Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008272

Physical Location & Seq

Genomic Coordinates Forward (+)

3761233 .. 3762834

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGTTTATTTGAAGAAAATGGTTTCGATGTTGAAGAACTTGATTTGTGCTGCAAACAAGTTGAGAATCGGTCAACGGAGTTGGTTGTGTTCTCCATATTCCGCCTTTCAGATGATACAAACTCCTCTACCAAAACAGAAGCAGCAACCGAAGTAGATCATCTTGGTCAAGAGAAAATCGTGCTAGAGGTCAATGAGAAGATCTTGAAGAAACCTGTGAATGATTTGGAGGTTGACATTTCTGACGGTGTAGTGATGGAAATGTCTGGTGTCTTACCTTCCAATGACAACGAGGTAATTGAGCTAGAGCTAGGTGATTTGACTTTCAAGATAGAAGTGTTATCCAAAGTGGACCAACGCACATGCAAATCAACTGGTTTAATGTTGTGGGAATCAGCTCGGTTCATGGCTTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_12 Methyltransf_16 Methyltransf_23 Methyltransf_25

Protein Analysis

140

Amino Acids

15.58

Weight (kDa)

4.28

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26200 AT2G26200
fragaria_vesca	FvH4_2g31511 FvH4_2g31511 FvH4_2g31511 FvH4_2g31511 FvH4_2g31511
malus_domestica	MD08G1065700.v1.1 MD15G1055800.v1.1
prunus_persica	Prupe.1G408900_v2.0.a1 Prupe.1G408900_v2.0.a1 Prupe.1G408900_v2.0.a1
pyrus_communis	pycom08g05430
rosa_chinensis	RchiOBHm_Chr6g0311271
rosa_multiflora	Rmu_sc0006559.1_g000001 Rmu_sc0008536.1_g000002 Rmu_sc0013795.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157810
rosa_samantha	Rh6AG501600 Rh6BG512300 Rh6CG518000 Rh6DG504300
rosa_wichuraiana	Rw6G043680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	14, 35, 208, 328
AluBI	AGCT	3 cut(s)	304, 310, 398
AluI	AGCT	3 cut(s)	304, 310, 398
ApeKI	GCWGC	2 cut(s)	51, 143
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	38, 155
BccI	CCATC	1 cut(s)	250
BfaI	CTAG	3 cut(s)	185, 305, 311
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	2 cut(s)	52, 144
BlsI	GCNGC	2 cut(s)	53, 145
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	38, 155
Bsp143I	GATC	2 cut(s)	157, 201
BspACI	CCGC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	379
BssMI	GATC	2 cut(s)	157, 201
Bst4CI	ACNGT	1 cut(s)	248
BstKTI	GATC	2 cut(s)	160, 204
BstMBI	GATC	2 cut(s)	157, 201
BstNSI	RCATGY	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	38, 155
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	352
CviAII	CATG	2 cut(s)	363, 406
CviJI	RGCY	4 cut(s)	304, 310, 398, 410
CviKI_1	RGCY	4 cut(s)	304, 310, 398, 410
DpnI	GATC	2 cut(s)	159, 203
DpnII	GATC	2 cut(s)	157, 201
EciI	GGCGGA	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	352
FaeI	CATG	2 cut(s)	366, 409
FaiI	YATR	3 cut(s)	98, 364, 407
FatI	CATG	2 cut(s)	362, 405
Fnu4HI	GCNGC	2 cut(s)	52, 144
Fsp4HI	GCNGC	2 cut(s)	52, 144
FspBI	CTAG	3 cut(s)	185, 305, 311
GluI	GCNGC	2 cut(s)	52, 144
Hin1II	CATG	2 cut(s)	366, 409
HincII	GTYRAC	2 cut(s)	75, 235
HindII	GTYRAC	2 cut(s)	75, 235
HinfI	GANTC	2 cut(s)	67, 392
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	75, 235, 352
Hpy188I	TCNGA	2 cut(s)	112, 244
Hpy188III	TCNNGA	3 cut(s)	170, 205, 328
Hpy8I	GTNNAC	3 cut(s)	75, 235, 352
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	54, 366
Hsp92II	CATG	2 cut(s)	366, 409
Kzo9I	GATC	2 cut(s)	157, 201
LpnPI	CCDG	3 cut(s)	228, 252, 360
Lsp1109I	GCAGC	2 cut(s)	38, 155
MaeI	CTAG	3 cut(s)	185, 305, 311
MalI	GATC	2 cut(s)	159, 203
MboI	GATC	2 cut(s)	157, 201
MboII	GAAGA	4 cut(s)	26, 47, 211, 220
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	1 cut(s)	297
MnlI	CCTC	4 cut(s)	136, 181, 223, 286
MseI	TTAA	2 cut(s)	380, 418
NdeII	GATC	2 cut(s)	157, 201
NlaIII	CATG	2 cut(s)	366, 409
NspI	RCATGY	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	67, 392
PkrI	GCNGC	2 cut(s)	53, 145
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	380, 418
SatI	GCNGC	2 cut(s)	52, 144
Sau3AI	GATC	2 cut(s)	157, 201
Sau96I	GGNCC	1 cut(s)	352
SetI	ASST	9 cut(s)	192, 217, 234, 280, 297, 306, 312, 316, 400
SinI	GGWCC	1 cut(s)	352
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	3 cut(s)	185, 305, 311
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	67, 392
Tru1I	TTAA	2 cut(s)	380, 418
Tru9I	TTAA	2 cut(s)	380, 418
TseI	GCWGC	2 cut(s)	51, 143
TspDTI	ATGAA	1 cut(s)	394
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	352
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	3 cut(s)	185, 305, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.