciI TCATGA 1 cut(s) 2055
CfoI GCGC 8 cut(s) 420, 519, 524, 950, 989, 1064, 1297, 1355
Cfr10I RCCGGY 1 cut(s) 926
Cfr13I GGNCC 8 cut(s) 701, 710, 728, 747, 914, 1206, 1463, 1965
CseI GACGC 3 cut(s) 568, 979, 1017
CsiI ACCWGGT 2 cut(s) 919, 1339
Csp6I GTAC 3 cut(s) 868, 924, 1657
CviAII CATG 8 cut(s) 571, 733, 1040, 1520, 1532, 1768, 1903, 2056
CviQI GTAC 3 cut(s) 868, 924, 1657
DdeI CTNAG 4 cut(s) 369, 1302, 1575, 1867
DinI GGCGCC 2 cut(s) 518, 1354
DpnI GATC 5 cut(s) 1359, 1433, 1454, 1566, 1976
DpnII GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
EaeI YGGCCR 3 cut(s) 567, 954, 1597
Eam1104I CTCTTC 6 cut(s) 34, 236, 241, 1488, 1629, 2069
EarI CTCTTC 6 cut(s) 34, 236, 241, 1488, 1629, 2069
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 732, 1902
Eco147I AGGCCT 1 cut(s) 1243
Eco31I GGTCTC 1 cut(s) 1616
Eco32I GATATC 2 cut(s) 1581, 1996
Eco47I GGWCC 3 cut(s) 747, 914, 1463
Eco57I CTGAAG 2 cut(s) 479, 1512
Eco91I GGTNACC 1 cut(s) 1228
EcoO65I GGTNACC 1 cut(s) 1228
EcoRI GAATTC 1 cut(s) 2051
EcoRII CCWGG 5 cut(s) 381, 703, 919, 1339, 1671
EcoRV GATATC 2 cut(s) 1581, 1996
EcoT14I CCWWGG 2 cut(s) 732, 1902
EgeI GGCGCC 2 cut(s) 518, 1354
EheI GGCGCC 2 cut(s) 518, 1354
ErhI CCWWGG 2 cut(s) 732, 1902
Esp3I CGTCTC 2 cut(s) 598, 770
FaeI CATG 8 cut(s) 574, 736, 1043, 1523, 1535, 1771, 1906, 2059
FalI AAGNNNNNCTT 4 cut(s) 888, 920, 1626, 1658
FaqI GGGAC 3 cut(s) 521, 982, 1870
FatI CATG 8 cut(s) 570, 732, 1039, 1519, 1531, 1767, 1902, 2055
FauI CCCGC 4 cut(s) 710, 1057, 1070, 1519
FblI GTMKAC 1 cut(s) 1236
FokI GGATG 8 cut(s) 88, 912, 1081, 1139, 1193, 1319, 1574, 1937
FspBI CTAG 2 cut(s) 260, 1284
GlaI GCGC 8 cut(s) 419, 518, 523, 949, 988, 1063, 1296, 1354
GsaI CCCAGC 5 cut(s) 136, 313, 725, 969, 2017
GsuI CTGGAG 4 cut(s) 714, 825, 1466, 1694
HaeII RGCGCY 4 cut(s) 421, 520, 1298, 1356
HapII CCGG 9 cut(s) 255, 666, 713, 927, 957, 1146, 1178, 1209, 1556
HgaI GACGC 3 cut(s) 568, 979, 1017
HhaI GCGC 8 cut(s) 420, 519, 524, 950, 989, 1064, 1297, 1355
Hin1I GRCGYC 5 cut(s) 517, 579, 971, 1028, 1353
Hin1II CATG 8 cut(s) 574, 736, 1043, 1523, 1535, 1771, 1906, 2059
Hin6I GCGC 8 cut(s) 418, 517, 522, 948, 987, 1062, 1295, 1353
HinP1I GCGC 8 cut(s) 418, 517, 522, 948, 987, 1062, 1295, 1353
HincII GTYRAC 1 cut(s) 1237
HindII GTYRAC 1 cut(s) 1237
HindIII AAGCTT 2 cut(s) 140, 2006
HinfI GANTC 6 cut(s) 179, 465, 605, 1190, 1646, 1678
HpaII CCGG 9 cut(s) 255, 666, 713, 927, 957, 1146, 1178, 1209, 1556
HphI GGTGA 5 cut(s) 235, 796, 1240, 1606, 2057
Hpy166II GTNNAC 5 cut(s) 870, 917, 1237, 1279, 1312
Hpy188I TCNGA 7 cut(s) 44, 172, 598, 743, 796, 997, 1492
Hpy8I GTNNAC 5 cut(s) 870, 917, 1237, 1279, 1312
Hpy99I CGWCG 5 cut(s) 512, 533, 584, 1033, 1238
HpyCH4III ACNGT 5 cut(s) 485, 1234, 1656, 1661, 2038
HpyCH4IV ACGT 2 cut(s) 1402, 2091
HpyCH4V TGCA 7 cut(s) 832, 1039, 1273, 1279, 1363, 1547, 1771
HpyF3I CTNAG 4 cut(s) 369, 1302, 1575, 1867
HpySE526I ACGT 2 cut(s) 1402, 2091
Hsp92I GRCGYC 5 cut(s) 517, 579, 971, 1028, 1353
Hsp92II CATG 8 cut(s) 574, 736, 1043, 1523, 1535, 1771, 1906, 2059
HspAI GCGC 8 cut(s) 418, 517, 522, 948, 987, 1062, 1295, 1353
KasI GGCGCC 2 cut(s) 516, 1352
KpnI GGTACC 1 cut(s) 927
Kzo9I GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 7 cut(s) 306, 806, 826, 1093, 1447, 1630, 2022
Lsp1109I GCAGC 5 cut(s) 420, 816, 1098, 1369, 1406
LweI GCATC 3 cut(s) 1429, 1542, 1763
MabI ACCWGGT 2 cut(s) 919, 1339
MaeI CTAG 2 cut(s) 260, 1284
MaeII ACGT 2 cut(s) 1402, 2091
MaeIII GTNAC 4 cut(s) 784, 1228, 1403, 1741
MalI GATC 5 cut(s) 1359, 1433, 1454, 1566, 1976
MbiI CCGCTC 1 cut(s) 1450
MboI GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
MhlI GDGCHC 2 cut(s) 303, 1281
MlsI TGGCCA 2 cut(s) 569, 1599
MluNI TGGCCA 2 cut(s) 569, 1599
Mly113I GGCGCC 2 cut(s) 517, 1353
MlyI GAGTC 3 cut(s) 474, 1184, 1655
MmeI TCCRAC 2 cut(s) 57, 2074
Mox20I TGGCCA 2 cut(s) 569, 1599
MscI TGGCCA 2 cut(s) 569, 1599
MseI TTAA 2 cut(s) 1104, 1263
Msp20I TGGCCA 2 cut(s) 569, 1599
MspA1I CMGCKG 2 cut(s) 1111, 1913
MspI CCGG 9 cut(s) 255, 666, 713, 927, 957, 1146, 1178, 1209, 1556
MspR9I CCNGG 8 cut(s) 255, 383, 705, 714, 921, 1209, 1341, 1673
MteI GCGCNGCGC 1 cut(s) 520
MvaI CCWGG 5 cut(s) 383, 705, 921, 1341, 1673
MvnI CGCG 4 cut(s) 522, 948, 989, 1064
NarI GGCGCC 2 cut(s) 517, 1353
NciI CCSGG 3 cut(s) 255, 714, 1209
NcoI CCATGG 2 cut(s) 732, 1902
NdeII GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
NlaIII CATG 8 cut(s) 574, 736, 1043, 1523, 1535, 1771, 1906, 2059
NlaIV GGNNCC 8 cut(s) 46, 518, 730, 883, 915, 925, 1354, 1846
NmeAIII GCCGAG 1 cut(s) 1172
NmuCI GTSAC 4 cut(s) 784, 1228, 1403, 1741
NspI RCATGY 2 cut(s) 1043, 1535
PaeI GCATGC 2 cut(s) 1043, 1535
PagI TCATGA 1 cut(s) 2055
PaqCI CACCTGC 1 cut(s) 1264
PceI AGGCCT 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PfeI GAWTC 3 cut(s) 179, 605, 1678
PleI GAGTC 3 cut(s) 473, 1184, 1654
PluTI GGCGCC 2 cut(s) 520, 1356
PpsI GAGTC 3 cut(s) 473, 1184, 1654
PshAI GACNNNNGTC 1 cut(s) 1645
PshBI ATTAAT 1 cut(s) 1104
Psp6I CCWGG 5 cut(s) 381, 703, 919, 1339, 1671
PspEI GGTNACC 1 cut(s) 1228
PspFI CCCAGC 5 cut(s) 132, 309, 721, 965, 2013
PspGI CCWGG 5 cut(s) 381, 703, 919, 1339, 1671
PspN4I GGNNCC 8 cut(s) 46, 518, 730, 883, 915, 925, 1354, 1846
PspPI GGNCC 8 cut(s) 701, 710, 728, 747, 914, 1206, 1463, 1965
PstI CTGCAG 3 cut(s) 834, 1275, 1365
PstNI CAGNNNCTG 2 cut(s) 1114, 1369
PvuII CAGCTG 1 cut(s) 1111
RsaI GTAC 3 cut(s) 869, 925, 1658
RsaNI GTAC 3 cut(s) 868, 924, 1657
SalI GTCGAC 1 cut(s) 1235
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 1104, 1263
Sau3AI GATC 5 cut(s) 1357, 1431, 1452, 1564, 1974
Sau96I GGNCC 8 cut(s) 701, 710, 728, 747, 914, 1206, 1463, 1965
SchI GAGTC 3 cut(s) 474, 1184, 1655
ScrFI CCNGG 8 cut(s) 255, 383, 705, 714, 921, 1209, 1341, 1673
SduI GDGCHC 2 cut(s) 303, 1281
SexAI ACCWGGT 2 cut(s) 919, 1339
SfaNI GCATC 3 cut(s) 1429, 1542, 1763
SfcI CTRYAG 4 cut(s) 421, 830, 1271, 1361
SfoI GGCGCC 2 cut(s) 518, 1354
SinI GGWCC 3 cut(s) 747, 914, 1463
SmlI CTYRAG 1 cut(s) 1643
SmoI CTYRAG 1 cut(s) 1643
SphI GCATGC 2 cut(s) 1043, 1535
SseBI AGGCCT 1 cut(s) 1243
SspDI GGCGCC 2 cut(s) 516, 1352
SspMI CTAG 2 cut(s) 260, 1284
StuI AGGCCT 1 cut(s) 1243
StyD4I CCNGG 8 cut(s) 253, 381, 703, 712, 919, 1207, 1339, 1671
StyI CCWWGG 2 cut(s) 732, 1902
TaaI ACNGT 5 cut(s) 485, 1234, 1656, 1661, 2038
TaiI ACGT 2 cut(s) 1405, 2094
TaqI TCGA 7 cut(s) 459, 510, 558, 582, 1031, 1236, 1961
TaqII GACCGA 1 cut(s) 1236
TatI WGTACW 2 cut(s) 867, 1656
TauI GCSGC 7 cut(s) 224, 332, 522, 729, 992, 1077, 1166
TfiI GAWTC 3 cut(s) 179, 605, 1678
Tru1I TTAA 2 cut(s) 1104, 1263
Tru9I TTAA 2 cut(s) 1104, 1263
TscAI CASTG 2 cut(s) 397, 508
TseFI GTSAC 4 cut(s) 784, 1228, 1403, 1741
TseI GCWGC 5 cut(s) 408, 829, 1111, 1382, 1394
Tsp45I GTSAC 4 cut(s) 784, 1228, 1403, 1741
TspDTI ATGAA 6 cut(s) 587, 619, 1388, 1756, 2044, 2056
TspGWI ACGGA 3 cut(s) 517, 580, 1133
TspRI CASTG 2 cut(s) 397, 508
VneI GTGCAC 1 cut(s) 1277
VpaK11BI GGWCC 3 cut(s) 747, 914, 1463
VspI ATTAAT 1 cut(s) 1104
XapI RAATTY 2 cut(s) 758, 2051
XbaI TCTAGA 1 cut(s) 1283
XceI RCATGY 2 cut(s) 1043, 1535
XmiI GTMKAC 1 cut(s) 1236
XspI CTAG 2 cut(s) 260, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.