MD15G1140800.v1.1

Histone deacetylation protein Rxt3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0005647
Physical Location & Seq
Forward (+)
10387177 .. 10398105
10929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1140800.v1.1.491

Sequence Viewer

Length: 2541 bp
ATGAGTGGTCCGCCTAAACGACCTCACGAAGAGAGTGGTCATTCCTCCTCTTCCAAATACCCGCATCCTCACCCGCACCCACAACCACATGACGATTCCGGACCATACCCCAAGCTCTCATCCTCTGTTTCCAATGAATACCATCCTCCCTATGACATTGGCCCCGATGCTCGCTTGCCCAAGATTCCCCGCACCGATTCTCGCGACCCTGATAGGCGATCTCCCCTCCACTCAATCTATCGAATGCCCTCGAATTCAAGTGATATGCACATAGATCATCCTTCAGCTCCCGACAATAGATTGGAGTCCAGGGACACTAGAGATGTTCGCTTTGAGAACCGAGACACAAAGACAGAGGCAAGAGAGTTGTACAACGACGCAAGAAGGGATGCTCAGAGTTCCAAGGGTGAAAAAGAGGTAAGGTATGACAGCAGAGGAGATGACAACAAGGAGGTCAAATATGATAGGCCGAATTTTAACGATCTAAAGGCTGACCCCAAAATGGAAGGTTATGCTCTGGCCGCTAGTCACTTGAACTGGAAAGAATCAAAAGATTACCATAGAGGAAAACGGCATTCTGATGCCCCACCCGCAACTACAGACACCTGGCATCGCGGCAGTTCACAAGGCCACGTTGAAGTTGGAAAGGAACTTCCCACTACGGAGGAGCGGGATCATGTTGAGGCGCATGAGGCTGTTGGGGAAAACAAGTTTGATTCTAAAGGTGATGATAAATTCAAAGAAAAGGATAGAAAAAGGAAAGATGCAAAGCATCGGGATTGGGGCGAAAAGGATAAGGAAAGAAGTGATCGTAGGAGTAGTATTCAAGTAGCTATCAGCAGCAGTGAGGGCAAAGAACCAGCAAAGGAAGAAAGAGATGCAGAGAGGTCGGAGAGGGAGAGGAGGGACATTGGAAAAGACAAAGAAAGAGTAAGAGAGCGGGAAAGGGATCATACCAAGAGAGACCCATGGAATGGAGTAGAGAAAGATGGTTCGAATAATGAGAAGGAAGTTGGTGATGGATCTATTAGAATGTCAGAGCAGGATAATCTTCCACCAGAGCAAAAGAAACAGAAAGATTTTGACAGTTGGAGAACTGTTGATAGGGAATCTAGAGACAGGAGGAAAGAAAGAGATGTTGATGTTGAAGGAGATAGAGCTGAAAAGCACCGTAGGGGATATGACAAAGAATCAGATGATGGATGTGCAGATGGTGAAGGGGCCACAGACAGAGAAAGGGAAGTCTATAATCATGGAGTTCAGCGTAAAAGGATGCAACGGTCAAGGGGTAGCCCTCTAGTGGCAAACCATGATCTGCGTTTTAGGTCTCGCATTCAAGACAATGAAGGGTGGGTTTTAATATTTTCCTTTTCGGTTTCTGACTTTATTGCAAGCATGATGGCTTACCAATTTCACATTATTAAACGTAAAAGTGAAGTATCACCTGTTGTTTATAAAGTTGGCGAATGCATGCAAGAACTGATAAAAGTTTGGAAGGAATATGAGCCATCTCCAGGTGAAGTGAACCAAATGTGTGTGAAAGTCTCTTATGAATGCCACGTCCAACCCTTGGAGGAGATCCGGATCCAGCTGAACAATCGGTGCCTTACCCTAACCAGAACAGCTAACTCGTTCCGCAAAAATCGCCAAGTTAGAGGTGGCCAGCTATGGGGGACAGATATATACACAGATGATTCTGATCTCGTTGCTGTTCTCATGCACACAGGATATTGCCGGCCCACAGCATCTCCTCCGCCTCCTGCTATCCAGGAGTTGCGTGCTACAGTTCGAGTACTACCTCCACAAGACTGTTACATTTCCTCACTGAGAAACAATGTTCGATCACGTGCGTGGGGAGCTGCAATTGGTTGTAGTTTCCGTGTTGAGCGCTGTTGCATCGTCAAGAAAGCGGGTGGAACCATTGATCTTGAAGCTTGTCTTACACATACTTCTACGGTGGAGCCTACCCTTGCTCCAGTGATTGTGGAGCGCTCAATGACTACCAGGGCTGCAGCTTCGAATGCATTGCGACAACAGAGATTTGTACGAGAAGTTACAATACAGTACAACCTCTGCAATGAGCCTTGGATTAAGTATAGTATAAGCATTGTTGCTGACAAGGGTTTGAAGAAAACCCTGTATACTTCTGCACGTCTGAAGAAGGGAGAAGTTCTTTACTTAGAAACACATTCACGCAGGTATGAGCTCTGTTTTACTGGAGAGAAAATGATCAAAGCTGCGCAGCTGTCTCAGATGCATGAAGGCGAGACAGAGAAGAGTCAAAAGCATGTCTCACATTCCACCAATGGTGAAAGAAATGATTCTGATAATGTCATGGTTGATGTCTTCCGTTGGTCTCTATGTAAAACGCCTCTTCCCCAGAAGGTCCTGCGGTCAGTTGGGATCCCGCTTCCCCTTGATTATGTGGAGGTGTTGGAGGAGAATCTTGACTGGGAGGACGTGCAGTGGTCGCAGACGGGTGTTTGGATTGCCGGCAAAGAGTACACACTTGCTCGGGTGCATTTTCTGTCGACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rxt3

Protein Analysis

847

Amino Acids

97.41

Weight (kDa)

7.63

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rxt3 PF08642 544 - 579 2.2e-10 Histone deacetylation protein Rxt3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1455
Acc16I TGCGCA 1 cut(s) 2241
Acc36I ACCTGC 1 cut(s) 2187
AccB1I GGYRCC 1 cut(s) 1602
AccB7I CCANNNNNTGG 2 cut(s) 974, 1570
AccBSI CCGCTC 2 cut(s) 670, 940
AccI GTMKAC 2 cut(s) 2141, 2531
AccII CGCG 2 cut(s) 204, 615
AccIII TCCGGA 2 cut(s) 98, 1581
AclWI GGATC 8 cut(s) 681, 957, 1030, 1573, 1579, 1592, 2398, 2411
AcoI YGGCCR 2 cut(s) 519, 1660
AcsI RAATTY 3 cut(s) 253, 472, 734
AcuI CTGAAG 2 cut(s) 267, 2177
AcvI CACGTG 1 cut(s) 1847
AfaI GTAC 5 cut(s) 371, 1794, 2046, 2066, 2504
AfeI AGCGCT 2 cut(s) 1889, 1991
AfiI CCNNNNNNNGG 6 cut(s) 502, 974, 1300, 1514, 1570, 1669
AgsI TTSAA 9 cut(s) 258, 535, 638, 739, 827, 1148, 1337, 1931, 2128
AjiI CACGTC 3 cut(s) 1561, 2153, 2461
AjnI CCWGG 5 cut(s) 308, 605, 1513, 1767, 2003
AleI CACNNNNGTG 1 cut(s) 1849
Alw21I GWGCWC 1 cut(s) 2208
Alw26I GTCTC 9 cut(s) 336, 957, 1110, 1332, 1549, 2253, 2261, 2296, 2361
AlwI GGATC 8 cut(s) 681, 957, 1030, 1573, 1579, 1592, 2398, 2411
Ama87I CYCGRG 1 cut(s) 2514
Aor13HI TCCGGA 2 cut(s) 98, 1581
Aor51HI AGCGCT 2 cut(s) 1889, 1991
AoxI GGCC 7 cut(s) 160, 467, 519, 628, 1221, 1660, 1736
ApeKI GCWGC 6 cut(s) 840, 1859, 2009, 2012, 2237, 2242
ApoI RAATTY 3 cut(s) 253, 472, 734
Asp700I GAANNNNTTC 1 cut(s) 2320
AspLEI GCGC 4 cut(s) 688, 1890, 1992, 2242
AspS9I GGNCC 6 cut(s) 8, 101, 161, 1221, 1737, 2386
AsuHPI GGTGA 8 cut(s) 62, 419, 737, 1028, 1226, 1434, 1529, 2321
AsuII TTCGAA 2 cut(s) 995, 2018
AvaI CYCGRG 1 cut(s) 2514
AvaII GGWCC 3 cut(s) 8, 101, 2386
BalI TGGCCA 1 cut(s) 1662
BamHI GGATCC 2 cut(s) 1584, 2403
BanI GGYRCC 1 cut(s) 1602
BanII GRGCYC 1 cut(s) 2208
BarI GAAGNNNNNNTAC 2 cut(s) 2043, 2075
BbrPI CACGTG 1 cut(s) 1847
BbsI GAAGAC 1 cut(s) 2338
Bbv12I GWGCWC 1 cut(s) 2208
BbvI GCAGC 6 cut(s) 852, 1846, 1996, 2024, 2224, 2254
BccI CCATC 7 cut(s) 150, 983, 1013, 1193, 1205, 1393, 1516
BceAI ACGGC 1 cut(s) 587
BcgI CGANNNNNNTGC 4 cut(s) 870, 904, 2008, 2042
BciT130I CCWGG 5 cut(s) 310, 607, 1515, 1769, 2005
BclI TGATCA 1 cut(s) 2229
BcoDI GTCTC 9 cut(s) 336, 957, 1110, 1332, 1549, 2253, 2261, 2296, 2361
BfaI CTAG 4 cut(s) 318, 525, 1113, 1298
BfmI CTRYAG 3 cut(s) 597, 1782, 2010
BfoI RGCGCY 2 cut(s) 1891, 1993
BfuAI ACCTGC 1 cut(s) 2187
BisI GCNGC 8 cut(s) 522, 616, 841, 1860, 2010, 2013, 2238, 2243
BlsI GCNGC 8 cut(s) 523, 617, 842, 1861, 2011, 2014, 2239, 2244
BmcAI AGTACT 1 cut(s) 1794
Bme1390I CCNGG 5 cut(s) 310, 607, 1515, 1769, 2005
Bme18I GGWCC 3 cut(s) 8, 101, 2386
BmeT110I CYCGRG 1 cut(s) 2514
BmgBI CACGTC 3 cut(s) 1561, 2153, 2461
BmgT120I GGNCC 6 cut(s) 8, 101, 161, 1221, 1737, 2386
BmiI GGNNCC 7 cut(s) 163, 1222, 1586, 1604, 1918, 1962, 2405
BmrFI CCNGG 5 cut(s) 310, 607, 1515, 1769, 2005
BmrI ACTGGG 1 cut(s) 2461
BmuI ACTGGG 1 cut(s) 2461
BpiI GAAGAC 1 cut(s) 2338
BpmI CTGGAG 3 cut(s) 1497, 1959, 2238
Bpu14I TTCGAA 2 cut(s) 995, 2018
BsaAI YACGTR 1 cut(s) 1847
BsaBI GATNNNNATC 2 cut(s) 1583, 1698
BsaI GGTCTC 3 cut(s) 957, 1332, 2361
BsaJI CCNNGG 6 cut(s) 309, 402, 968, 1569, 2004, 2084
BsaWI WCCGGW 2 cut(s) 98, 1581
BsaXI ACNNNNNCTCC 4 cut(s) 1732, 1762, 1957, 1987
Bsc4I CCNNNNNNNGG 6 cut(s) 502, 974, 1300, 1514, 1570, 1669
Bse118I RCCGGY 2 cut(s) 1734, 2492
Bse1I ACTGG 4 cut(s) 542, 1976, 2221, 2456
Bse3DI GCAATG 2 cut(s) 2024, 2083
Bse8I GATNNNNATC 2 cut(s) 1583, 1698
BseAI TCCGGA 2 cut(s) 98, 1581
BseBI CCWGG 5 cut(s) 310, 607, 1515, 1769, 2005
BseDI CCNNGG 6 cut(s) 309, 402, 968, 1569, 2004, 2084
BseGI GGATG 7 cut(s) 64, 119, 142, 277, 394, 1208, 1278
BseJI GATNNNNATC 2 cut(s) 1583, 1698
BseLI CCNNNNNNNGG 6 cut(s) 502, 974, 1300, 1514, 1570, 1669
BseMI GCAATG 2 cut(s) 2024, 2083
BseMII CTCAG 3 cut(s) 407, 1817, 2264
BseNI ACTGG 4 cut(s) 542, 1976, 2221, 2456
BseRI GAGGAG 7 cut(s) 37, 450, 680, 916, 1589, 1740, 2453
BseXI GCAGC 6 cut(s) 852, 1846, 1996, 2024, 2224, 2254
BsgI GTGCAG 3 cut(s) 1227, 2133, 2483
Bsh1236I CGCG 2 cut(s) 204, 615
BshFI GGCC 7 cut(s) 162, 469, 521, 630, 1223, 1662, 1738
BshNI GGYRCC 1 cut(s) 1602
BsiHKAI GWGCWC 1 cut(s) 2208
BsiHKCI CYCGRG 1 cut(s) 2514
BsiSI CCGG 4 cut(s) 99, 1582, 1735, 2493
BslFI GGGAC 3 cut(s) 326, 920, 1687
BslI CCNNNNNNNGG 6 cut(s) 502, 974, 1300, 1514, 1570, 1669
BsmAI GTCTC 9 cut(s) 336, 957, 1110, 1332, 1549, 2253, 2261, 2296, 2361
BsmFI GGGAC 3 cut(s) 326, 920, 1687
BsmI GAATGC 6 cut(s) 249, 574, 1332, 1472, 1559, 2026
BsnI GGCC 7 cut(s) 162, 469, 521, 630, 1223, 1662, 1738
Bso31I GGTCTC 3 cut(s) 957, 1332, 2361
BsoBI CYCGRG 1 cut(s) 2514
Bsp119I TTCGAA 2 cut(s) 995, 2018
Bsp1286I GDGCHC 1 cut(s) 2208
Bsp13I TCCGGA 2 cut(s) 98, 1581
Bsp1407I TGTACA 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 968
Bsp68I TCGCGA 1 cut(s) 204
BspANI GGCC 7 cut(s) 162, 469, 521, 630, 1223, 1662, 1738
BspCNI CTCAG 3 cut(s) 406, 1818, 2263
BspEI TCCGGA 2 cut(s) 98, 1581
BspFNI CGCG 2 cut(s) 204, 615
BspLI GGNNCC 7 cut(s) 163, 1222, 1586, 1604, 1918, 1962, 2405
BspMAI CTGCAG 1 cut(s) 2014
BspMI ACCTGC 1 cut(s) 2187
BspPI GGATC 8 cut(s) 681, 957, 1030, 1573, 1579, 1592, 2398, 2411
BspT104I TTCGAA 2 cut(s) 995, 2018
BspT107I GGYRCC 1 cut(s) 1602
BspTNI GGTCTC 3 cut(s) 957, 1332, 2361
BsrBI CCGCTC 2 cut(s) 670, 940
BsrDI GCAATG 2 cut(s) 2024, 2083
BsrFI RCCGGY 2 cut(s) 1734, 2492
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 4 cut(s) 542, 1976, 2221, 2456
BssAI RCCGGY 2 cut(s) 1734, 2492
BssECI CCNNGG 6 cut(s) 309, 402, 968, 1569, 2004, 2084
BssNAI GTATAC 1 cut(s) 2142
BssT1I CCWWGG 4 cut(s) 402, 968, 1569, 2084
Bst1107I GTATAC 1 cut(s) 2142
Bst2UI CCWGG 5 cut(s) 310, 607, 1515, 1769, 2005
Bst4CI ACNGT 8 cut(s) 1088, 1099, 1172, 1281, 1786, 1811, 1957, 2064
Bst6I CTCTTC 4 cut(s) 24, 55, 2270, 2379
BstAUI TGTACA 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 1847
BstBI TTCGAA 2 cut(s) 995, 2018
BstC8I GCNNGC 8 cut(s) 172, 176, 1393, 1472, 1664, 1736, 1779, 2494
BstDEI CTNAG 4 cut(s) 393, 1826, 2179, 2250
BstDSI CCRYGG 1 cut(s) 968
BstF5I GGATG 7 cut(s) 64, 119, 142, 277, 394, 1208, 1278
BstFNI CGCG 2 cut(s) 204, 615
BstH2I RGCGCY 2 cut(s) 1891, 1993
BstHHI GCGC 4 cut(s) 688, 1890, 1992, 2242
BstMAI GTCTC 9 cut(s) 336, 957, 1110, 1332, 1549, 2253, 2261, 2296, 2361
BstMWI GCNNNNNNNGC 8 cut(s) 521, 590, 692, 849, 1644, 1856, 2021, 2470
BstNI CCWGG 5 cut(s) 310, 607, 1515, 1769, 2005
BstNSI RCATGY 2 cut(s) 1474, 2291
BstSCI CCNGG 5 cut(s) 308, 605, 1513, 1767, 2003
BstSFI CTRYAG 3 cut(s) 597, 1782, 2010
BstUI CGCG 2 cut(s) 204, 615
BstV1I GCAGC 6 cut(s) 852, 1846, 1996, 2024, 2224, 2254
BstV2I GAAGAC 1 cut(s) 2338
BstX2I RGATCY 4 cut(s) 1022, 1578, 1584, 2403
BstYI RGATCY 4 cut(s) 1022, 1578, 1584, 2403
BstZ17I GTATAC 1 cut(s) 2142
BsuRI GGCC 7 cut(s) 162, 469, 521, 630, 1223, 1662, 1738
BtgI CCRYGG 1 cut(s) 968
BtgZI GCGATG 1 cut(s) 596
BtrI CACGTC 3 cut(s) 1561, 2153, 2461
BtsCI GGATG 7 cut(s) 64, 119, 142, 277, 394, 1208, 1278
BtsI GCAGTG 2 cut(s) 850, 2471
BtsIMutI CAGTG 4 cut(s) 850, 1823, 1983, 2471
BtuMI TCGCGA 1 cut(s) 204
BveI ACCTGC 1 cut(s) 2187
Cac8I GCNNGC 8 cut(s) 172, 176, 1393, 1472, 1664, 1736, 1779, 2494
CfoI GCGC 4 cut(s) 688, 1890, 1992, 2242
Cfr10I RCCGGY 2 cut(s) 1734, 2492
Cfr13I GGNCC 6 cut(s) 8, 101, 161, 1221, 1737, 2386
CseI GACGC 1 cut(s) 386
Csp6I GTAC 5 cut(s) 370, 1793, 2045, 2065, 2503
CviQI GTAC 5 cut(s) 370, 1793, 2045, 2065, 2503
DdeI CTNAG 4 cut(s) 393, 1826, 2179, 2250
EaeI YGGCCR 2 cut(s) 519, 1660
Eam1104I CTCTTC 4 cut(s) 24, 55, 2270, 2379
EarI CTCTTC 4 cut(s) 24, 55, 2270, 2379
EciI GGCGGA 1 cut(s) 1743
Ecl136II GAGCTC 1 cut(s) 2206
Eco130I CCWWGG 4 cut(s) 402, 968, 1569, 2084
Eco24I GRGCYC 1 cut(s) 2208
Eco31I GGTCTC 3 cut(s) 957, 1332, 2361
Eco47I GGWCC 3 cut(s) 8, 101, 2386
Eco47III AGCGCT 2 cut(s) 1889, 1991
Eco53kI GAGCTC 1 cut(s) 2206
Eco57I CTGAAG 2 cut(s) 267, 2177
Eco72I CACGTG 1 cut(s) 1847
Eco88I CYCGRG 1 cut(s) 2514
EcoICRI GAGCTC 1 cut(s) 2206
EcoO109I RGGNCCY 1 cut(s) 2386
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 5 cut(s) 308, 605, 1513, 1767, 2003
EcoT14I CCWWGG 4 cut(s) 402, 968, 1569, 2084
EcoT22I ATGCAT 3 cut(s) 1472, 2026, 2259
EcoT38I GRGCYC 1 cut(s) 2208
ErhI CCWWGG 4 cut(s) 402, 968, 1569, 2084
FalI AAGNNNNNCTT 2 cut(s) 1923, 1955
FaqI GGGAC 3 cut(s) 326, 920, 1687
FauI CCCGC 8 cut(s) 69, 81, 197, 598, 663, 933, 1903, 2415
FbaI TGATCA 1 cut(s) 2229
FblI GTMKAC 2 cut(s) 2141, 2531
Fnu4HI GCNGC 8 cut(s) 522, 616, 841, 1860, 2010, 2013, 2238, 2243
FokI GGATG 7 cut(s) 51, 106, 129, 264, 401, 1215, 1285
FriOI GRGCYC 1 cut(s) 2208
Fsp4HI GCNGC 8 cut(s) 522, 616, 841, 1860, 2010, 2013, 2238, 2243
FspBI CTAG 4 cut(s) 318, 525, 1113, 1298
FspI TGCGCA 1 cut(s) 2241
GlaI GCGC 4 cut(s) 687, 1889, 1991, 2241
GluI GCNGC 8 cut(s) 522, 616, 841, 1860, 2010, 2013, 2238, 2243
GsuI CTGGAG 3 cut(s) 1497, 1959, 2238
HaeII RGCGCY 2 cut(s) 1891, 1993
HaeIII GGCC 7 cut(s) 162, 469, 521, 630, 1223, 1662, 1738
HapII CCGG 4 cut(s) 99, 1582, 1735, 2493
HgaI GACGC 1 cut(s) 386
HhaI GCGC 4 cut(s) 688, 1890, 1992, 2242
Hin6I GCGC 4 cut(s) 686, 1888, 1990, 2240
HinP1I GCGC 4 cut(s) 686, 1888, 1990, 2240
HincII GTYRAC 1 cut(s) 2532
HindII GTYRAC 1 cut(s) 2532
HindIII AAGCTT 1 cut(s) 1932
HpaII CCGG 4 cut(s) 99, 1582, 1735, 2493
HphI GGTGA 8 cut(s) 62, 419, 737, 1028, 1226, 1434, 1529, 2321
Hpy166II GTNNAC 5 cut(s) 623, 1525, 2142, 2505, 2532
Hpy8I GTNNAC 5 cut(s) 623, 1525, 2142, 2505, 2532
Hpy99I CGWCG 1 cut(s) 380
HpyCH4III ACNGT 8 cut(s) 1088, 1099, 1172, 1281, 1786, 1811, 1957, 2064
HpyCH4IV ACGT 6 cut(s) 633, 1426, 1560, 1846, 2152, 2460
HpyF10VI GCNNNNNNNGC 8 cut(s) 521, 590, 692, 849, 1644, 1856, 2021, 2470
HpyF3I CTNAG 4 cut(s) 393, 1826, 2179, 2250
HpySE526I ACGT 6 cut(s) 633, 1426, 1560, 1846, 2152, 2460
HspAI GCGC 4 cut(s) 686, 1888, 1990, 2240
Kpn2I TCCGGA 2 cut(s) 98, 1581
KroI GCCGGC 2 cut(s) 1734, 2492
KroNI GCCGGC 2 cut(s) 1736, 2494
Ksp22I TGATCA 1 cut(s) 2229
LmnI GCTCC 6 cut(s) 292, 667, 1856, 1960, 1978, 1987
Lsp1109I GCAGC 6 cut(s) 852, 1846, 1996, 2024, 2224, 2254
MaeI CTAG 4 cut(s) 318, 525, 1113, 1298
MaeII ACGT 6 cut(s) 633, 1426, 1560, 1846, 2152, 2460
MaeIII GTNAC 3 cut(s) 527, 1811, 2053
MbiI CCGCTC 2 cut(s) 670, 940
MboII GAAGA 9 cut(s) 41, 42, 881, 1043, 2140, 2170, 2287, 2338, 2366
MfeI CAATTG 1 cut(s) 1863
MflI RGATCY 4 cut(s) 1022, 1578, 1584, 2403
MhlI GDGCHC 1 cut(s) 2208
MlsI TGGCCA 1 cut(s) 1662
MluCI AATT 6 cut(s) 253, 472, 734, 1409, 1863, 2536
MluNI TGGCCA 1 cut(s) 1662
MlyI GAGTC 2 cut(s) 314, 2287
MmeI TCCRAC 5 cut(s) 622, 870, 1070, 1588, 2415
Mox20I TGGCCA 1 cut(s) 1662
Mph1103I ATGCAT 3 cut(s) 1472, 2026, 2259
MroI TCCGGA 2 cut(s) 98, 1581
MroNI GCCGGC 2 cut(s) 1734, 2492
MroXI GAANNNNTTC 1 cut(s) 2320
MscI TGGCCA 1 cut(s) 1662
MseI TTAA 5 cut(s) 477, 1358, 1422, 2091, 2539
MslI CAYNNNNRTG 2 cut(s) 579, 1849
Msp20I TGGCCA 1 cut(s) 1662
MspA1I CMGCKG 2 cut(s) 1591, 2245
MspI CCGG 4 cut(s) 99, 1582, 1735, 2493
MspR9I CCNGG 5 cut(s) 310, 607, 1515, 1769, 2005
MunI CAATTG 1 cut(s) 1863
Mva1269I GAATGC 6 cut(s) 249, 574, 1332, 1472, 1559, 2026
MvaI CCWGG 5 cut(s) 310, 607, 1515, 1769, 2005
MvnI CGCG 2 cut(s) 204, 615
MwoI GCNNNNNNNGC 8 cut(s) 521, 590, 692, 849, 1644, 1856, 2021, 2470
NaeI GCCGGC 2 cut(s) 1736, 2494
NcoI CCATGG 1 cut(s) 968
NgoMIV GCCGGC 2 cut(s) 1734, 2492
NlaIV GGNNCC 7 cut(s) 163, 1222, 1586, 1604, 1918, 1962, 2405
NmuCI GTSAC 1 cut(s) 527
NruI TCGCGA 1 cut(s) 204
NsbI TGCGCA 1 cut(s) 2241
NsiI ATGCAT 3 cut(s) 1472, 2026, 2259
NspI RCATGY 2 cut(s) 1474, 2291
NspV TTCGAA 2 cut(s) 995, 2018
OliI CACNNNNGTG 1 cut(s) 1849
PaeI GCATGC 1 cut(s) 1474
PctI GAATGC 6 cut(s) 249, 574, 1332, 1472, 1559, 2026
PdiI GCCGGC 2 cut(s) 1736, 2494
PdmI GAANNNNTTC 1 cut(s) 2320
PflMI CCANNNNNTGG 2 cut(s) 974, 1570
PfoI TCCNGGA 1 cut(s) 1767
PkrI GCNGC 8 cut(s) 523, 617, 842, 1861, 2011, 2014, 2239, 2244
PleI GAGTC 2 cut(s) 313, 2286
PmaCI CACGTG 1 cut(s) 1847
PmlI CACGTG 1 cut(s) 1847
PpsI GAGTC 2 cut(s) 313, 2286
Ppu21I YACGTR 1 cut(s) 1847
PpuMI RGGWCCY 1 cut(s) 2386
PsiI TTATAA 1 cut(s) 1455
Psp124BI GAGCTC 1 cut(s) 2208
Psp5II RGGWCCY 1 cut(s) 2386
Psp6I CCWGG 5 cut(s) 308, 605, 1513, 1767, 2003
PspCI CACGTG 1 cut(s) 1847
PspGI CCWGG 5 cut(s) 308, 605, 1513, 1767, 2003
PspN4I GGNNCC 7 cut(s) 163, 1222, 1586, 1604, 1918, 1962, 2405
PspPI GGNCC 6 cut(s) 8, 101, 161, 1221, 1737, 2386
PspPPI RGGWCCY 1 cut(s) 2386
PstI CTGCAG 1 cut(s) 2014
PsuI RGATCY 4 cut(s) 1022, 1578, 1584, 2403
PvuII CAGCTG 2 cut(s) 1591, 2245
RruI TCGCGA 1 cut(s) 204
RsaI GTAC 5 cut(s) 371, 1794, 2046, 2066, 2504
RsaNI GTAC 5 cut(s) 370, 1793, 2045, 2065, 2503
RseI CAYNNNNRTG 2 cut(s) 579, 1849
SacI GAGCTC 1 cut(s) 2208
SalI GTCGAC 1 cut(s) 2530
SaqAI TTAA 5 cut(s) 477, 1358, 1422, 2091, 2539
SatI GCNGC 8 cut(s) 522, 616, 841, 1860, 2010, 2013, 2238, 2243
Sau96I GGNCC 6 cut(s) 8, 101, 161, 1221, 1737, 2386
ScaI AGTACT 1 cut(s) 1794
SchI GAGTC 2 cut(s) 314, 2287
ScrFI CCNGG 5 cut(s) 310, 607, 1515, 1769, 2005
SduI GDGCHC 1 cut(s) 2208
SfcI CTRYAG 3 cut(s) 597, 1782, 2010
SfuI TTCGAA 2 cut(s) 995, 2018
SinI GGWCC 3 cut(s) 8, 101, 2386
SmiMI CAYNNNNRTG 2 cut(s) 579, 1849
SphI GCATGC 1 cut(s) 1474
Sse9I AATT 6 cut(s) 253, 472, 734, 1409, 1863, 2536
SspI AATATT 1 cut(s) 1362
SspMI CTAG 4 cut(s) 318, 525, 1113, 1298
SstI GAGCTC 1 cut(s) 2208
StyD4I CCNGG 5 cut(s) 308, 605, 1513, 1767, 2003
StyI CCWWGG 4 cut(s) 402, 968, 1569, 2084
TaaI ACNGT 8 cut(s) 1088, 1099, 1172, 1281, 1786, 1811, 1957, 2064
TaiI ACGT 6 cut(s) 636, 1429, 1563, 1849, 2155, 2463
TaqI TCGA 7 cut(s) 241, 251, 995, 1789, 1840, 2018, 2531
TasI AATT 6 cut(s) 253, 472, 734, 1409, 1863, 2536
TatI WGTACW 4 cut(s) 369, 1792, 2064, 2502
TauI GCSGC 2 cut(s) 524, 618
Tru1I TTAA 5 cut(s) 477, 1358, 1422, 2091, 2539
Tru9I TTAA 5 cut(s) 477, 1358, 1422, 2091, 2539
TscAI CASTG 4 cut(s) 850, 1830, 1983, 2471
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 6 cut(s) 840, 1859, 2009, 2012, 2237, 2242
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 4 cut(s) 150, 1359, 1566, 2274
TspGWI ACGGA 3 cut(s) 677, 1868, 2339
TspRI CASTG 4 cut(s) 850, 1830, 1983, 2471
Van91I CCANNNNNTGG 2 cut(s) 974, 1570
VpaK11BI GGWCC 3 cut(s) 8, 101, 2386
XapI RAATTY 3 cut(s) 253, 472, 734
XbaI TCTAGA 1 cut(s) 1112
XceI RCATGY 2 cut(s) 1474, 2291
XcmI CCANNNNNNNNNTGG 2 cut(s) 638, 1655
XmiI GTMKAC 2 cut(s) 2141, 2531
XmnI GAANNNNTTC 1 cut(s) 2320
XspI CTAG 4 cut(s) 318, 525, 1113, 1298
ZrmI AGTACT 1 cut(s) 1794
Zsp2I ATGCAT 3 cut(s) 1472, 2026, 2259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.