Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006559.1

Orthogroup ID

OG0008272

Physical Location & Seq

Genomic Coordinates Reverse (-)

953 .. 3248

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006559.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atgcaggttggctgtggagctggaaacactatttttccactggttgcgatatatgcagacatttttgtccatgcttgtgatttttcaccaaatgctgttaacttggttaagaaacataaagattttacagagtccagagttaatgcattcgtttgtgatttgaccattgacgatctgagcaagcagatatctccatcttcagtagatattgtaaccatgatttttgtgttatctgcagtatctccggagaagatgtctctggtagtgcagaatattagaaagattctcaagccaaatggtcgtgtgctatttcgcgattatgctactggtgaccttgctcaggaaagattaaattgcaaggaccaaaagattagtgaaaacttttatgccaggggtgatggcactagggctttctacttctctaatgagttcttgacaagcttatttaaagaaaatggttttgatgttgaggaacttgatctgtgctgcaaacaagttgaaaaccggtcgcgggagttggtaatgaataggcggtgggttcaagctgtattctgcctttcagatggtacaaactccaccaccaactcagaagctgcaatcagaatagaccatcctggaatggagatggatgttgacaataacatcttgaagaaacctgtaaacgatttggaggttgacatgtccgacggtgtggcaacagaaatgtttggtcttccaacttcgactgatggtgataatgaggtcattgagctcgagctgggaggttggactttcaaaatcaaagtgctatccaaagagtaccaacacacctgcaaatcaactggtttaatgttatgggaatcagctcggtttatggctcctgttttagcaagaaatccagctattttttctgggaaacgggtgttggagttggggtctggctgtgcaggcatttgctctatgattgctgctggatctgcagaccttgtgttcgccactgatggagacacaaaagcactcgacctactgacagaaaatgtcatgtcaaatcttagaccgccaatttcggacaaatttactacaagaatattagagtggggaaataaagaccatatagaagccatcaagcaagttaacagtggaggatttgatatcatattaggcacggatgtcacttacatacctgaagctattttgcccttgtttcaaactgcaaaggagttgatttcatctaacaacaaggatcaccaagcagccctaatcctgtgtcatatttttcgtcgagtagatgaaccttccatactatcagcagcttctcgatttggtttcaagctagtcgataagtggcctgtagaaattcttattaatccatcacaaagcatcatcaattcttggttccctgaaaacggctcagcggatgtttcaagggggccgttaaatattttgtacttccacaaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_12 Methyltransf_16 Methyltransf_23 Methyltransf_25

Protein Analysis

480

Amino Acids

53.29

Weight (kDa)

5.12

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26200 AT2G26200
fragaria_vesca	FvH4_2g31511 FvH4_2g31511 FvH4_2g31511 FvH4_2g31511 FvH4_2g31511
malus_domestica	MD08G1065700.v1.1 MD15G1055800.v1.1
prunus_persica	Prupe.1G408900_v2.0.a1 Prupe.1G408900_v2.0.a1 Prupe.1G408900_v2.0.a1
pyrus_communis	pycom08g05430
rosa_chinensis	RchiOBHm_Chr6g0311271
rosa_multiflora	Rmu_sc0006559.1_g000001 Rmu_sc0008536.1_g000002 Rmu_sc0013795.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157810
rosa_samantha	Rh6AG501600 Rh6BG512300 Rh6CG518000 Rh6DG504300
rosa_wichuraiana	Rw6G043680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	818
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	818
AccII	CGCG	2 cut(s)	315, 511
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	4 cut(s)	511, 532, 1037, 1394
AclWI	GGATC	2 cut(s)	961, 1230
AcsI	RAATTY	2 cut(s)	1052, 1335
AcuI	CTGAAG	2 cut(s)	183, 1185
AfaI	GTAC	3 cut(s)	568, 800, 1427
AfiI	CCNNNNNNNGG	3 cut(s)	340, 511, 1385
AflIII	ACRYGT	1 cut(s)	678
AgeI	ACCGGT	1 cut(s)	504
AgsI	TTSAA	7 cut(s)	500, 542, 649, 775, 1187, 1309, 1404
AjnI	CCWGG	2 cut(s)	389, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	261, 978
AlwI	GGATC	2 cut(s)	961, 1230
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	2 cut(s)	1325, 1409
ApeKI	GCWGC	5 cut(s)	486, 593, 947, 1232, 1289
ApoI	RAATTY	2 cut(s)	1052, 1335
ArsI	GACNNNNNNTTYG	2 cut(s)	953, 985
AseI	ATTAAT	1 cut(s)	1344
AsiGI	ACCGGT	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	361, 1409
AsuHPI	GGTGA	5 cut(s)	78, 341, 407, 743, 1217
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	5 cut(s)	473, 580, 934, 1244, 1301
BccI	CCATC	9 cut(s)	202, 392, 557, 618, 619, 722, 974, 1109, 1357
BceAI	ACGGC	2 cut(s)	1396, 1402
BciT130I	CCWGG	2 cut(s)	391, 615
BcoDI	GTCTC	2 cut(s)	261, 978
BfaI	CTAG	2 cut(s)	405, 1313
BfmI	CTRYAG	3 cut(s)	234, 957, 1329
BfuAI	ACCTGC	1 cut(s)	818
BisI	GCNGC	5 cut(s)	487, 594, 948, 1233, 1290
BlpI	GCTNAGC	1 cut(s)	1390
BlsI	GCNGC	5 cut(s)	488, 595, 949, 1234, 1291
Bme1390I	CCNGG	2 cut(s)	391, 615
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	2 cut(s)	361, 1409
BmiI	GGNNCC	3 cut(s)	858, 1376, 1410
BmrFI	CCNGG	2 cut(s)	391, 615
BmsI	GCATC	1 cut(s)	1368
BpiI	GAAGAC	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	1390
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	2 cut(s)	244, 504
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 899, 929
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 511, 1385
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	3 cut(s)	45, 331, 826
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	391, 615
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	4 cut(s)	610, 634, 1153, 1402
BseLI	CCNNNNNNNGG	3 cut(s)	340, 511, 1385
BseMII	CTCAG	4 cut(s)	167, 353, 600, 1404
BseNI	ACTGG	3 cut(s)	45, 331, 826
BseXI	GCAGC	5 cut(s)	473, 580, 934, 1244, 1301
BseYI	CCCAGC	1 cut(s)	757
BsgI	GTGCAG	2 cut(s)	287, 945
Bsh1236I	CGCG	2 cut(s)	315, 511
Bsh1285I	CGRYCG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	1327, 1411
BshTI	ACCGGT	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	2 cut(s)	245, 505
BslI	CCNNNNNNNGG	3 cut(s)	340, 511, 1385
BsmAI	GTCTC	2 cut(s)	261, 978
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	1327, 1411
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	172, 478, 953, 1222
Bsp1720I	GCTNAGC	1 cut(s)	1390
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	4 cut(s)	511, 532, 1037, 1394
BspANI	GGCC	2 cut(s)	1327, 1411
BspCNI	CTCAG	4 cut(s)	168, 352, 599, 1403
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	315, 511
BspLI	GGNNCC	3 cut(s)	858, 1376, 1410
BspMAI	CTGCAG	2 cut(s)	238, 961
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	2 cut(s)	961, 1230
BsrFI	RCCGGY	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	45, 331, 826
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	4 cut(s)	172, 478, 953, 1222
Bst2UI	CCWGG	2 cut(s)	391, 615
Bst4CI	ACNGT	2 cut(s)	689, 1118
BstC8I	GCNNGC	2 cut(s)	182, 928
BstDEI	CTNAG	5 cut(s)	176, 339, 586, 1031, 1390
BstEII	GGTNACC	1 cut(s)	329
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	610, 634, 1153, 1402
BstFNI	CGCG	2 cut(s)	315, 511
BstKTI	GATC	4 cut(s)	175, 481, 956, 1225
BstMAI	GTCTC	2 cut(s)	261, 978
BstMBI	GATC	4 cut(s)	172, 478, 953, 1222
BstMCI	CGRYCG	1 cut(s)	509
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 927, 956
BstNI	CCWGG	2 cut(s)	391, 615
BstNSI	RCATGY	1 cut(s)	682
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	389, 613
BstSFI	CTRYAG	3 cut(s)	234, 957, 1329
BstUI	CGCG	2 cut(s)	315, 511
BstV1I	GCAGC	5 cut(s)	473, 580, 934, 1244, 1301
BstV2I	GAAGAC	1 cut(s)	704
BstX2I	RGATCY	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	953
BsuRI	GGCC	2 cut(s)	1327, 1411
BtsCI	GGATG	4 cut(s)	610, 634, 1153, 1402
BtsIMutI	CAGTG	3 cut(s)	38, 975, 1123
BtuMI	TCGCGA	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	2 cut(s)	182, 928
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	361, 1409
Csp6I	GTAC	3 cut(s)	567, 799, 1426
CspAI	ACCGGT	1 cut(s)	504
CviAII	CATG	4 cut(s)	71, 217, 679, 1021
CviQI	GTAC	3 cut(s)	567, 799, 1426
DdeI	CTNAG	5 cut(s)	176, 339, 586, 1031, 1390
DpnI	GATC	4 cut(s)	174, 480, 955, 1224
DpnII	GATC	4 cut(s)	172, 478, 953, 1222
DraI	TTTAAA	1 cut(s)	448
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	753
Eco32I	GATATC	2 cut(s)	189, 1132
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	183, 1185
Eco88I	CYCGRG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	751
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	389, 613
EcoRV	GATATC	2 cut(s)	189, 1132
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	753
FaeI	CATG	4 cut(s)	74, 220, 682, 1024
FatI	CATG	4 cut(s)	70, 216, 678, 1020
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	487, 594, 948, 1233, 1290
FokI	GGATG	4 cut(s)	597, 641, 1160, 1409
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	5 cut(s)	487, 594, 948, 1233, 1290
FspBI	CTAG	2 cut(s)	405, 1313
GluI	GCNGC	5 cut(s)	487, 594, 948, 1233, 1290
GsaI	CCCAGC	1 cut(s)	761
HaeIII	GGCC	2 cut(s)	1327, 1411
HapII	CCGG	2 cut(s)	245, 505
Hin1II	CATG	4 cut(s)	74, 220, 682, 1024
HincII	GTYRAC	4 cut(s)	100, 634, 676, 1114
HindII	GTYRAC	4 cut(s)	100, 634, 676, 1114
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	3 cut(s)	131, 283, 839
HpaI	GTTAAC	2 cut(s)	100, 1114
HpaII	CCGG	2 cut(s)	245, 505
HphI	GGTGA	5 cut(s)	78, 341, 407, 743, 1217
Hpy166II	GTNNAC	5 cut(s)	100, 634, 661, 676, 1114
Hpy188I	TCNGA	6 cut(s)	177, 562, 589, 602, 685, 1048
Hpy188III	TCNNGA	7 cut(s)	135, 245, 314, 341, 433, 646, 1296
Hpy8I	GTNNAC	5 cut(s)	100, 634, 661, 676, 1114
Hpy99I	CGWCG	2 cut(s)	689, 1263
HpyAV	CCTTC	1 cut(s)	1284
HpyCH4III	ACNGT	2 cut(s)	689, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 927, 956
HpyF3I	CTNAG	5 cut(s)	176, 339, 586, 1031, 1390
Hsp92II	CATG	4 cut(s)	74, 220, 682, 1024
Kpn2I	TCCGGA	1 cut(s)	244
KspAI	GTTAAC	2 cut(s)	100, 1114
Kzo9I	GATC	4 cut(s)	172, 478, 953, 1222
LmnI	GCTCC	2 cut(s)	17, 862
Lsp1109I	GCAGC	5 cut(s)	473, 580, 934, 1244, 1301
LweI	GCATC	1 cut(s)	1368
MaeI	CTAG	2 cut(s)	405, 1313
MaeIII	GTNAC	3 cut(s)	211, 329, 1150
MalI	GATC	4 cut(s)	174, 480, 955, 1224
MboI	GATC	4 cut(s)	172, 478, 953, 1222
MboII	GAAGA	4 cut(s)	189, 262, 661, 704
MflI	RGATCY	1 cut(s)	953
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	5 cut(s)	352, 1041, 1052, 1335, 1366
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	4 cut(s)	708, 740, 746, 885
MnlI	CCTC	5 cut(s)	463, 664, 733, 755, 1115
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	9 cut(s)	99, 108, 141, 350, 447, 827, 1113, 1344, 1415
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	1394
MspI	CCGG	2 cut(s)	245, 505
MspR9I	CCNGG	2 cut(s)	391, 615
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	391, 615
MvnI	CGCG	2 cut(s)	315, 511
MwoI	GCNNNNNNNGC	3 cut(s)	53, 927, 956
NdeII	GATC	4 cut(s)	172, 478, 953, 1222
NlaIII	CATG	4 cut(s)	74, 220, 682, 1024
NlaIV	GGNNCC	3 cut(s)	858, 1376, 1410
NmuCI	GTSAC	2 cut(s)	329, 1150
NruI	TCGCGA	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	682
PaeR7I	CTCGAG	1 cut(s)	752
PaqCI	CACCTGC	1 cut(s)	818
PciI	ACATGT	1 cut(s)	678
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	283, 839
PfoI	TCCNGGA	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	504
PkrI	GCNGC	5 cut(s)	488, 595, 949, 1234, 1291
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PscI	ACATGT	1 cut(s)	678
PshBI	ATTAAT	1 cut(s)	1344
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	389, 613
PspEI	GGTNACC	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	757
PspGI	CCWGG	2 cut(s)	389, 613
PspN4I	GGNNCC	3 cut(s)	858, 1376, 1410
PspPI	GGNCC	2 cut(s)	361, 1409
PspXI	VCTCGAGB	1 cut(s)	752
PsrI	GAACNNNNNNTAC	2 cut(s)	1263, 1295
PstI	CTGCAG	2 cut(s)	238, 961
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	953
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	3 cut(s)	568, 800, 1427
RsaNI	GTAC	3 cut(s)	567, 799, 1426
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	9 cut(s)	99, 108, 141, 350, 447, 827, 1113, 1344, 1415
SatI	GCNGC	5 cut(s)	487, 594, 948, 1233, 1290
Sau3AI	GATC	4 cut(s)	172, 478, 953, 1222
Sau96I	GGNCC	2 cut(s)	361, 1409
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	391, 615
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	1368
SfcI	CTRYAG	3 cut(s)	234, 957, 1329
Sfr274I	CTCGAG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	287, 752
SmoI	CTYRAG	2 cut(s)	287, 752
Sse9I	AATT	5 cut(s)	352, 1041, 1052, 1335, 1366
SsiI	CCGC	4 cut(s)	511, 532, 1037, 1394
SspI	AATATT	3 cut(s)	274, 1068, 1420
SspMI	CTAG	2 cut(s)	405, 1313
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	389, 613
TaaI	ACNGT	2 cut(s)	689, 1118
TaqI	TCGA	6 cut(s)	722, 753, 999, 1261, 1297, 1317
TasI	AATT	5 cut(s)	352, 1041, 1052, 1335, 1366
TatI	WGTACW	1 cut(s)	1425
TfiI	GAWTC	2 cut(s)	283, 839
Tru1I	TTAA	9 cut(s)	99, 108, 141, 350, 447, 827, 1113, 1344, 1415
Tru9I	TTAA	9 cut(s)	99, 108, 141, 350, 447, 827, 1113, 1344, 1415
TscAI	CASTG	3 cut(s)	45, 982, 1123
TseFI	GTSAC	2 cut(s)	329, 1150
TseI	GCWGC	5 cut(s)	486, 593, 947, 1232, 1289
Tsp45I	GTSAC	2 cut(s)	329, 1150
TspDTI	ATGAA	3 cut(s)	539, 1197, 1284
TspGWI	ACGGA	1 cut(s)	1160
TspRI	CASTG	3 cut(s)	45, 982, 1123
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	1344
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	1052, 1335
XceI	RCATGY	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	752
XspI	CTAG	2 cut(s)	405, 1313
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.