Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0011868

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1297

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

gtgcactccagagggaaggcactggcaaaggatgtggactttgaaaagattgcaaggagaacgcctggtttcacaggagcagatctacagaacctgatgaacgaagctgccattcttgcagccagacgtgagctcaaggaaataagcaaagatgagatagctgatgctctggagcgaatcattgccggaccagagaagaaaaatgctgtagtctcggaggagaagaagaaattagttgcttaccatgaggctgggcatgctcttgttggtgccttgatgccggaatatgatcctgtagccaagatatccatcatcccccgtggccaagcaggtggtctaaccttctttgctccaagtgaagagagactcgagtctggactgtacagcagaagctacctggagaatcaaatggctgttgcccttggaggaagggtggctgaagaagtcatctttggtcaggcgaatgtgacaacaggagcatcaaatgacttcatgcaagtttcaagggtggcaaggcagatggtcgagagatttggattcagcaaaaagatcggacaagttgcggttggtagttcaggtggcaatcccttcttaggtcaacagatgtcatcccaaaaagattactccatggcaaccgctgatatcgtggatgcagaggtgagggagctggtagagaaagcttacaaaagggccacggagatcatcacaacccacattgacatcctccacaagttggccaacctcctgatagagaaggaaagtgttgatggtgaagaattcatgagcctctttattgatggaaaggctgagctttatgtctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

274

Amino Acids

29.92

Weight (kDa)

5.55

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50250 AT5G42270
fragaria_vesca	FvH4_2g37610 FvH4_2g37610 FvH4_2g37610 FvH4_2g37610
malus_domestica	MD08G1003700.v1.1 MD15G1003200.v1.1
prunus_persica	Prupe.1G355600_v2.0.a1 Prupe.1G355600_v2.0.a1
pyrus_communis	pycom15g00230
rosa_chinensis	RchiOBHm_Chr6g0304121
rosa_laevigata	RLG00000011013
rosa_multiflora	Rmu_ssc0000218.1_g000001 Rmu_ssc0000218.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164050
rosa_rugosa	Rorug06G0327800
rosa_samantha	Rh6BG461000
rosa_wichuraiana	Rw6G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	733
AciI	CCGC	2 cut(s)	563, 636
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	2 cut(s)	322, 735
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	593, 733
AgsI	TTSAA	2 cut(s)	44, 504
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	64, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	7 cut(s)	107, 133, 161, 393, 667, 680, 811
AluI	AGCT	7 cut(s)	107, 133, 161, 393, 667, 680, 811
Alw21I	GWGCWC	2 cut(s)	6, 135
Alw26I	GTCTC	2 cut(s)	217, 358
Alw44I	GTGCAC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	322, 690, 735
ApaLI	GTGCAC	1 cut(s)	2
ApeKI	GCWGC	2 cut(s)	107, 119
ApoI	RAATTY	1 cut(s)	776
AspS9I	GGNCC	2 cut(s)	188, 690
AsuHPI	GGTGA	2 cut(s)	670, 782
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	6
BalI	TGGCCA	2 cut(s)	324, 737
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	6, 135
BbvI	GCAGC	2 cut(s)	94, 131
BccI	CCATC	4 cut(s)	317, 514, 761, 791
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BciT130I	CCWGG	2 cut(s)	66, 398
BcoDI	GTCTC	2 cut(s)	217, 358
BfmI	CTRYAG	3 cut(s)	86, 207, 294
BfuAI	ACCTGC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	2 cut(s)	108, 120
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	2 cut(s)	109, 121
Bme1390I	CCNGG	2 cut(s)	66, 398
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	188, 690
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	66, 398
BmsI	GCATC	4 cut(s)	154, 267, 488, 640
BoxI	GACNNNNGTC	1 cut(s)	370
BpmI	CTGGAG	2 cut(s)	191, 419
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	319, 421, 627, 693
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 733
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	2 cut(s)	66, 398
BseDI	CCNNGG	4 cut(s)	319, 421, 627, 693
BseGI	GGATG	5 cut(s)	37, 312, 608, 655, 720
BseJI	GATNNNNATC	1 cut(s)	308
BseLI	CCNNNNNNNGG	2 cut(s)	593, 733
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	94, 131
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	3 cut(s)	324, 692, 737
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	6, 135
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	186, 281
BslI	CCNNNNNNNGG	2 cut(s)	593, 733
BsmAI	GTCTC	2 cut(s)	217, 358
BsnI	GGCC	3 cut(s)	324, 692, 737
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	6, 135
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	82, 289, 549, 699
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	2 cut(s)	563, 636
BspANI	GGCC	3 cut(s)	324, 692, 737
BspCNI	CTCAG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	4 cut(s)	319, 421, 627, 693
BssMI	GATC	4 cut(s)	82, 289, 549, 699
BssT1I	CCWWGG	2 cut(s)	421, 627
Bst2UI	CCWGG	2 cut(s)	66, 398
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	592, 807
BstDSI	CCRYGG	3 cut(s)	319, 627, 693
BstF5I	GGATG	5 cut(s)	37, 312, 608, 655, 720
BstKTI	GATC	4 cut(s)	85, 292, 552, 702
BstMAI	GTCTC	2 cut(s)	217, 358
BstMBI	GATC	4 cut(s)	82, 289, 549, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 257
BstNI	CCWGG	2 cut(s)	66, 398
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	64, 396
BstSFI	CTRYAG	3 cut(s)	86, 207, 294
BstSLI	GKGCMC	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	94, 131
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	2 cut(s)	251, 332
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	324, 692, 737
BtgI	CCRYGG	3 cut(s)	319, 627, 693
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	5 cut(s)	37, 312, 608, 655, 720
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	94
CciI	TCATGA	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	188, 690
Csp6I	GTAC	1 cut(s)	382
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	5 cut(s)	245, 257, 493, 628, 781
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	592, 807
DpnI	GATC	4 cut(s)	84, 291, 551, 701
DpnII	GATC	4 cut(s)	82, 289, 549, 699
EaeI	YGGCCR	2 cut(s)	322, 735
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	421, 627
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	2 cut(s)	306, 643
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	64, 396
EcoRV	GATATC	2 cut(s)	306, 643
EcoT14I	CCWWGG	2 cut(s)	421, 627
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	421, 627
FaeI	CATG	5 cut(s)	248, 260, 496, 631, 784
FaiI	YATR	8 cut(s)	246, 258, 288, 494, 629, 782, 816, 823
FatI	CATG	5 cut(s)	244, 256, 492, 627, 780
Fnu4HI	GCNGC	2 cut(s)	108, 120
FokI	GGATG	5 cut(s)	44, 299, 595, 662, 707
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	108, 120
GluI	GCNGC	2 cut(s)	108, 120
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	191, 419
HaeIII	GGCC	3 cut(s)	324, 692, 737
HapII	CCGG	2 cut(s)	186, 281
Hin1II	CATG	5 cut(s)	248, 260, 496, 631, 784
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	5 cut(s)	177, 366, 371, 403, 537
HpaII	CCGG	2 cut(s)	186, 281
HphI	GGTGA	2 cut(s)	670, 782
Hpy166II	GTNNAC	3 cut(s)	4, 37, 599
Hpy188I	TCNGA	2 cut(s)	217, 554
Hpy188III	TCNNGA	6 cut(s)	9, 170, 375, 526, 745, 781
Hpy8I	GTNNAC	3 cut(s)	4, 37, 599
HpyAV	CCTTC	5 cut(s)	10, 352, 423, 598, 748
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	5 cut(s)	4, 53, 119, 496, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 257
HpyF3I	CTNAG	2 cut(s)	592, 807
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	5 cut(s)	248, 260, 496, 631, 784
Kzo9I	GATC	4 cut(s)	82, 289, 549, 699
LmnI	GCTCC	5 cut(s)	77, 172, 355, 476, 664
Lsp1109I	GCAGC	2 cut(s)	94, 131
LweI	GCATC	4 cut(s)	154, 267, 488, 640
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	4 cut(s)	84, 291, 551, 701
MboI	GATC	4 cut(s)	82, 289, 549, 699
MboII	GAAGA	6 cut(s)	208, 235, 238, 371, 452, 785
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	6, 135
MlsI	TGGCCA	2 cut(s)	324, 737
MluCI	AATT	2 cut(s)	230, 776
MluNI	TGGCCA	2 cut(s)	324, 737
MlyI	GAGTC	2 cut(s)	360, 380
MnlI	CCTC	9 cut(s)	5, 211, 241, 419, 649, 654, 734, 752, 797
Mox20I	TGGCCA	2 cut(s)	324, 737
MscI	TGGCCA	2 cut(s)	324, 737
Msp20I	TGGCCA	2 cut(s)	324, 737
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	2 cut(s)	186, 281
MspR9I	CCNGG	2 cut(s)	66, 398
MvaI	CCWGG	2 cut(s)	66, 398
MwoI	GCNNNNNNNGC	2 cut(s)	116, 257
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	4 cut(s)	82, 289, 549, 699
NlaIII	CATG	5 cut(s)	248, 260, 496, 631, 784
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	1 cut(s)	780
PaqCI	CACCTGC	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	177, 403, 537
PflMI	CCANNNNNTGG	1 cut(s)	733
PkrI	GCNGC	2 cut(s)	109, 121
PleI	GAGTC	2 cut(s)	360, 379
PpsI	GAGTC	2 cut(s)	360, 379
PshAI	GACNNNNGTC	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	64, 396
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	2 cut(s)	64, 396
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	188, 690
PspXI	VCTCGAGB	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	135
SatI	GCNGC	2 cut(s)	108, 120
Sau3AI	GATC	4 cut(s)	82, 289, 549, 699
Sau96I	GGNCC	2 cut(s)	188, 690
SchI	GAGTC	2 cut(s)	360, 380
ScrFI	CCNGG	2 cut(s)	66, 398
SduI	GDGCHC	2 cut(s)	6, 135
SfaNI	GCATC	4 cut(s)	154, 267, 488, 640
SfcI	CTRYAG	3 cut(s)	86, 207, 294
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	134, 368
SmoI	CTYRAG	2 cut(s)	134, 368
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	2 cut(s)	230, 776
SsiI	CCGC	2 cut(s)	563, 636
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	64, 396
StyI	CCWWGG	2 cut(s)	421, 627
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	369, 525
TasI	AATT	2 cut(s)	230, 776
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	3 cut(s)	177, 403, 537
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	107, 119
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	113, 481, 769
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	733
VneI	GTGCAC	1 cut(s)	2
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.