Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011868

Physical Location & Seq

Genomic Coordinates Reverse (-)

6127342 .. 6130566

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGCTTCCACAACCAACCCTCTACTCTCTTCTAGCTTCTACGGCACTAAAATCCTCCACTCTCCTCCAACCCCCAAAACCACCAGATCATCAGCACCACTTCTTCCTCTTCCGTTCTTCTCCAAACGAAAGCTTGTAATTGCCAAAAATGAAGAACCCAATTCCGACTCCTTCAAATCCATCACATCCCAAGCCACTCTAGCTGGCTTGCTCTTTACTTCACTCACCACCCAACACGCCCTCGCCGTAGACAACGTCACACCACCGCCACAGCCCGCGCCGCTGCTCCAGGCCCAGCCCACGAAGCCCAATTCCTCTCCCTTCTCTCAGAACCTCAACTTAACAGCACCAAAGCCACAACAGCAGGACCTCCCGGAAGGTAGCCAATGGCGCTACAGCGAGTTCTTGAACGCCGTGAAGAAGGGGAAGGTGGAAAGAGTCAGGTTCGCCAAAGAAGGGTCGGCTCTTCAGCTGACGGCGATTGACGGCCGTCGTGCCTCGGTGGTGGTCCCGAACGACCCGGACCTCATCGACATTCTGGCCATGAACGGCGTTGATATCTCCGTCTCCGAGGGAGACTCCGGAGGTGGGATATTCAACTTCATTGGGAATTTGCTGTTTCCGATAATCGCCTTCGCCGGGTTGTTCTTCCTTTTCAGGCGGGGACAGGGAGGTCCCGGAGGACCCGGTGGCCTCGGTGGGCCCATGGACTTCGGAAGGTCCAAGTCCAAGTTCCAGGAGGTTCCAGAAACTGGAGTTACTTTCTCTGATGTTGCTGGAGCTGACCAGGCCAAGCTGGAGTTGCAGGAGGTTGTTGATTTCTTGAAGAACCCGGATAAGTACACTGCTCTTGGAGCTAAAATCCCAAAGGGGTGTCTTCTGGTGGGGCCACCAGGTACCGGAAAGACCCTTCTGGCTCGTGCCGTCGCCGGTGAGGCTGGCACGCCGTTCTTCTCGTGCGCAGCTTCGGAGTTCGTGGAGCTGTTTGTTGGAGTTGGGGCCTCGAGAGTGAGGGATTTGTTTGAGAAGGCAAAGTCGAAAGCGCCGTGCATTGTGTTCATTGATGAGATTGATGCAGTTGGGAGGCAGAGAGGGGCAGGAATGGGAGGTGGAAATGACGAGAGAGAGCAGACTATTAATCAGTTGTTGACGGAGATGGATGGTTTTTCTGGTAATTCTGGTGTGATTGTGTTGGCGGCGACTAACAGGCCGGATGTTCTTGATTCAGCTCTGTTGAGGCCCGGAAGGTTTGACAGACAAGTAACCGTGGACAGGCCTGATGTTGCTGGGAGAGTTAAGATCCTGCAGGTGCACTCCAGAGGGAAGGCACTGGCAAAGGATGTGGACTTTGAAAAGATTGCAAGGAGAACGCCTGGTTTCACAGGAGCAGATCTACAGAACCTGATGAACGAAGCTGCCATTCTTGCAGCCAGACGTGAGCTCAAGGAAATAAGCAAAGATGAGATAGCTGATGCTCTGGAGCGAATCATTGCCGGACCAGAGAAGAAAAATGCTGTAGTCTCAGAGGAGAAGAAGAAATTAGTTGCTTACCATGAGGCTGGGCATGCTCTTGTTGGTGCCTTGATGCCGGAATATGATCCTGTAGCCAAGATATCCATCATCCCCCGTGGCCAAGCAGGTGGTCTAACCTTCTTTGCTCCAAGTGAAGAGAGACTCGAGTCTGGGCTGTACAGCAGAAGCTACCTGGAGAATCAAATGGCTGTTGCCCTTGGAGGAAGGGTGGCTGAAGAAGTTATCTTTGGTCAGGCGAATGTGACAACAGGAGCATCAAATGACTTCATGCAAGTTTCAAGGGTGGCAAGGCAGATGGTCGAGAGATTTGGATTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTAGTTCAGGTGGCAACCCCTTCTTAGGTCAACAGATGTCATCCCAAAAAGATTACTCCATGGCGACCGCTGATATCGTGGATGCAGAGGTGAGGGAGCTGGTAGAGAAAGCTTACAAAAGGGCCACGGAGATCATCACAACCCACATTGACATCCTCCACAAGTTGGCCAACCTCCTGATAGAGAAGGAAAGTGTTGATGGTGAAGAATTCATGAGCCTCTTTATTGATGGAAAGGCTGAGCTTTATGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

710

Amino Acids

76.2

Weight (kDa)

6.29

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	292 - 424	2.9e-45	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	447 - 489	4.1e-16	AAA+ lid domain
Peptidase_M41	PF01434	506 - 698	1.9e-72	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50250 AT5G42270
fragaria_vesca	FvH4_2g37610 FvH4_2g37610 FvH4_2g37610 FvH4_2g37610
malus_domestica	MD08G1003700.v1.1 MD15G1003200.v1.1
prunus_persica	Prupe.1G355600_v2.0.a1 Prupe.1G355600_v2.0.a1
pyrus_communis	pycom15g00230
rosa_chinensis	RchiOBHm_Chr6g0304121
rosa_laevigata	RLG00000011013
rosa_multiflora	Rmu_ssc0000218.1_g000001 Rmu_ssc0000218.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164050
rosa_rugosa	Rorug06G0327800
rosa_samantha	Rh6BG461000
rosa_wichuraiana	Rw6G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1297, 1628
AasI	GACNNNNNNGTC	1 cut(s)	672
Acc16I	TGCGCA	1 cut(s)	961
Acc36I	ACCTGC	2 cut(s)	1297, 1628
Acc65I	GGTACC	1 cut(s)	896
AccB1I	GGYRCC	2 cut(s)	896, 1577
AccB7I	CCANNNNNTGG	2 cut(s)	752, 2041
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	6 cut(s)	266, 276, 281, 661, 1196, 1944
AclWI	GGATC	2 cut(s)	1294, 1592
AcoI	YGGCCR	4 cut(s)	487, 540, 1630, 2043
AcsI	RAATTY	2 cut(s)	610, 2084
AcuI	CTGAAG	2 cut(s)	452, 1767
AfaI	GTAC	3 cut(s)	842, 898, 1691
AfiI	CCNNNNNNNGG	8 cut(s)	456, 588, 639, 752, 899, 1272, 1901, 2041
AgsI	TTSAA	6 cut(s)	175, 409, 598, 826, 1352, 1812
AjiI	CACGTC	1 cut(s)	1436
AjnI	CCWGG	6 cut(s)	288, 735, 786, 892, 1372, 1704
AjuI	GAANNNNNNNTTGG	4 cut(s)	716, 748, 1743, 1775
Alw21I	GWGCWC	2 cut(s)	1314, 1443
Alw26I	GTCTC	4 cut(s)	570, 571, 1525, 1666
Alw44I	GTGCAC	1 cut(s)	1310
AlwI	GGATC	2 cut(s)	1294, 1592
AlwNI	CAGNNNCTG	2 cut(s)	752, 1402
Ama87I	CYCGRG	2 cut(s)	1003, 1676
Aor13HI	TCCGGA	1 cut(s)	581
ApaI	GGGCCC	1 cut(s)	705
ApaLI	GTGCAC	1 cut(s)	1310
ApeKI	GCWGC	4 cut(s)	283, 962, 1415, 1427
ApoI	RAATTY	2 cut(s)	610, 2084
AseI	ATTAAT	1 cut(s)	1137
Asp718I	GGTACC	1 cut(s)	896
AspLEI	GCGC	4 cut(s)	280, 393, 962, 1045
AsuC2I	CCSGG	7 cut(s)	374, 521, 640, 678, 687, 833, 1242
AsuHPI	GGTGA	4 cut(s)	217, 944, 1978, 2090
AvaI	CYCGRG	2 cut(s)	1003, 1676
AvaII	GGWCC	7 cut(s)	367, 508, 523, 674, 683, 720, 1496
BaeGI	GKGCMC	2 cut(s)	705, 1314
BalI	TGGCCA	3 cut(s)	542, 1632, 2045
BanI	GGYRCC	2 cut(s)	896, 1577
BanII	GRGCYC	2 cut(s)	705, 1443
BauI	CACGAG	2 cut(s)	918, 955
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	2 cut(s)	1314, 1443
BbvI	GCAGC	4 cut(s)	270, 974, 1402, 1439
BccI	CCATC	7 cut(s)	188, 1150, 1154, 1625, 1822, 2069, 2099
BciT130I	CCWGG	6 cut(s)	290, 737, 788, 894, 1374, 1706
BcnI	CCSGG	7 cut(s)	374, 521, 640, 678, 687, 833, 1242
BcoDI	GTCTC	4 cut(s)	570, 571, 1525, 1666
BfaI	CTAG	2 cut(s)	33, 200
BfmI	CTRYAG	5 cut(s)	394, 1304, 1394, 1515, 1602
BfoI	RGCGCY	2 cut(s)	394, 1046
BfuAI	ACCTGC	2 cut(s)	1297, 1628
BglI	GCCNNNNNGGC	1 cut(s)	935
BglII	AGATCT	1 cut(s)	1390
BisI	GCNGC	6 cut(s)	281, 284, 963, 1197, 1416, 1428
BlpI	GCTNAGC	1 cut(s)	2115
BlsI	GCNGC	6 cut(s)	282, 285, 964, 1198, 1417, 1429
Bme18I	GGWCC	7 cut(s)	367, 508, 523, 674, 683, 720, 1496
BmeT110I	CYCGRG	2 cut(s)	1003, 1676
BmgBI	CACGTC	1 cut(s)	1436
BmiI	GGNNCC	9 cut(s)	510, 676, 685, 703, 744, 888, 898, 1000, 1579
BmsI	GCATC	5 cut(s)	1063, 1462, 1575, 1796, 1948
BoxI	GACNNNNGTC	2 cut(s)	489, 1678
BpiI	GAAGAC	1 cut(s)	869
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	7 cut(s)	272, 774, 798, 818, 1300, 1499, 1727
Bpu1102I	GCTNAGC	1 cut(s)	2115
BpuEI	CTTGAG	1 cut(s)	1427
BpuMI	CCSGG	7 cut(s)	374, 521, 640, 678, 687, 833, 1242
BsaBI	GATNNNNATC	1 cut(s)	1616
BsaJI	CCNNGG	9 cut(s)	498, 570, 694, 705, 1266, 1627, 1729, 1935, 2001
BsaWI	WCCGGW	2 cut(s)	581, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	1725, 1755
Bsc4I	CCNNNNNNNGG	8 cut(s)	456, 588, 639, 752, 899, 1272, 1901, 2041
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	757, 1335
Bse3DI	GCAATG	1 cut(s)	1488
Bse8I	GATNNNNATC	1 cut(s)	1616
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	6 cut(s)	290, 737, 788, 894, 1374, 1706
BseDI	CCNNGG	9 cut(s)	498, 570, 694, 705, 1266, 1627, 1729, 1935, 2001
BseGI	GGATG	8 cut(s)	185, 1165, 1219, 1345, 1620, 1916, 1963, 2028
BseJI	GATNNNNATC	1 cut(s)	1616
BseLI	CCNNNNNNNGG	8 cut(s)	456, 588, 639, 752, 899, 1272, 1901, 2041
BseMI	GCAATG	1 cut(s)	1488
BseMII	CTCAG	3 cut(s)	341, 1536, 2106
BseNI	ACTGG	2 cut(s)	757, 1335
BseRI	GAGGAG	2 cut(s)	54, 1541
BseSI	GKGCMC	2 cut(s)	705, 1314
BseX3I	CGGCCG	1 cut(s)	487
BseXI	GCAGC	4 cut(s)	270, 974, 1402, 1439
BseYI	CCCAGC	3 cut(s)	294, 1286, 1559
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	2 cut(s)	490, 1944
BshNI	GGYRCC	2 cut(s)	896, 1577
BsiEI	CGRYCG	2 cut(s)	490, 1944
BsiHKAI	GWGCWC	2 cut(s)	1314, 1443
BsiHKCI	CYCGRG	2 cut(s)	1003, 1676
BslFI	GGGAC	3 cut(s)	494, 660, 678
BslI	CCNNNNNNNGG	8 cut(s)	456, 588, 639, 752, 899, 1272, 1901, 2041
BsmAI	GTCTC	4 cut(s)	570, 571, 1525, 1666
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	3 cut(s)	494, 660, 678
BsoBI	CYCGRG	2 cut(s)	1003, 1676
Bsp120I	GGGCCC	1 cut(s)	701
Bsp1286I	GDGCHC	3 cut(s)	705, 1314, 1443
Bsp13I	TCCGGA	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	1689
Bsp143I	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
Bsp1720I	GCTNAGC	1 cut(s)	2115
Bsp19I	CCATGG	2 cut(s)	705, 1935
BspACI	CCGC	6 cut(s)	266, 276, 281, 661, 1196, 1944
BspCNI	CTCAG	3 cut(s)	340, 1535, 2107
BspEI	TCCGGA	1 cut(s)	581
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	2088
BspLI	GGNNCC	9 cut(s)	510, 676, 685, 703, 744, 888, 898, 1000, 1579
BspMAI	CTGCAG	1 cut(s)	1308
BspMI	ACCTGC	2 cut(s)	1297, 1628
BspPI	GGATC	2 cut(s)	1294, 1592
BspQI	GCTCTTC	1 cut(s)	471
BspT107I	GGYRCC	2 cut(s)	896, 1577
BsrDI	GCAATG	1 cut(s)	1488
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	1689
BsrI	ACTGG	2 cut(s)	757, 1335
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	9 cut(s)	498, 570, 694, 705, 1266, 1627, 1729, 1935, 2001
BssMI	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
BssSI	CACGAG	2 cut(s)	918, 955
BssT1I	CCWWGG	3 cut(s)	705, 1729, 1935
Bst2BI	CACGAG	2 cut(s)	918, 955
Bst2UI	CCWGG	6 cut(s)	290, 737, 788, 894, 1374, 1706
Bst4CI	ACNGT	1 cut(s)	1267
Bst6I	CTCTTC	4 cut(s)	34, 114, 471, 1662
BstAUI	TGTACA	1 cut(s)	1689
BstC8I	GCNNGC	6 cut(s)	205, 209, 276, 940, 944, 1566
BstDEI	CTNAG	4 cut(s)	327, 1522, 1900, 2115
BstDSI	CCRYGG	5 cut(s)	705, 1266, 1627, 1935, 2001
BstF5I	GGATG	8 cut(s)	185, 1165, 1219, 1345, 1620, 1916, 1963, 2028
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	2 cut(s)	394, 1046
BstHHI	GCGC	4 cut(s)	280, 393, 962, 1045
BstKTI	GATC	5 cut(s)	89, 1302, 1393, 1600, 2010
BstMAI	GTCTC	4 cut(s)	570, 571, 1525, 1666
BstMBI	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
BstMCI	CGRYCG	2 cut(s)	490, 1944
BstNI	CCWGG	6 cut(s)	290, 737, 788, 894, 1374, 1706
BstNSI	RCATGY	1 cut(s)	1568
BstPAI	GACNNNNGTC	2 cut(s)	489, 1678
BstSFI	CTRYAG	5 cut(s)	394, 1304, 1394, 1515, 1602
BstSLI	GKGCMC	2 cut(s)	705, 1314
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	270, 974, 1402, 1439
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	2 cut(s)	1299, 1390
BstXI	CCANNNNNNTGG	2 cut(s)	1559, 1640
BstYI	RGATCY	2 cut(s)	1299, 1390
BstZI	CGGCCG	1 cut(s)	487
BtgI	CCRYGG	5 cut(s)	705, 1266, 1627, 1935, 2001
BtrI	CACGTC	1 cut(s)	1436
BtsCI	GGATG	8 cut(s)	185, 1165, 1219, 1345, 1620, 1916, 1963, 2028
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	2 cut(s)	843, 1328
BveI	ACCTGC	2 cut(s)	1297, 1628
Cac8I	GCNNGC	6 cut(s)	205, 209, 276, 940, 944, 1566
CaiI	CAGNNNCTG	2 cut(s)	752, 1402
CciI	TCATGA	1 cut(s)	2088
CfoI	GCGC	4 cut(s)	280, 393, 962, 1045
Cfr10I	RCCGGY	1 cut(s)	929
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	3 cut(s)	841, 897, 1690
CspCI	CAANNNNNGTGG	2 cut(s)	1323, 1358
CviAII	CATG	7 cut(s)	544, 706, 1553, 1565, 1801, 1936, 2089
CviQI	GTAC	3 cut(s)	841, 897, 1690
DdeI	CTNAG	4 cut(s)	327, 1522, 1900, 2115
DpnI	GATC	5 cut(s)	88, 1301, 1392, 1599, 2009
DpnII	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
DrdI	GACNNNNNNGTC	1 cut(s)	672
DseDI	GACNNNNNNGTC	1 cut(s)	672
EaeI	YGGCCR	4 cut(s)	487, 540, 1630, 2043
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	4 cut(s)	34, 114, 471, 1662
EarI	CTCTTC	4 cut(s)	34, 114, 471, 1662
Ecl136II	GAGCTC	1 cut(s)	1441
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	3 cut(s)	705, 1729, 1935
Eco147I	AGGCCT	1 cut(s)	1276
Eco24I	GRGCYC	2 cut(s)	705, 1443
Eco32I	GATATC	3 cut(s)	559, 1614, 1951
Eco47I	GGWCC	7 cut(s)	367, 508, 523, 674, 683, 720, 1496
Eco52I	CGGCCG	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	1441
Eco57I	CTGAAG	2 cut(s)	452, 1767
Eco88I	CYCGRG	2 cut(s)	1003, 1676
EcoICRI	GAGCTC	1 cut(s)	1441
EcoO109I	RGGNCCY	4 cut(s)	367, 674, 683, 999
EcoRI	GAATTC	1 cut(s)	2084
EcoRII	CCWGG	6 cut(s)	288, 735, 786, 892, 1372, 1704
EcoRV	GATATC	3 cut(s)	559, 1614, 1951
EcoT14I	CCWWGG	3 cut(s)	705, 1729, 1935
EcoT38I	GRGCYC	2 cut(s)	705, 1443
ErhI	CCWWGG	3 cut(s)	705, 1729, 1935
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	7 cut(s)	547, 709, 1556, 1568, 1804, 1939, 2092
FaqI	GGGAC	3 cut(s)	494, 660, 678
FatI	CATG	7 cut(s)	543, 705, 1552, 1564, 1800, 1935, 2088
FauI	CCCGC	2 cut(s)	283, 654
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	281, 284, 963, 1197, 1416, 1428
FokI	GGATG	8 cut(s)	172, 1172, 1226, 1352, 1607, 1903, 1970, 2015
FriOI	GRGCYC	2 cut(s)	705, 1443
Fsp4HI	GCNGC	6 cut(s)	281, 284, 963, 1197, 1416, 1428
FspBI	CTAG	2 cut(s)	33, 200
FspI	TGCGCA	1 cut(s)	961
GlaI	GCGC	4 cut(s)	279, 392, 961, 1044
GluI	GCNGC	6 cut(s)	281, 284, 963, 1197, 1416, 1428
GsaI	CCCAGC	3 cut(s)	298, 1290, 1563
GsuI	CTGGAG	7 cut(s)	272, 774, 798, 818, 1300, 1499, 1727
HaeII	RGCGCY	2 cut(s)	394, 1046
HhaI	GCGC	4 cut(s)	280, 393, 962, 1045
Hin1II	CATG	7 cut(s)	547, 709, 1556, 1568, 1804, 1939, 2092
Hin6I	GCGC	4 cut(s)	278, 391, 960, 1043
HinP1I	GCGC	4 cut(s)	278, 391, 960, 1043
HincII	GTYRAC	2 cut(s)	1149, 1907
HindII	GTYRAC	2 cut(s)	1149, 1907
HindIII	AAGCTT	2 cut(s)	131, 1986
HinfI	GANTC	9 cut(s)	167, 438, 578, 1223, 1485, 1674, 1679, 1711, 1845
HphI	GGTGA	4 cut(s)	217, 944, 1978, 2090
Hpy166II	GTNNAC	7 cut(s)	250, 843, 1149, 1270, 1312, 1345, 1907
Hpy188I	TCNGA	8 cut(s)	166, 330, 571, 624, 716, 769, 970, 1525
Hpy8I	GTNNAC	7 cut(s)	250, 843, 1149, 1270, 1312, 1345, 1907
Hpy99I	CGWCG	2 cut(s)	495, 929
HpyCH4III	ACNGT	1 cut(s)	1267
HpyCH4IV	ACGT	2 cut(s)	255, 1435
HpyF3I	CTNAG	4 cut(s)	327, 1522, 1900, 2115
HpySE526I	ACGT	2 cut(s)	255, 1435
Hsp92II	CATG	7 cut(s)	547, 709, 1556, 1568, 1804, 1939, 2092
HspAI	GCGC	4 cut(s)	278, 391, 960, 1043
Kpn2I	TCCGGA	1 cut(s)	581
KpnI	GGTACC	1 cut(s)	900
Kzo9I	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	9 cut(s)	291, 779, 854, 979, 1385, 1480, 1663, 1784, 1972
Lsp1109I	GCAGC	4 cut(s)	270, 974, 1402, 1439
LweI	GCATC	5 cut(s)	1063, 1462, 1575, 1796, 1948
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	2 cut(s)	33, 200
MaeII	ACGT	2 cut(s)	255, 1435
MaeIII	GTNAC	4 cut(s)	256, 757, 1261, 1774
MalI	GATC	5 cut(s)	88, 1301, 1392, 1599, 2009
MboI	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
MflI	RGATCY	2 cut(s)	1299, 1390
MhlI	GDGCHC	3 cut(s)	705, 1314, 1443
MlsI	TGGCCA	3 cut(s)	542, 1632, 2045
MluCI	AATT	7 cut(s)	138, 160, 310, 610, 1174, 1538, 2084
MluNI	TGGCCA	3 cut(s)	542, 1632, 2045
MlyI	GAGTC	5 cut(s)	161, 447, 572, 1668, 1688
MmeI	TCCRAC	3 cut(s)	92, 189, 970
Mox20I	TGGCCA	3 cut(s)	542, 1632, 2045
MroI	TCCGGA	1 cut(s)	581
MscI	TGGCCA	3 cut(s)	542, 1632, 2045
MseI	TTAA	3 cut(s)	341, 1137, 1296
Msp20I	TGGCCA	3 cut(s)	542, 1632, 2045
MspA1I	CMGCKG	3 cut(s)	283, 472, 1946
MvaI	CCWGG	6 cut(s)	290, 737, 788, 894, 1374, 1706
MvnI	CGCG	1 cut(s)	278
NciI	CCSGG	7 cut(s)	374, 521, 640, 678, 687, 833, 1242
NcoI	CCATGG	2 cut(s)	705, 1935
NdeII	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
NlaIII	CATG	7 cut(s)	547, 709, 1556, 1568, 1804, 1939, 2092
NlaIV	GGNNCC	9 cut(s)	510, 676, 685, 703, 744, 888, 898, 1000, 1579
NmuCI	GTSAC	2 cut(s)	256, 1774
NsbI	TGCGCA	1 cut(s)	961
NspI	RCATGY	1 cut(s)	1568
PaeI	GCATGC	1 cut(s)	1568
PaeR7I	CTCGAG	2 cut(s)	1003, 1676
PagI	TCATGA	1 cut(s)	2088
PaqCI	CACCTGC	2 cut(s)	1297, 1628
PceI	AGGCCT	1 cut(s)	1276
PciSI	GCTCTTC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 1043
PfeI	GAWTC	4 cut(s)	1223, 1485, 1711, 1845
PflFI	GACNNNGTC	1 cut(s)	254
PflMI	CCANNNNNTGG	2 cut(s)	752, 2041
PfoI	TCCNGGA	3 cut(s)	372, 676, 735
PkrI	GCNGC	6 cut(s)	282, 285, 964, 1198, 1417, 1429
PleI	GAGTC	5 cut(s)	161, 446, 572, 1668, 1687
PpsI	GAGTC	5 cut(s)	161, 446, 572, 1668, 1687
PpuMI	RGGWCCY	3 cut(s)	367, 674, 683
PshAI	GACNNNNGTC	2 cut(s)	489, 1678
PshBI	ATTAAT	1 cut(s)	1137
Psp124BI	GAGCTC	1 cut(s)	1443
Psp5II	RGGWCCY	3 cut(s)	367, 674, 683
Psp6I	CCWGG	6 cut(s)	288, 735, 786, 892, 1372, 1704
PspFI	CCCAGC	3 cut(s)	294, 1286, 1559
PspGI	CCWGG	6 cut(s)	288, 735, 786, 892, 1372, 1704
PspN4I	GGNNCC	9 cut(s)	510, 676, 685, 703, 744, 888, 898, 1000, 1579
PspOMI	GGGCCC	1 cut(s)	701
PspPPI	RGGWCCY	3 cut(s)	367, 674, 683
PspXI	VCTCGAGB	1 cut(s)	1676
PstI	CTGCAG	1 cut(s)	1308
PstNI	CAGNNNCTG	2 cut(s)	752, 1402
PsuI	RGATCY	2 cut(s)	1299, 1390
PsyI	GACNNNGTC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	3 cut(s)	842, 898, 1691
RsaNI	GTAC	3 cut(s)	841, 897, 1690
SacI	GAGCTC	1 cut(s)	1443
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	341, 1137, 1296
SatI	GCNGC	6 cut(s)	281, 284, 963, 1197, 1416, 1428
Sau3AI	GATC	5 cut(s)	86, 1299, 1390, 1597, 2007
SbfI	CCTGCAGG	1 cut(s)	1308
SchI	GAGTC	5 cut(s)	161, 447, 572, 1668, 1688
SdaI	CCTGCAGG	1 cut(s)	1308
SduI	GDGCHC	3 cut(s)	705, 1314, 1443
SexAI	ACCWGGT	1 cut(s)	892
SfaNI	GCATC	5 cut(s)	1063, 1462, 1575, 1796, 1948
SfcI	CTRYAG	5 cut(s)	394, 1304, 1394, 1515, 1602
Sfr274I	CTCGAG	2 cut(s)	1003, 1676
SgrAI	CRCCGGYG	1 cut(s)	929
SinI	GGWCC	7 cut(s)	367, 508, 523, 674, 683, 720, 1496
SlaI	CTCGAG	2 cut(s)	1003, 1676
SmlI	CTYRAG	3 cut(s)	1003, 1442, 1676
SmoI	CTYRAG	3 cut(s)	1003, 1442, 1676
SphI	GCATGC	1 cut(s)	1568
Sse8387I	CCTGCAGG	1 cut(s)	1308
Sse9I	AATT	7 cut(s)	138, 160, 310, 610, 1174, 1538, 2084
SseBI	AGGCCT	1 cut(s)	1276
SsiI	CCGC	6 cut(s)	266, 276, 281, 661, 1196, 1944
SspMI	CTAG	2 cut(s)	33, 200
SstI	GAGCTC	1 cut(s)	1443
StuI	AGGCCT	1 cut(s)	1276
StyI	CCWWGG	3 cut(s)	705, 1729, 1935
TaaI	ACNGT	1 cut(s)	1267
TaiI	ACGT	2 cut(s)	258, 1438
TaqI	TCGA	5 cut(s)	531, 1004, 1037, 1677, 1833
TasI	AATT	7 cut(s)	138, 160, 310, 610, 1174, 1538, 2084
TatI	WGTACW	2 cut(s)	840, 1689
TauI	GCSGC	2 cut(s)	283, 1199
TfiI	GAWTC	4 cut(s)	1223, 1485, 1711, 1845
Tru1I	TTAA	3 cut(s)	341, 1137, 1296
Tru9I	TTAA	3 cut(s)	341, 1137, 1296
TscAI	CASTG	2 cut(s)	850, 1335
TseFI	GTSAC	2 cut(s)	256, 1774
TseI	GCWGC	4 cut(s)	283, 962, 1415, 1427
Tsp45I	GTSAC	2 cut(s)	256, 1774
TspDTI	ATGAA	7 cut(s)	165, 560, 592, 1048, 1421, 1789, 2077
TspGWI	ACGGA	4 cut(s)	102, 553, 1166, 2018
TspRI	CASTG	2 cut(s)	850, 1335
Tth111I	GACNNNGTC	1 cut(s)	254
Van91I	CCANNNNNTGG	2 cut(s)	752, 2041
VneI	GTGCAC	1 cut(s)	1310
VpaK11BI	GGWCC	7 cut(s)	367, 508, 523, 674, 683, 720, 1496
VspI	ATTAAT	1 cut(s)	1137
XapI	RAATTY	2 cut(s)	610, 2084
XceI	RCATGY	1 cut(s)	1568
XhoI	CTCGAG	2 cut(s)	1003, 1676
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	2 cut(s)	33, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.