Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039594.1

Orthogroup ID

OG0005647

Physical Location & Seq

Genomic Coordinates Reverse (-)

2644 .. 8603

Gene Structure 5960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039594.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgccatatgctaacactgctactgtttcaggtaaagctgaagtatcttctgttgtttataaagtcggtgaatgcatgcaagaattgataaagttatggaaggaacatgaagcatctccgggtgaaaaaaatggtgaaacctctgttaccggtccgacacttgaaattcggataccttccgagcatgttacagcaacaaatcgccaagttagaggtggtcaactgtggggaacagatatatacacagatgattcagatcttgttgctgtcctcatgcatacagggtattgccgacccacagcgtctcctccaccttctgctatccaggagttgcgtgctacagttcgaatactacccccacaagactgttacatttctaccctgagaaataatgttcgttctcgtgcgtggggagctgctattggttgtagctatcgtgttgagcgctgctgcatagtgaagaaagcaggaggaagtatcgatcttgaaccatgtctaacacatacttctacagtggagcctactcttgctccagttgttgttgagcgtacaatgactacaagggctgcagcttcgaatgcattgcgacaacaaagatttgtacgagaagttactatacagtacaacctctgcaatgagccttggatcaaatacagcataagcattgttgctgacaagggtttgaagaagaccctttatacttctgcacgtttaaagaagggagaagttctctatttagaaacacattcatgcaggtatgagctctgttttaatggggagaagatcatcaaagccagtcaattatctcagatgcatgaaggtgagaatgagaagaatcagaatcatgcttcgcattccacaaatggtgaacgaaatgattctgaaaacattatagtagatgtatttcgatggtctcgatgtaaaacacctcttccccagaaggtcatgcggtcagttgggatccctttgccccttgaacatgtggaggtgttggaggaaaatcttgactgggaggatgtgcaatggtcacagactggcgtttggattgctggaaaagagtattcacttgcacgggtgcattttctgtctgtaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rxt3

Protein Analysis

365

Amino Acids

40.89

Weight (kDa)

7.12

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08450 AT5G08450 AT5G08450
fragaria_vesca	FvH4_1g25880 FvH4_1g25880 FvH4_1g25880 FvH4_1g25880
malus_domestica	MD15G1140800.v1.1
prunus_persica	Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1 Prupe.4G280600_v2.0.a1
pyrus_communis	pycom15g12720
rosa_chinensis	RchiOBHm_Chr3g0485021
rosa_laevigata	RLG00000023175
rosa_multiflora	Rmu_co8484793.1_g000001 Rmu_sc0006040.1_g000018 Rmu_sc0006040.1_g000019 Rmu_sc0039594.1_g000002
rosa_roxburghii	Rroxscaffold_6G00397250
rosa_rugosa	Rorug03G0215200 Rorug03G0215200
rosa_samantha	Rh3AG265600 Rh3BG301200 Rh3CG299500 Rh3DG295300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	744
AciI	CCGC	1 cut(s)	949
AclWI	GGATC	3 cut(s)	653, 955, 968
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	3 cut(s)	550, 603, 623
AfeI	AGCGCT	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	979
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	164, 488, 685, 977
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	38, 416, 432, 572, 763
AluI	AGCT	5 cut(s)	38, 416, 432, 572, 763
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	2 cut(s)	309, 918
AlwI	GGATC	3 cut(s)	653, 955, 968
Aor51HI	AGCGCT	1 cut(s)	446
ApeKI	GCWGC	5 cut(s)	416, 447, 450, 566, 569
ApoI	RAATTY	1 cut(s)	165
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	877
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	5 cut(s)	80, 134, 146, 833, 878
AsuII	TTCGAA	2 cut(s)	346, 575
AvaII	GGWCC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	960
BanII	GRGCYC	1 cut(s)	765
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	5 cut(s)	403, 434, 437, 553, 581
BccI	CCATC	1 cut(s)	903
BcgI	CGANNNNNNTGC	2 cut(s)	565, 599
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	309, 918
BfmI	CTRYAG	3 cut(s)	339, 510, 567
BfoI	RGCGCY	1 cut(s)	448
BfuAI	ACCTGC	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	5 cut(s)	417, 448, 451, 567, 570
BlsI	GCNGC	5 cut(s)	418, 449, 452, 568, 571
Bme1390I	CCNGG	2 cut(s)	120, 326
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	519, 962
BmrFI	CCNGG	2 cut(s)	120, 326
BmrI	ACTGGG	1 cut(s)	1018
BmsI	GCATC	2 cut(s)	122, 801
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	1 cut(s)	695
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	2 cut(s)	346, 575
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	918
BsaJI	CCNNGG	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 514, 544
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	4 cut(s)	533, 795, 1013, 1039
Bse3DI	GCAATG	3 cut(s)	581, 640, 1028
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	1 cut(s)	1021
BseJI	GATNNNNATC	1 cut(s)	255
BseMI	GCAATG	3 cut(s)	581, 640, 1028
BseMII	CTCAG	2 cut(s)	374, 821
BseNI	ACTGG	4 cut(s)	533, 795, 1013, 1039
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	5 cut(s)	403, 434, 437, 553, 581
BsgI	GTGCAG	1 cut(s)	690
BshTI	ACCGGT	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	119, 150
BsmAI	GTCTC	2 cut(s)	309, 918
BsmBI	CGTCTC	1 cut(s)	309
BsmI	GAATGC	3 cut(s)	77, 583, 853
Bso31I	GGTCTC	1 cut(s)	918
Bsp119I	TTCGAA	2 cut(s)	346, 575
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	5 cut(s)	256, 481, 645, 783, 960
BspACI	CCGC	1 cut(s)	949
BspCNI	CTCAG	2 cut(s)	375, 820
BspDI	ATCGAT	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	519, 962
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	744
BspPI	GGATC	3 cut(s)	653, 955, 968
BspT104I	TTCGAA	2 cut(s)	346, 575
BspTNI	GGTCTC	1 cut(s)	918
BsrDI	GCAATG	3 cut(s)	581, 640, 1028
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	4 cut(s)	533, 795, 1013, 1039
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	5 cut(s)	256, 481, 645, 783, 960
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	641
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	6 cut(s)	25, 225, 343, 368, 514, 621
Bst6I	CTCTTC	1 cut(s)	936
BstBI	TTCGAA	2 cut(s)	346, 575
BstC8I	GCNNGC	2 cut(s)	77, 336
BstDEI	CTNAG	2 cut(s)	383, 807
BstF5I	GGATG	1 cut(s)	1021
BstH2I	RGCGCY	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	5 cut(s)	259, 484, 648, 786, 963
BstMAI	GTCTC	2 cut(s)	309, 918
BstMBI	GATC	5 cut(s)	256, 481, 645, 783, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 413, 578
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	3 cut(s)	79, 188, 983
BstSCI	CCNGG	2 cut(s)	118, 324
BstSFI	CTRYAG	3 cut(s)	339, 510, 567
BstV1I	GCAGC	5 cut(s)	403, 434, 437, 553, 581
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	2 cut(s)	256, 960
BstYI	RGATCY	2 cut(s)	256, 960
Bsu15I	ATCGAT	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	1021
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 519
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	2 cut(s)	77, 336
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	480
CpoI	CGGWCCG	1 cut(s)	152
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	549, 602, 622
CspAI	ACCGGT	1 cut(s)	149
CspI	CGGWCCG	1 cut(s)	152
CviJI	RGCY	9 cut(s)	38, 416, 432, 520, 566, 572, 640, 763, 794
CviKI_1	RGCY	9 cut(s)	38, 416, 432, 520, 566, 572, 640, 763, 794
CviQI	GTAC	3 cut(s)	549, 602, 622
DdeI	CTNAG	2 cut(s)	383, 807
DpnI	GATC	5 cut(s)	258, 483, 647, 785, 962
DpnII	GATC	5 cut(s)	256, 481, 645, 783, 960
DraI	TTTAAA	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Ecl136II	GAGCTC	1 cut(s)	763
Eco130I	CCWWGG	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	641
EcoT22I	ATGCAT	4 cut(s)	77, 279, 583, 816
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	641
Esp3I	CGTCTC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	5 cut(s)	417, 448, 451, 567, 570
FokI	GGATG	1 cut(s)	1028
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	5 cut(s)	417, 448, 451, 567, 570
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	5 cut(s)	417, 448, 451, 567, 570
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	448
HapII	CCGG	2 cut(s)	119, 150
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	447
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	4 cut(s)	251, 835, 841, 878
HpaII	CCGG	2 cut(s)	119, 150
HphI	GGTGA	5 cut(s)	80, 134, 146, 833, 878
Hpy166II	GTNNAC	2 cut(s)	221, 869
Hpy188I	TCNGA	7 cut(s)	156, 171, 181, 256, 810, 840, 883
Hpy188III	TCNNGA	3 cut(s)	485, 915, 1004
Hpy8I	GTNNAC	2 cut(s)	221, 869
HpyAV	CCTTC	6 cut(s)	94, 186, 324, 712, 812, 934
HpyCH4III	ACNGT	6 cut(s)	25, 225, 343, 368, 514, 621
HpyCH4IV	ACGT	1 cut(s)	709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 413, 578
HpyF3I	CTNAG	2 cut(s)	383, 807
HpySE526I	ACGT	1 cut(s)	709
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	5 cut(s)	256, 481, 645, 783, 960
LmnI	GCTCC	3 cut(s)	413, 517, 535
Lsp1109I	GCAGC	5 cut(s)	403, 434, 437, 553, 581
LweI	GCATC	2 cut(s)	122, 801
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	5 cut(s)	145, 187, 368, 610, 1026
MalI	GATC	5 cut(s)	258, 483, 647, 785, 962
MboI	GATC	5 cut(s)	256, 481, 645, 783, 960
MboII	GAAGA	7 cut(s)	39, 472, 697, 700, 793, 844, 923
MflI	RGATCY	2 cut(s)	256, 960
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	4 cut(s)	83, 165, 800, 1093
MmeI	TCCRAC	2 cut(s)	179, 972
Mph1103I	ATGCAT	4 cut(s)	77, 279, 583, 816
MroXI	GAANNNNTTC	1 cut(s)	877
MseI	TTAA	2 cut(s)	713, 771
MslI	CAYNNNNRTG	2 cut(s)	748, 819
MspI	CCGG	2 cut(s)	119, 150
MspR9I	CCNGG	2 cut(s)	120, 326
Mva1269I	GAATGC	3 cut(s)	77, 583, 853
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	17, 413, 578
NciI	CCSGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	5 cut(s)	256, 481, 645, 783, 960
NlaIV	GGNNCC	2 cut(s)	519, 962
NmuCI	GTSAC	1 cut(s)	1026
NsiI	ATGCAT	4 cut(s)	77, 279, 583, 816
NspI	RCATGY	3 cut(s)	79, 188, 983
NspV	TTCGAA	2 cut(s)	346, 575
PaeI	GCATGC	1 cut(s)	79
PciI	ACATGT	1 cut(s)	979
PcsI	WCGNNNNNNNCGW	1 cut(s)	913
PctI	GAATGC	3 cut(s)	77, 583, 853
PdmI	GAANNNNTTC	1 cut(s)	877
PfeI	GAWTC	4 cut(s)	251, 835, 841, 878
PfoI	TCCNGGA	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	5 cut(s)	418, 449, 452, 568, 571
PscI	ACATGT	1 cut(s)	979
PsiI	TTATAA	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	765
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	519, 962
PspPI	GGNCC	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	256, 960
RsaI	GTAC	3 cut(s)	550, 603, 623
RsaNI	GTAC	3 cut(s)	549, 602, 622
RseI	CAYNNNNRTG	2 cut(s)	748, 819
Rsr2I	CGGWCCG	1 cut(s)	152
RsrII	CGGWCCG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	765
SaqAI	TTAA	2 cut(s)	713, 771
SatI	GCNGC	5 cut(s)	417, 448, 451, 567, 570
Sau3AI	GATC	5 cut(s)	256, 481, 645, 783, 960
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	120, 326
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	2 cut(s)	122, 801
SfcI	CTRYAG	3 cut(s)	339, 510, 567
SfuI	TTCGAA	2 cut(s)	346, 575
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	748, 819
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	4 cut(s)	83, 165, 800, 1093
SsiI	CCGC	1 cut(s)	949
SstI	GAGCTC	1 cut(s)	765
StyD4I	CCNGG	2 cut(s)	118, 324
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	6 cut(s)	25, 225, 343, 368, 514, 621
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	5 cut(s)	346, 480, 575, 907, 916
TasI	AATT	4 cut(s)	83, 165, 800, 1093
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	4 cut(s)	251, 835, 841, 878
Tru1I	TTAA	2 cut(s)	713, 771
Tru9I	TTAA	2 cut(s)	713, 771
TscAI	CASTG	2 cut(s)	22, 519
TseFI	GTSAC	1 cut(s)	1026
TseI	GCWGC	5 cut(s)	416, 447, 450, 566, 569
Tsp45I	GTSAC	1 cut(s)	1026
TspDTI	ATGAA	3 cut(s)	123, 738, 831
TspRI	CASTG	2 cut(s)	22, 519
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	3 cut(s)	79, 188, 983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	877
Zsp2I	ATGCAT	4 cut(s)	77, 279, 583, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.