Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006040.1

Orthogroup ID

OG0005647

Physical Location & Seq

Genomic Coordinates Reverse (-)

83982 .. 85996

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006040.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgagtggtgcaccaaagagatctcatgaagagagcggccattcctcctcttcgaagtacccacatgaagattcaggaacataccccaagctgccgccatcagtttcaaatgagtatcatcaaccctatgagatgggtcaagattctcgactcgcgaagattccccgtacagaatcccgcgatgcggatagaagatctcccctgcattcaatatatcgaatgccatcagcttcaaatgatttgcatgtcgatcaccctcctgcttctgaaaacaggttggaatccagagattccaaggatactcgagatcttcggtttgagaaccgagacaaaaagactgagacaagggaaccatacagtgaggtaagaagggatactccaaatcctaaggttgaaaaggatgtgagacatgacagtagaggggatgataataaggaggtgaaatctgaaagggagaattatactgatgctaaggctgacctcaaagcggaaggttatggtgtggcaagtagtcacttaaattataaagaatcaaaagagtaccatagaggaaagcgatattctgatgctccagtaggaagtacagatacgtggcatcgcagtacttcacaaggccatgttgaggttggaaaggaagtccccactactgaggagcgagatcatgtagaggcacatgaggctgttggggagaacagatatgattctaaaggtgatgataagttcaaagacaaggatagaaaaaggaaagacataaagcatcgggattggggagaaagggacaaggaaagaagtgaccgtaggagcaatgtgcaagtagctaacagcagtagtgattgcaaagactcggcaaaggaagaaagagatgcagagaggtgggagcgtgagcggagggacactgcaaaagataaggaaatactaaaagagagggaaagggatcataccaagagagatacatggagtggagtagagaaagatagttcaaatactgagaaggaagtgggggatgggtctatcagaatgccagagcatgaaactctgccaccagagcagaagaaacagaaagattttgaaagttggagaactgctgatagggaatcgagagataggaggaaagaaagagatgttgacgctgacggagagagacctgaaaagcgcattaggggttatgacaaagaatcagatgatggaggtgcagatggtgaagcggctacagacaaagaaagggaagtttataattatggagttcagcagcgtaaaaggatgcaacggtcaagggctaccccagcaaatcgggagctgcgttttagatcacatacacaagacaatgaaggatcccaaggtgcgctgttacattctattttcgtgcaagaggaatttgtgtcttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rxt3

Protein Analysis

462

Amino Acids

53.76

Weight (kDa)

6.22

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08450 AT5G08450 AT5G08450
fragaria_vesca	FvH4_1g25880 FvH4_1g25880 FvH4_1g25880 FvH4_1g25880
malus_domestica	MD15G1140800.v1.1
prunus_persica	Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1
pyrus_communis	pycom15g12720
rosa_chinensis	RchiOBHm_Chr3g0485021
rosa_laevigata	RLG00000023175
rosa_multiflora	Rmu_co8484793.1_g000001 Rmu_sc0006040.1_g000018 Rmu_sc0006040.1_g000019 Rmu_sc0039594.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397250
rosa_rugosa	Rorug03G0215200 Rorug03G0215200
rosa_samantha	Rh3AG265600 Rh3BG301200 Rh3CG299500 Rh3DG295300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	525, 1233
AccBSI	CCGCTC	2 cut(s)	36, 886
AccII	CGCG	2 cut(s)	155, 180
AciI	CCGC	7 cut(s)	36, 95, 178, 185, 488, 886, 1205
AclWI	GGATC	3 cut(s)	942, 1326, 1339
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	1373
AfaI	GTAC	5 cut(s)	59, 169, 542, 583, 604
AfiI	CCNNNNNNNGG	3 cut(s)	184, 487, 622
AgsI	TTSAA	7 cut(s)	108, 210, 234, 395, 724, 981, 1070
AluBI	AGCT	4 cut(s)	91, 230, 818, 1297
AluI	AGCT	4 cut(s)	91, 230, 818, 1297
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	4 cut(s)	321, 335, 400, 1135
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	942, 1326, 1339
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	2 cut(s)	37, 613
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	3 cut(s)	91, 1249, 1297
ApoI	RAATTY	1 cut(s)	1373
AspLEI	GCGC	2 cut(s)	1155, 1345
AsuHPI	GGTGA	4 cut(s)	245, 451, 722, 1211
AsuII	TTCGAA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	303
AxyI	CCTNAGG	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	1331
BarI	GAAGNNNNNNTAC	2 cut(s)	571, 603
BbsI	GAAGAC	1 cut(s)	1374
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	78, 1261, 1284
BccI	CCATC	6 cut(s)	106, 127, 232, 998, 1178, 1190
BciVI	GTATCC	2 cut(s)	292, 367
BcoDI	GTCTC	4 cut(s)	321, 335, 400, 1135
BfmI	CTRYAG	1 cut(s)	1209
BfuI	GTATCC	2 cut(s)	292, 367
BglII	AGATCT	3 cut(s)	20, 194, 307
BisI	GCNGC	6 cut(s)	37, 92, 95, 1206, 1250, 1298
BlsI	GCNGC	6 cut(s)	38, 93, 96, 1207, 1251, 1299
BmcAI	AGTACT	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	351, 1333
BmsI	GCATC	7 cut(s)	172, 457, 556, 604, 766, 853, 1251
BpiI	GAAGAC	1 cut(s)	1374
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	1135
BsaJI	CCNNGG	2 cut(s)	294, 1336
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 487, 622
Bse1I	ACTGG	1 cut(s)	572
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	811
BseDI	CCNNGG	2 cut(s)	294, 1336
BseGI	GGATG	4 cut(s)	406, 430, 1009, 1266
BseLI	CCNNNNNNNGG	3 cut(s)	184, 487, 622
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	3 cut(s)	330, 639, 978
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	2 cut(s)	37, 665
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	78, 1261, 1284
BseYI	CCCAGC	1 cut(s)	1282
BsgI	GTGCAG	1 cut(s)	1212
Bsh1236I	CGCG	2 cut(s)	155, 180
BshFI	GGCC	2 cut(s)	39, 615
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	303
BslFI	GGGAC	3 cut(s)	623, 791, 905
BslI	CCNNNNNNNGG	3 cut(s)	184, 487, 622
BsmAI	GTCTC	4 cut(s)	321, 335, 400, 1135
BsmFI	GGGAC	3 cut(s)	623, 791, 905
BsmI	GAATGC	3 cut(s)	205, 225, 1023
BsnI	GGCC	2 cut(s)	39, 615
Bso31I	GGTCTC	1 cut(s)	1135
BsoBI	CYCGRG	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	7 cut(s)	36, 95, 178, 185, 488, 886, 1205
BspANI	GGCC	2 cut(s)	39, 615
BspCNI	CTCAG	3 cut(s)	331, 640, 979
BspFNI	CGCG	2 cut(s)	155, 180
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	351, 1333
BspPI	GGATC	3 cut(s)	942, 1326, 1339
BspT104I	TTCGAA	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	1135
BsrBI	CCGCTC	2 cut(s)	36, 886
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	294, 1336
BssMI	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
BssT1I	CCWWGG	2 cut(s)	294, 1336
Bst4CI	ACNGT	4 cut(s)	359, 416, 797, 1269
Bst6I	CTCTTC	2 cut(s)	24, 55
BstBAI	YACGTR	1 cut(s)	591
BstBI	TTCGAA	1 cut(s)	53
BstDEI	CTNAG	5 cut(s)	339, 387, 471, 648, 987
BstF5I	GGATG	4 cut(s)	406, 430, 1009, 1266
BstFNI	CGCG	2 cut(s)	155, 180
BstHHI	GCGC	2 cut(s)	1155, 1345
BstKTI	GATC	8 cut(s)	23, 197, 253, 310, 661, 937, 1310, 1334
BstMAI	GTCTC	4 cut(s)	321, 335, 400, 1135
BstMBI	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
BstMWI	GCNNNNNNNGC	3 cut(s)	677, 1045, 1283
BstNSI	RCATGY	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	1209
BstSLI	GKGCMC	1 cut(s)	13
BstUI	CGCG	2 cut(s)	155, 180
BstV1I	GCAGC	3 cut(s)	78, 1261, 1284
BstV2I	GAAGAC	1 cut(s)	1374
BstX2I	RGATCY	4 cut(s)	20, 194, 307, 1331
BstYI	RGATCY	4 cut(s)	20, 194, 307, 1331
Bsu36I	CCTNAGG	1 cut(s)	387
BsuI	GTATCC	2 cut(s)	292, 367
BsuRI	GGCC	2 cut(s)	39, 615
BtgZI	GCGATG	2 cut(s)	195, 581
BtsCI	GGATG	4 cut(s)	406, 430, 1009, 1266
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	2 cut(s)	364, 894
BtuMI	TCGCGA	1 cut(s)	155
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	2 cut(s)	1155, 1345
CseI	GACGC	1 cut(s)	1136
Csp6I	GTAC	5 cut(s)	58, 168, 541, 582, 603
CviAII	CATG	9 cut(s)	26, 65, 245, 410, 617, 662, 674, 954, 1028
CviQI	GTAC	5 cut(s)	58, 168, 541, 582, 603
DdeI	CTNAG	5 cut(s)	339, 387, 471, 648, 987
DpnI	GATC	8 cut(s)	22, 196, 252, 309, 660, 936, 1309, 1333
DpnII	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	24, 55
EarI	CTCTTC	2 cut(s)	24, 55
Eco130I	CCWWGG	2 cut(s)	294, 1336
Eco31I	GGTCTC	1 cut(s)	1135
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	294, 1336
ErhI	CCWWGG	2 cut(s)	294, 1336
FaeI	CATG	9 cut(s)	29, 68, 248, 413, 620, 665, 677, 957, 1031
FaqI	GGGAC	3 cut(s)	623, 791, 905
FatI	CATG	9 cut(s)	25, 64, 244, 409, 616, 661, 673, 953, 1027
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	6 cut(s)	37, 92, 95, 1206, 1250, 1298
FokI	GGATG	4 cut(s)	413, 437, 1016, 1273
Fsp4HI	GCNGC	6 cut(s)	37, 92, 95, 1206, 1250, 1298
GlaI	GCGC	2 cut(s)	1154, 1344
GluI	GCNGC	6 cut(s)	37, 92, 95, 1206, 1250, 1298
GsaI	CCCAGC	1 cut(s)	1286
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	39, 615
HgaI	GACGC	1 cut(s)	1136
HhaI	GCGC	2 cut(s)	1155, 1345
Hin1II	CATG	9 cut(s)	29, 68, 248, 413, 620, 665, 677, 957, 1031
Hin6I	GCGC	2 cut(s)	1153, 1343
HinP1I	GCGC	2 cut(s)	1153, 1343
HincII	GTYRAC	1 cut(s)	1126
HindII	GTYRAC	1 cut(s)	1126
HphI	GGTGA	4 cut(s)	245, 451, 722, 1211
Hpy166II	GTNNAC	2 cut(s)	11, 1126
Hpy188I	TCNGA	5 cut(s)	268, 448, 565, 1016, 1180
Hpy8I	GTNNAC	2 cut(s)	11, 1126
HpyAV	CCTTC	4 cut(s)	363, 485, 985, 1322
HpyCH4III	ACNGT	4 cut(s)	359, 416, 797, 1269
HpyCH4IV	ACGT	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	677, 1045, 1283
HpyF3I	CTNAG	5 cut(s)	339, 387, 471, 648, 987
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	9 cut(s)	29, 68, 248, 413, 620, 665, 677, 957, 1031
HspAI	GCGC	2 cut(s)	1153, 1343
Kzo9I	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
LmnI	GCTCC	5 cut(s)	574, 652, 801, 877, 1294
Lsp1109I	GCAGC	3 cut(s)	78, 1261, 1284
LweI	GCATC	7 cut(s)	172, 457, 556, 604, 766, 853, 1251
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	3 cut(s)	512, 791, 1347
MalI	GATC	8 cut(s)	22, 196, 252, 309, 660, 936, 1309, 1333
MbiI	CCGCTC	2 cut(s)	36, 886
MboI	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
MboII	GAAGA	9 cut(s)	41, 42, 80, 169, 204, 302, 866, 1063, 1374
MflI	RGATCY	4 cut(s)	20, 194, 307, 1331
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	457, 520, 1234, 1373
MlyI	GAGTC	2 cut(s)	144, 836
MmeI	TCCRAC	3 cut(s)	258, 607, 1055
MseI	TTAA	1 cut(s)	518
Mva1269I	GAATGC	3 cut(s)	205, 225, 1023
MvnI	CGCG	2 cut(s)	155, 180
MwoI	GCNNNNNNNGC	3 cut(s)	677, 1045, 1283
NdeII	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
NlaIII	CATG	9 cut(s)	29, 68, 248, 413, 620, 665, 677, 957, 1031
NlaIV	GGNNCC	2 cut(s)	351, 1333
NmeAIII	GCCGAG	1 cut(s)	824
NmuCI	GTSAC	2 cut(s)	512, 791
NruI	TCGCGA	1 cut(s)	155
NspI	RCATGY	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	303
PagI	TCATGA	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	1297
PctI	GAATGC	3 cut(s)	205, 225, 1023
PkrI	GCNGC	6 cut(s)	38, 93, 96, 1207, 1251, 1299
PleI	GAGTC	2 cut(s)	144, 836
PpsI	GAGTC	2 cut(s)	144, 836
Ppu21I	YACGTR	1 cut(s)	591
PsiI	TTATAA	2 cut(s)	525, 1233
PspFI	CCCAGC	1 cut(s)	1282
PspN4I	GGNNCC	2 cut(s)	351, 1333
PsuI	RGATCY	4 cut(s)	20, 194, 307, 1331
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	5 cut(s)	59, 169, 542, 583, 604
RsaNI	GTAC	5 cut(s)	58, 168, 541, 582, 603
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	6 cut(s)	37, 92, 95, 1206, 1250, 1298
Sau3AI	GATC	8 cut(s)	20, 194, 250, 307, 658, 934, 1307, 1331
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	2 cut(s)	144, 836
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	7 cut(s)	172, 457, 556, 604, 766, 853, 1251
SfcI	CTRYAG	1 cut(s)	1209
Sfr274I	CTCGAG	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	457, 520, 1234, 1373
SsiI	CCGC	7 cut(s)	36, 95, 178, 185, 488, 886, 1205
StyI	CCWWGG	2 cut(s)	294, 1336
TaaI	ACNGT	4 cut(s)	359, 416, 797, 1269
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	6 cut(s)	53, 148, 217, 249, 304, 1097
TasI	AATT	4 cut(s)	457, 520, 1234, 1373
TatI	WGTACW	2 cut(s)	581, 602
TauI	GCSGC	3 cut(s)	39, 97, 1208
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	2 cut(s)	364, 901
TseFI	GTSAC	2 cut(s)	512, 791
TseI	GCWGC	3 cut(s)	91, 1249, 1297
Tsp45I	GTSAC	2 cut(s)	512, 791
TspDTI	ATGAA	4 cut(s)	42, 81, 1044, 1341
TspGWI	ACGGA	1 cut(s)	1149
TspRI	CASTG	2 cut(s)	364, 901
VneI	GTGCAC	1 cut(s)	9
XapI	RAATTY	1 cut(s)	1373
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.