Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005879

Physical Location & Seq

Genomic Coordinates Reverse (-)

7923895 .. 7927030

Gene Structure 3136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1112700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCACTCGGGCAAAGAGCCGGCGACAAGAGCGAGTCTCGGTTCTGCGGCGTGGAGACCGAGTTCAACGATGACATGCCCCACGTCCTCGCTTTCAATCTCTCCCATGGCTCCTTCGACTTCGTCCTCGCTCCTTTGATGGATCCTGCTTACCGACCAAGCTTAATGCAAAAAGACAGTGGTGTTTCTGGTGTTCTTCCATTTGCTGGGTCAGACTTGGTTTTGAGTCCTTCCCAATGGAGTGGTCATGTCGTTGGAAAGGTTAGCTCATGGATTGACTTAGATTCAGAAGATGAGATCCTCCGGTGCGATTCAGAAACTACTTTGAAGCAAGATATAGCATGGGCTTCTCATTTGTCCCTGCAGGCATGCCTTCTTCCAGCTCCAAAGGGGAAATCCTGTGCTAATTATGCTCGATGTGTAAATCAGCTTTTACAGGGCCTAAGCAGTACGCAGTTGTGGTTGCGGCTTCCATTGGTCAAGTCAGACAGTGAAACCATGGATGTAAACACTGATACCTCGGATGATTCTTGGGAGATTTGGAATTCATTTTGCATGCTATGTGAACATCACAGTCAGTTATCAGTTGCTCTTGATGTTTTGAGTTCACTACCTTCTGTAAACTCTCTTGGACGCTGGTTTGGGGAATCTGTTAGAGCAGCCATATTCAGTACTGATTGCTTTCTAACAAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009909 GO:0009987 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019918 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043985 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko04011 ko04111 map03013 map04011 map04111

Pfam Domains

Protein Families

PRMT5 PRMT5_C PRMT5_TIM

Protein Analysis

233

Amino Acids

25.45

Weight (kDa)

4.61

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT5_TIM	PF17285	39 - 232	8.9e-63	PRMT5 TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31120 AT4G31120
fragaria_vesca	FvH4_2g30610 FvH4_2g30610 FvH4_2g30610 FvH4_2g30610 FvH4_2g30610
malus_domestica	MD08G1132700.v1.1 MD15G1111800.v1.1 MD15G1112100.v1.1 MD15G1112600.v1.1 MD15G1112700.v1.1
prunus_persica	Prupe.1G463300_v2.0.a1 Prupe.1G463300_v2.0.a1
pyrus_communis	pycom08g11190 pycom15g10130
rosa_chinensis	RchiOBHm_Chr6g0312391
rosa_laevigata	RLG00000010331
rosa_multiflora	Rmu_sc0028838.1_g000001 Rmu_sc0031621.1_g000001 Rmu_ssc0000424.1_g000022
rosa_roxburghii	Rroxscaffold_7G00156840
rosa_rugosa	Rorug06G0395500
rosa_samantha	Rh6AG512700 Rh6BG523600 Rh6CG529000 Rh6DG514900
rosa_wichuraiana	Rw6G044560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	2 cut(s)	48, 466
AclWI	GGATC	3 cut(s)	137, 150, 292
AcsI	RAATTY	1 cut(s)	544
AfaI	GTAC	2 cut(s)	451, 673
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	67, 97, 328
AjiI	CACGTC	1 cut(s)	85
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	162, 267, 383, 430
AluI	AGCT	4 cut(s)	162, 267, 383, 430
Alw26I	GTCTC	2 cut(s)	42, 50
AlwI	GGATC	3 cut(s)	137, 150, 292
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	42, 50
BfmI	CTRYAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	49, 467, 660
BlsI	GCNGC	3 cut(s)	50, 468, 661
BmcAI	AGTACT	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	112, 144
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
Bpu10I	CCTNAGC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	106, 498, 519
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	106, 498, 519
BseGI	GGATG	2 cut(s)	508, 529
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	671
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	21, 304
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	42, 50
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	142, 297
Bsp19I	CCATGG	2 cut(s)	106, 498
BspACI	CCGC	2 cut(s)	48, 466
BspANI	GGCC	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	112, 144
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	3 cut(s)	137, 150, 292
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	106, 498, 519
BssMI	GATC	2 cut(s)	142, 297
BssT1I	CCWWGG	2 cut(s)	106, 498
Bst4CI	ACNGT	3 cut(s)	179, 491, 575
BstC8I	GCNNGC	4 cut(s)	22, 366, 370, 557
BstDEI	CTNAG	2 cut(s)	280, 443
BstDSI	CCRYGG	2 cut(s)	106, 498
BstF5I	GGATG	2 cut(s)	508, 529
BstKTI	GATC	2 cut(s)	145, 300
BstMAI	GTCTC	2 cut(s)	42, 50
BstMBI	GATC	2 cut(s)	142, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 30, 410
BstNSI	RCATGY	3 cut(s)	79, 372, 559
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	671
BstX2I	RGATCY	2 cut(s)	142, 297
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	2 cut(s)	142, 297
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	2 cut(s)	106, 498
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	508, 529
BtsIMutI	CAGTG	3 cut(s)	184, 496, 510
Cac8I	GCNNGC	4 cut(s)	22, 366, 370, 557
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	439
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	450, 672
CviAII	CATG	8 cut(s)	76, 107, 248, 270, 342, 369, 499, 556
CviQI	GTAC	2 cut(s)	450, 672
DdeI	CTNAG	2 cut(s)	280, 443
DpnI	GATC	2 cut(s)	144, 299
DpnII	GATC	2 cut(s)	142, 297
Eco130I	CCWWGG	2 cut(s)	106, 498
Eco31I	GGTCTC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	106, 498
ErhI	CCWWGG	2 cut(s)	106, 498
FaeI	CATG	8 cut(s)	79, 110, 251, 273, 345, 372, 502, 559
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	8 cut(s)	75, 106, 247, 269, 341, 368, 498, 555
Fnu4HI	GCNGC	3 cut(s)	49, 467, 660
FokI	GGATG	2 cut(s)	515, 536
Fsp4HI	GCNGC	3 cut(s)	49, 467, 660
GluI	GCNGC	3 cut(s)	49, 467, 660
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	21, 304
HgaI	GACGC	1 cut(s)	642
Hin1II	CATG	8 cut(s)	79, 110, 251, 273, 345, 372, 502, 559
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	6 cut(s)	35, 226, 284, 311, 527, 647
HpaII	CCGG	2 cut(s)	21, 304
Hpy166II	GTNNAC	4 cut(s)	508, 566, 608, 622
Hpy188I	TCNGA	5 cut(s)	214, 289, 316, 487, 523
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	4 cut(s)	508, 566, 608, 622
HpyAV	CCTTC	4 cut(s)	124, 240, 383, 624
HpyCH4III	ACNGT	3 cut(s)	179, 491, 575
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	169, 364, 555
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 30, 410
HpyF3I	CTNAG	2 cut(s)	280, 443
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	8 cut(s)	79, 110, 251, 273, 345, 372, 502, 559
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	142, 297
LmnI	GCTCC	3 cut(s)	116, 136, 388
Lsp1109I	GCAGC	1 cut(s)	671
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	144, 299
MboI	GATC	2 cut(s)	142, 297
MboII	GAAGA	3 cut(s)	188, 302, 368
MflI	RGATCY	2 cut(s)	142, 297
MluCI	AATT	2 cut(s)	406, 544
MlyI	GAGTC	2 cut(s)	44, 235
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	98, 137, 311, 529
MroNI	GCCGGC	1 cut(s)	20
MseI	TTAA	1 cut(s)	164
MspI	CCGG	2 cut(s)	21, 304
MwoI	GCNNNNNNNGC	3 cut(s)	10, 30, 410
NaeI	GCCGGC	1 cut(s)	22
NcoI	CCATGG	2 cut(s)	106, 498
NdeII	GATC	2 cut(s)	142, 297
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	8 cut(s)	79, 110, 251, 273, 345, 372, 502, 559
NlaIV	GGNNCC	2 cut(s)	112, 144
NspI	RCATGY	3 cut(s)	79, 372, 559
PaeI	GCATGC	2 cut(s)	372, 559
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	4 cut(s)	284, 311, 527, 647
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	50, 468, 661
PleI	GAGTC	2 cut(s)	43, 234
PpsI	GAGTC	2 cut(s)	43, 234
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	112, 144
PspPI	GGNCC	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	2 cut(s)	142, 297
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	451, 673
RsaNI	GTAC	2 cut(s)	450, 672
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	49, 467, 660
Sau3AI	GATC	2 cut(s)	142, 297
Sau96I	GGNCC	1 cut(s)	439
SbfI	CCTGCAGG	1 cut(s)	366
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	2 cut(s)	44, 235
SdaI	CCTGCAGG	1 cut(s)	366
SetI	ASST	8 cut(s)	87, 164, 264, 269, 385, 432, 521, 616
SfcI	CTRYAG	1 cut(s)	362
SphI	GCATGC	2 cut(s)	372, 559
Sse8387I	CCTGCAGG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	406, 544
SsiI	CCGC	2 cut(s)	48, 466
StyI	CCWWGG	2 cut(s)	106, 498
TaaI	ACNGT	3 cut(s)	179, 491, 575
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	117, 415
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	406, 544
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	2 cut(s)	51, 469
TfiI	GAWTC	4 cut(s)	284, 311, 527, 647
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	3 cut(s)	184, 496, 517
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	3 cut(s)	184, 496, 517
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	3 cut(s)	79, 372, 559
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.