Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028838.1

Orthogroup ID

OG0005879

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1048

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028838.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 212 bp

ctggctcctcctcaacctgtgttcacgttcactcatccaaaccgatcaattgacaaaagcaatagccgctacacgaagttaaagtttgaaatacctggtgatactgggtctgctatggttcatggatttgctggctactttgattccatactgtacaaagaagttcatcttggcattgagccatcaacatcaacaccaaacatgtttagctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009909 GO:0009987 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043985 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko04011 ko04111 map03013 map04011 map04111

Pfam Domains

Protein Families

PRMT5 PRMT5_C PRMT5_TIM

Protein Analysis

70

Amino Acids

7.78

Weight (kDa)

7.03

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31120 AT4G31120
fragaria_vesca	FvH4_2g30610 FvH4_2g30610 FvH4_2g30610 FvH4_2g30610 FvH4_2g30610
malus_domestica	MD08G1132700.v1.1 MD15G1111800.v1.1 MD15G1112100.v1.1 MD15G1112600.v1.1 MD15G1112700.v1.1
prunus_persica	Prupe.1G463300_v2.0.a1 Prupe.1G463300_v2.0.a1
pyrus_communis	pycom08g11190 pycom15g10130
rosa_chinensis	RchiOBHm_Chr6g0312391
rosa_laevigata	RLG00000010331
rosa_multiflora	Rmu_sc0028838.1_g000001 Rmu_sc0031621.1_g000001 Rmu_ssc0000424.1_g000022
rosa_roxburghii	Rroxscaffold_7G00156840
rosa_rugosa	Rorug06G0395500
rosa_samantha	Rh6AG512700 Rh6BG523600 Rh6CG529000 Rh6DG514900
rosa_wichuraiana	Rw6G044560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	110
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	96
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	122, 202
CviJI	RGCY	5 cut(s)	5, 66, 135, 181, 210
CviKI_1	RGCY	5 cut(s)	5, 66, 135, 181, 210
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	125, 205
FaiI	YATR	4 cut(s)	116, 123, 149, 203
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	2 cut(s)	121, 201
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	125, 205
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	24, 30
Hpy8I	GTNNAC	2 cut(s)	24, 30
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	125, 205
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	30, 81, 90, 108, 117
MabI	ACCWGGT	1 cut(s)	94
MaeII	ACGT	1 cut(s)	26
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MfeI	CAATTG	1 cut(s)	48
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	2 cut(s)	18, 21
MseI	TTAA	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	125, 205
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	205
PciI	ACATGT	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	4 cut(s)	19, 29, 97, 212
SexAI	ACCWGGT	1 cut(s)	94
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	29
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	110, 155
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.