Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005879

Physical Location & Seq

Genomic Coordinates Reverse (-)

7855147 .. 7857854

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1111800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTCAGTGAGCTCACCAAAAGAAGGCTTTGTTGGTGGTCCTTAATGATGGATCCTGCTTATCGACCAAGCTTAATGCAAAAAGACAGTGGTGTTTCTGGTGTTCTTCCATTTGCTGGGTCAGACTTGGTTTTGAGTCCTTCCCAATGGAGCGGTCATGTTGTTGGAAAGGTTAGCTCATGGATTGACTTGGATTCAGAAGATGAGATCCTCCGGTGCGATTCAGAAACTACTTTGAAGCAAGAGATAGGATGGGCTTCTCATTTGTCCCTGCAGGCATGCCTTCTTCCAGCTCCAAAGGGGAAATCCTGTGCTAATTATGCTCGATGTGCAAATCAGCTTTTACAGGGCATAAGCAGTACACAGTTGTGGTTGCGGCTTCCATGGGTGAATGAGGATGATTCTTGGGAGATTTGGAATTCATTTCATCTGATATGTGAACATCATAGTCAGTTATCAGTTGCTCTTGATGTTTTAAGTTCACGACCTTTTGTAAACTCTCTTGGACGCTGGTTTGGGGAATCTGTTAGAGCAGCCATATTGAGTACTGATGTAATTAATATGCTGCTGTGTAATAGGGGTTCTTTGCAATCTTACAGGGATTACTTGCAGTCAGCCATATTGCCTCTCATGGATAATCTAGAAGCTCAAACCTATGAGACATTTGAGGACACAATGAAATATATTCAGGCGCTTCTCTTACGTTCCCAATTTTTTTCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009909 GO:0009987 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043985 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko04011 ko04111 map03013 map04011 map04111

Pfam Domains

Protein Families

PRMT5 PRMT5_C PRMT5_TIM

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

5.33

Isoelectric Point (pI)

64.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT5_TIM	PF17285	21 - 186	2.3e-49	PRMT5 TIM barrel domain
PRMT5	PF05185	197 - 230	1.9e-06	PRMT5 arginine-N-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31120 AT4G31120
fragaria_vesca	FvH4_2g30610 FvH4_2g30610 FvH4_2g30610 FvH4_2g30610 FvH4_2g30610
malus_domestica	MD08G1132700.v1.1 MD15G1111800.v1.1 MD15G1112100.v1.1 MD15G1112600.v1.1 MD15G1112700.v1.1
prunus_persica	Prupe.1G463300_v2.0.a1 Prupe.1G463300_v2.0.a1
pyrus_communis	pycom08g11190 pycom15g10130
rosa_chinensis	RchiOBHm_Chr6g0312391
rosa_laevigata	RLG00000010331
rosa_multiflora	Rmu_sc0028838.1_g000001 Rmu_sc0031621.1_g000001 Rmu_ssc0000424.1_g000022
rosa_roxburghii	Rroxscaffold_7G00156840
rosa_rugosa	Rorug06G0395500
rosa_samantha	Rh6AG512700 Rh6BG523600 Rh6CG529000 Rh6DG514900
rosa_wichuraiana	Rw6G044560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	2 cut(s)	153, 376
AclWI	GGATC	3 cut(s)	47, 60, 202
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	2 cut(s)	361, 547
AfiI	CCNNNNNNNGG	2 cut(s)	24, 116
AgsI	TTSAA	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AleI	CACNNNNGTG	1 cut(s)	367
AluBI	AGCT	6 cut(s)	13, 72, 177, 293, 340, 647
AluI	AGCT	6 cut(s)	13, 72, 177, 293, 340, 647
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	47, 60, 202
ApeKI	GCWGC	2 cut(s)	533, 565
ApoI	RAATTY	1 cut(s)	418
AseI	ATTAAT	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	7, 400
AvaII	GGWCC	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	545, 552
BccI	CCATC	2 cut(s)	43, 246
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	2 cut(s)	641, 724
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	695
BisI	GCNGC	3 cut(s)	377, 534, 566
BlsI	GCNGC	3 cut(s)	378, 535, 567
BmcAI	AGTACT	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 116
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	257, 403
BseLI	CCNNNNNNNGG	2 cut(s)	24, 116
BseXI	GCAGC	2 cut(s)	545, 552
BseYI	CCCAGC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	24, 116
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	52, 207
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	2 cut(s)	153, 376
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	3 cut(s)	47, 60, 202
BsrBI	CCGCTC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	2 cut(s)	52, 207
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	89, 366
BstC8I	GCNNGC	2 cut(s)	276, 280
BstDSI	CCRYGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	257, 403
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	2 cut(s)	55, 210
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	52, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 329
BstNSI	RCATGY	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	545, 552
BstX2I	RGATCY	2 cut(s)	52, 207
BstYI	RGATCY	2 cut(s)	52, 207
BtgI	CCRYGG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	257, 403
BtsIMutI	CAGTG	2 cut(s)	13, 94
Cac8I	GCNNGC	2 cut(s)	276, 280
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	360, 546
CviAII	CATG	5 cut(s)	158, 180, 279, 384, 631
CviQI	GTAC	2 cut(s)	360, 546
DpnI	GATC	2 cut(s)	54, 209
DpnII	GATC	2 cut(s)	52, 207
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	5 cut(s)	161, 183, 282, 387, 634
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	5 cut(s)	157, 179, 278, 383, 630
Fnu4HI	GCNGC	3 cut(s)	377, 534, 566
FokI	GGATG	2 cut(s)	264, 410
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	377, 534, 566
FspBI	CTAG	2 cut(s)	641, 724
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	3 cut(s)	377, 534, 566
GsaI	CCCAGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	695
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	5 cut(s)	161, 183, 282, 387, 634
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	5 cut(s)	136, 194, 221, 401, 521
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	2 cut(s)	7, 400
Hpy166II	GTNNAC	4 cut(s)	362, 440, 482, 496
Hpy188I	TCNGA	4 cut(s)	124, 199, 226, 432
Hpy188III	TCNNGA	3 cut(s)	467, 483, 641
Hpy8I	GTNNAC	4 cut(s)	362, 440, 482, 496
HpyAV	CCTTC	3 cut(s)	18, 150, 293
HpyCH4III	ACNGT	2 cut(s)	89, 366
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	5 cut(s)	79, 274, 332, 589, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 329
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	5 cut(s)	161, 183, 282, 387, 634
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	2 cut(s)	52, 207
LmnI	GCTCC	2 cut(s)	150, 298
Lsp1109I	GCAGC	2 cut(s)	545, 552
MaeI	CTAG	2 cut(s)	641, 724
MaeII	ACGT	1 cut(s)	703
MalI	GATC	2 cut(s)	54, 209
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	52, 207
MboII	GAAGA	3 cut(s)	98, 212, 278
MflI	RGATCY	2 cut(s)	52, 207
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	316, 418, 555, 710
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	221, 388, 636, 661
MseI	TTAA	4 cut(s)	44, 74, 476, 558
MslI	CAYNNNNRTG	1 cut(s)	367
MspI	CCGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	320, 329
NcoI	CCATGG	1 cut(s)	383
NdeII	GATC	2 cut(s)	52, 207
NlaIII	CATG	5 cut(s)	161, 183, 282, 387, 634
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	194, 221, 401, 521
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	378, 535, 567
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	565, 597
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	52, 207
RsaI	GTAC	2 cut(s)	361, 547
RsaNI	GTAC	2 cut(s)	360, 546
RseI	CAYNNNNRTG	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	4 cut(s)	44, 74, 476, 558
SatI	GCNGC	3 cut(s)	377, 534, 566
Sau3AI	GATC	2 cut(s)	52, 207
Sau96I	GGNCC	1 cut(s)	39
SbfI	CCTGCAGG	1 cut(s)	276
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	145
SdaI	CCTGCAGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	367
SphI	GCATGC	1 cut(s)	282
Sse8387I	CCTGCAGG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	316, 418, 555, 710
SsiI	CCGC	2 cut(s)	153, 376
SspMI	CTAG	2 cut(s)	641, 724
SstI	GAGCTC	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	89, 366
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	2 cut(s)	64, 325
TasI	AATT	4 cut(s)	316, 418, 555, 710
TatI	WGTACW	2 cut(s)	359, 545
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	4 cut(s)	194, 221, 401, 521
Tru1I	TTAA	4 cut(s)	44, 74, 476, 558
Tru9I	TTAA	4 cut(s)	44, 74, 476, 558
TscAI	CASTG	2 cut(s)	13, 94
TseI	GCWGC	2 cut(s)	533, 565
TspDTI	ATGAA	3 cut(s)	411, 416, 692
TspRI	CASTG	2 cut(s)	13, 94
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	39
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	1 cut(s)	418
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	1 cut(s)	282
XspI	CTAG	2 cut(s)	641, 724
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.