Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008272

Physical Location & Seq

Genomic Coordinates Forward (+)

35787294 .. 35791305

Gene Structure 4012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G408900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGCATCCAATGTAAAAAAGGGTTCAGAAGAAGAGCAACCAACCTCAAGATTGCAGATTTACTCCACCTCTGATACGCTCTCCCCTTTCTGGAGAGACAAGTATGAAAAAGATGCCAAAAAGTATTGGGATGTCTTTTACAAGCGCCATCAAGACAGGTTTTTTAAAGATCGACATTACCTGGACAAGGAATGGGGCCAATATTTCTCTGGAGCTGGGCGGAAAGTTATTTTAGAGGTTGGCTGCGGAGCTGGTAACACCATTTTTCCACTGCTTGAGACATACACAGATGCTTTTGTCCATGCATGTGATTTTTCACCACATGCTGTTAACTTGGTTAAGGCACATAAAGACTTCACAGATAGCCGTGTTAGTGCGTTTGTTTGTGATCTAACCATTGATGATCTGAGCAAGCAGATTTCTTCATCGTCCGTAGATATTGTAACCATGATTTTTGTGTTATCTGCAGTGTCTCCAGAGAAGATGCCTCTAGTATTGAAGAATGTTAGAAAAGTTCTCAAGCCAAGTGGTCGTGTCCTGTTTCGTGATTATGCTACTGGTGACCTTGCTCAGGAAAGATTGAATTGCAAGGACCAAAAAATAAGTGAAAACTTTTATGTCAGGGGTGATGGCACTCGTGCTTTCTACTTTTCAAATGAGTTCTTGACAAGCTTATTTAAAGAAAATGGTTTCAATGTTGAACAACTTGACTTGTGCTGCAAACAAGTTGAGAACCGGTCAAGAGAGTTGGTGATGAATCGGCGTTGGGTTCAAGCTGTATTCCGCCTTTCAGATGGTACAAACTCCTCTACCAACACTGAAGCTGCAATCAGGGTAAATCATCTTGGTCAAGAGAAAATTGAGCTGGATGTCAATGGGAACATCTTGAAGCAGCCAGAGAACGATTTAGAGGTTGATATGTCCGACGGTGTGGCAGCGGAAATGTTTGGTATTTCACCTTCCAGTGATAATGAGGTAATTGAGCTTGAGCTAGGTGGTTGGACTTTCAAGATCGAAGTGTTATCGAAAGTGCACCAACACACTTGCAAATCAACTGGTTTGATGTTGTGGGAATCAGCTCGGTTTATGGCTTCTGTTTTAGCCAAAAATCCAGCTATTGTCTCTGGGAAAAGGGTGTTGGAGTTGGGGTGTGGCTCCGGGGGTATTTGCTCTATGATTGCTGCTAGATCTGCTGACCTCGTGCTCGGCACAGATGGAGACACAAATGCACTTGACCTACTGAAGCAAAATGTCAATTCAAATCTCAGGCCACCATTGCTGGACAAACTCATTACAAGAAGATTAGAGTGGGGAAATAGAGACCAAATAGAAGCCATCAAAGAAGCTCATGCTGGAGGTTTTGATATCATCATAGGCACAGATGTCACTTACATAGCTGAAGCTGTTTTGCCTTTATTTCAAACTGCAAAGGAGTTGATTTCATCTAATAGAAGCATTGGTGCCGATTTGGAACCAGCCCTAATTCTCTGTCATATTTTCCGTCGGGTAGATGAGCCTTCCATACTTTCAGCTGCATCTCATTTCGGGTTTAGGCTAGTCGATAAGTGGCCGATAGGAATTCCTACTAATCCATCACCAAGCATCATCAAAACTTGGTTTCCTGAGAATGGCTCGGAGCATGTTGAGAGTGGAGCATTACATATCTTGTATTTCCACATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_12 Methyltransf_16 Methyltransf_23 Methyltransf_25

Protein Analysis

562

Amino Acids

62.88

Weight (kDa)

5.78

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26200 AT2G26200
fragaria_vesca	FvH4_2g31511 FvH4_2g31511 FvH4_2g31511 FvH4_2g31511 FvH4_2g31511
malus_domestica	MD08G1065700.v1.1 MD15G1055800.v1.1
prunus_persica	Prupe.1G408900_v2.0.a1 Prupe.1G408900_v2.0.a1 Prupe.1G408900_v2.0.a1
pyrus_communis	pycom08g05430
rosa_chinensis	RchiOBHm_Chr6g0311271
rosa_multiflora	Rmu_sc0006559.1_g000001 Rmu_sc0008536.1_g000002 Rmu_sc0013795.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157810
rosa_samantha	Rh6AG501600 Rh6BG512300 Rh6CG518000 Rh6DG504300
rosa_wichuraiana	Rw6G043680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1460
AciI	CCGC	4 cut(s)	220, 246, 784, 938
AcoI	YGGCCR	1 cut(s)	1568
AcsI	RAATTY	1 cut(s)	1578
AcuI	CTGAAG	3 cut(s)	840, 1262, 1419
AfaI	GTAC	1 cut(s)	799
AfiI	CCNNNNNNNGG	4 cut(s)	90, 187, 571, 1628
AgeI	ACCGGT	1 cut(s)	735
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	1121, 1153
Alw21I	GWGCWC	2 cut(s)	1035, 1206
Alw26I	GTCTC	6 cut(s)	90, 272, 477, 1126, 1212, 1314
Alw44I	GTGCAC	1 cut(s)	1031
AoxI	GGCC	3 cut(s)	196, 1268, 1568
ApaLI	GTGCAC	1 cut(s)	1031
ApeKI	GCWGC	7 cut(s)	243, 717, 824, 892, 935, 1181, 1532
ApoI	RAATTY	1 cut(s)	1578
AsiGI	ACCGGT	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	196, 592
AsuC2I	CCSGG	1 cut(s)	1159
AsuHPI	GGTGA	6 cut(s)	309, 572, 638, 763, 948, 1587
AvaII	GGWCC	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	1035
BanI	GGYRCC	1 cut(s)	1460
BarI	GAAGNNNNNNTAC	2 cut(s)	943, 975
BauI	CACGAG	2 cut(s)	636, 1199
Bbv12I	GWGCWC	2 cut(s)	1035, 1206
BbvI	GCAGC	7 cut(s)	230, 704, 811, 904, 947, 1168, 1519
BccI	CCATC	6 cut(s)	156, 623, 788, 1208, 1343, 1600
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	1159
BcoDI	GTCTC	6 cut(s)	90, 272, 477, 1126, 1212, 1314
BfaI	CTAG	4 cut(s)	491, 992, 1185, 1556
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	148
BglII	AGATCT	1 cut(s)	1187
BisI	GCNGC	7 cut(s)	244, 718, 825, 893, 936, 1182, 1533
BlsI	GCNGC	7 cut(s)	245, 719, 826, 894, 937, 1183, 1534
Bme1390I	CCNGG	2 cut(s)	182, 1159
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	196, 592
BmiI	GGNNCC	4 cut(s)	197, 1156, 1462, 1473
BmrFI	CCNGG	2 cut(s)	182, 1159
BmsI	GCATC	6 cut(s)	14, 103, 280, 474, 1544, 1611
BplI	GAGNNNNNCTC	2 cut(s)	1616, 1648
BpmI	CTGGAG	4 cut(s)	112, 231, 459, 1374
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	4 cut(s)	31, 296, 503, 1007
BpuMI	CCSGG	1 cut(s)	1159
BsaI	GGTCTC	1 cut(s)	1314
BsaJI	CCNNGG	1 cut(s)	1158
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	1133, 1163
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 187, 571, 1628
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	3 cut(s)	562, 963, 1060
Bse3DI	GCAATG	1 cut(s)	1274
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	1158
BseGI	GGATG	3 cut(s)	5, 136, 874
BseLI	CCNNNNNNNGG	4 cut(s)	90, 187, 571, 1628
BseMI	GCAATG	1 cut(s)	1274
BseMII	CTCAG	4 cut(s)	398, 584, 1279, 1614
BseNI	ACTGG	3 cut(s)	562, 963, 1060
BseRI	GAGGAG	1 cut(s)	796
BseSI	GKGCMC	1 cut(s)	1035
BseXI	GCAGC	7 cut(s)	230, 704, 811, 904, 947, 1168, 1519
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	3 cut(s)	198, 1270, 1570
BshNI	GGYRCC	1 cut(s)	1460
BshTI	ACCGGT	1 cut(s)	735
BsiHKAI	GWGCWC	2 cut(s)	1035, 1206
BsiSI	CCGG	2 cut(s)	736, 1158
BslI	CCNNNNNNNGG	4 cut(s)	90, 187, 571, 1628
BsmAI	GTCTC	6 cut(s)	90, 272, 477, 1126, 1212, 1314
BsnI	GGCC	3 cut(s)	198, 1270, 1570
Bso31I	GGTCTC	1 cut(s)	1314
Bsp1286I	GDGCHC	2 cut(s)	1035, 1206
Bsp143I	GATC	5 cut(s)	169, 388, 403, 1011, 1187
BspACI	CCGC	4 cut(s)	220, 246, 784, 938
BspANI	GGCC	3 cut(s)	198, 1270, 1570
BspCNI	CTCAG	4 cut(s)	399, 583, 1278, 1615
BspLI	GGNNCC	4 cut(s)	197, 1156, 1462, 1473
BspMAI	CTGCAG	1 cut(s)	469
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	1460
BspTNI	GGTCTC	1 cut(s)	1314
BsrDI	GCAATG	1 cut(s)	1274
BsrFI	RCCGGY	1 cut(s)	735
BsrI	ACTGG	3 cut(s)	562, 963, 1060
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	1 cut(s)	1158
BssMI	GATC	5 cut(s)	169, 388, 403, 1011, 1187
BssSI	CACGAG	2 cut(s)	636, 1199
Bst2BI	CACGAG	2 cut(s)	636, 1199
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	4 cut(s)	407, 570, 1265, 1623
BstEII	GGTNACC	1 cut(s)	560
BstENI	CCTNNNNNAGG	2 cut(s)	185, 569
BstF5I	GGATG	3 cut(s)	5, 136, 874
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	5 cut(s)	172, 391, 406, 1014, 1190
BstMAI	GTCTC	6 cut(s)	90, 272, 477, 1126, 1212, 1314
BstMBI	GATC	5 cut(s)	169, 388, 403, 1011, 1187
BstMWI	GCNNNNNNNGC	2 cut(s)	1190, 1276
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	3 cut(s)	309, 326, 1643
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	180, 1157
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	1035
BstV1I	GCAGC	7 cut(s)	230, 704, 811, 904, 947, 1168, 1519
BstX2I	RGATCY	1 cut(s)	1187
BstYI	RGATCY	1 cut(s)	1187
BsuRI	GGCC	3 cut(s)	198, 1270, 1570
BtsCI	GGATG	3 cut(s)	5, 136, 874
BtsI	GCAGTG	2 cut(s)	269, 474
BtsIMutI	CAGTG	4 cut(s)	269, 474, 816, 970
Cac8I	GCNNGC	1 cut(s)	413
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	2 cut(s)	196, 592
Csp6I	GTAC	1 cut(s)	798
CspAI	ACCGGT	1 cut(s)	735
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	7 cut(s)	302, 306, 323, 448, 1349, 1640, 1678
CviQI	GTAC	1 cut(s)	798
DdeI	CTNAG	4 cut(s)	407, 570, 1265, 1623
DpnI	GATC	5 cut(s)	171, 390, 405, 1013, 1189
DpnII	GATC	5 cut(s)	169, 388, 403, 1011, 1187
DraI	TTTAAA	2 cut(s)	166, 679
EaeI	YGGCCR	1 cut(s)	1568
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	2 cut(s)	235, 773
Eco31I	GGTCTC	1 cut(s)	1314
Eco32I	GATATC	1 cut(s)	1366
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	3 cut(s)	840, 1262, 1419
Eco91I	GGTNACC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	2 cut(s)	185, 569
EcoO65I	GGTNACC	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	1578
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	1366
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	7 cut(s)	305, 309, 326, 451, 1352, 1643, 1681
FatI	CATG	7 cut(s)	301, 305, 322, 447, 1348, 1639, 1677
Fnu4HI	GCNGC	7 cut(s)	244, 718, 825, 893, 936, 1182, 1533
FokI	GGATG	2 cut(s)	143, 881
Fsp4HI	GCNGC	7 cut(s)	244, 718, 825, 893, 936, 1182, 1533
FspBI	CTAG	4 cut(s)	491, 992, 1185, 1556
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	7 cut(s)	244, 718, 825, 893, 936, 1182, 1533
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	4 cut(s)	112, 231, 459, 1374
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	198, 1270, 1570
HapII	CCGG	2 cut(s)	736, 1158
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	7 cut(s)	305, 309, 326, 451, 1352, 1643, 1681
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	2 cut(s)	757, 1073
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	736, 1158
HphI	GGTGA	6 cut(s)	309, 572, 638, 763, 948, 1587
Hpy166II	GTNNAC	2 cut(s)	331, 1033
Hpy188I	TCNGA	6 cut(s)	28, 73, 408, 793, 925, 1636
Hpy8I	GTNNAC	2 cut(s)	331, 1033
Hpy99I	CGWCG	2 cut(s)	929, 1506
HpyAV	CCTTC	2 cut(s)	969, 1527
HpyCH4III	ACNGT	1 cut(s)	929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1190, 1276
HpyF3I	CTNAG	4 cut(s)	407, 570, 1265, 1623
Hsp92II	CATG	7 cut(s)	305, 309, 326, 451, 1352, 1643, 1681
HspAI	GCGC	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	169, 388, 403, 1011, 1187
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	5 cut(s)	212, 248, 1160, 1636, 1652
Lsp1109I	GCAGC	7 cut(s)	230, 704, 811, 904, 947, 1168, 1519
LweI	GCATC	6 cut(s)	14, 103, 280, 474, 1544, 1611
MaeI	CTAG	4 cut(s)	491, 992, 1185, 1556
MaeIII	GTNAC	4 cut(s)	254, 442, 560, 1384
MalI	GATC	5 cut(s)	171, 390, 405, 1013, 1189
MboI	GATC	5 cut(s)	169, 388, 403, 1011, 1187
MboII	GAAGA	6 cut(s)	41, 44, 414, 493, 511, 1311
MflI	RGATCY	1 cut(s)	1187
MhlI	GDGCHC	2 cut(s)	1035, 1206
MluCI	AATT	6 cut(s)	583, 858, 978, 1255, 1482, 1578
MmeI	TCCRAC	3 cut(s)	948, 980, 1119
MnlI	CCTC	9 cut(s)	55, 79, 229, 498, 817, 904, 967, 1208, 1349
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	4 cut(s)	165, 330, 339, 678
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	2 cut(s)	938, 1532
MspI	CCGG	2 cut(s)	736, 1158
MspR9I	CCNGG	2 cut(s)	182, 1159
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	1190, 1276
NciI	CCSGG	1 cut(s)	1159
NdeII	GATC	5 cut(s)	169, 388, 403, 1011, 1187
NlaIII	CATG	7 cut(s)	305, 309, 326, 451, 1352, 1643, 1681
NlaIV	GGNNCC	4 cut(s)	197, 1156, 1462, 1473
NmeAIII	GCCGAG	1 cut(s)	1185
NmuCI	GTSAC	2 cut(s)	560, 1384
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	3 cut(s)	309, 326, 1643
PciSI	GCTCTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	757, 1073
PinAI	ACCGGT	1 cut(s)	735
PkrI	GCNGC	7 cut(s)	245, 719, 826, 894, 937, 1183, 1534
Psp6I	CCWGG	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	560
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	197, 1156, 1462, 1473
PspPI	GGNCC	2 cut(s)	196, 592
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	1187
PvuII	CAGCTG	1 cut(s)	1532
RsaI	GTAC	1 cut(s)	799
RsaNI	GTAC	1 cut(s)	798
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	165, 330, 339, 678
SatI	GCNGC	7 cut(s)	244, 718, 825, 893, 936, 1182, 1533
Sau3AI	GATC	5 cut(s)	169, 388, 403, 1011, 1187
Sau96I	GGNCC	2 cut(s)	196, 592
ScrFI	CCNGG	2 cut(s)	182, 1159
SduI	GDGCHC	2 cut(s)	1035, 1206
SfaNI	GCATC	6 cut(s)	14, 103, 280, 474, 1544, 1611
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	4 cut(s)	46, 275, 518, 986
SmoI	CTYRAG	4 cut(s)	46, 275, 518, 986
Sse9I	AATT	6 cut(s)	583, 858, 978, 1255, 1482, 1578
SsiI	CCGC	4 cut(s)	220, 246, 784, 938
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	4 cut(s)	491, 992, 1185, 1556
StyD4I	CCNGG	2 cut(s)	180, 1157
TaaI	ACNGT	1 cut(s)	929
TaqI	TCGA	4 cut(s)	172, 1014, 1025, 1560
TasI	AATT	6 cut(s)	583, 858, 978, 1255, 1482, 1578
TfiI	GAWTC	2 cut(s)	757, 1073
Tru1I	TTAA	4 cut(s)	165, 330, 339, 678
Tru9I	TTAA	4 cut(s)	165, 330, 339, 678
TscAI	CASTG	4 cut(s)	276, 474, 823, 970
TseFI	GTSAC	2 cut(s)	560, 1384
TseI	GCWGC	7 cut(s)	243, 717, 824, 892, 935, 1181, 1532
Tsp45I	GTSAC	2 cut(s)	560, 1384
TspDTI	ATGAA	4 cut(s)	120, 414, 770, 1431
TspGWI	ACGGA	2 cut(s)	421, 1490
TspRI	CASTG	4 cut(s)	276, 474, 823, 970
VneI	GTGCAC	1 cut(s)	1031
VpaK11BI	GGWCC	1 cut(s)	592
XagI	CCTNNNNNAGG	2 cut(s)	185, 569
XapI	RAATTY	1 cut(s)	1578
XceI	RCATGY	3 cut(s)	309, 326, 1643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XspI	CTAG	4 cut(s)	491, 992, 1185, 1556
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.