Rh3BG301200

Histone deacetylation protein Rxt3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005647
Physical Location & Seq
Forward (+)
30266276 .. 30274821
8546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG301200.1

Sequence Viewer

Length: 1884 bp
ATGAGTGGTGCACCAAAGAGATCTCATGAAGAGAGCGGCCATTCCTCCTCTTCGAAATACCCACATGAAGATTCAGGAACATACCCCAAGCTGCCGCCATCAGTTTCAAATGAGTATCATCAACCCTATGAGATGGGTCAAGATTCTCGACTCACGAAGATTCCCCGTACAGAATCTCGCGATGCGGATAGAAGATCTCCCCTGCATTCAATATATCGAATGCCATCAGCTTCAAATGATTTGCATGTAGATCACCCTCCTGCTTCTGAAAACAGGTTGGAATCCAGAGATTCCAAGGATACTCGAGATCTTCGGTTTGAGAACCGAGACAAAAAGACTGAGACAAGGGAACCATACAGTGAGGTAAGAAGGGATACTCCAAATGCTAAGGTTGAAAAGGATGTAAGACATGACATTAGAGGGGATGATAATAAGGAGGTGAAATCTGAAAGGGAGAATTATAATGATGTTAAGGCTGACCTCAAAGCGGAAGGTTATGGTGTGGCAAGTAGTCACTTAAATTATAAAGAATCAAAAGAGTACCATAGAGGAAAACGATATTCTGATGCGCCAGTAGGAAGTACAGATACGTGGCATCGCAGTACTTCACAAGGCCATGTTGAGGTTGGAAAGGAAGTCCCCACTACTGAGGAGCGAGATCATGTAGAGGCACATGAGGCTGTTGGGGAGAACAGATATGATTCTAAAGGTGATGATAAGTTCAAAGACAAGGATAGAAAAAGGAAAGACATAAAGCATCGGGATTGGGGAGAAAGGGACAAGGAAAGAAGTGACCGTAGGAGCAATGTGCAAGTAGCTAACAGCAGTAGTGATTGCAAAGACTCAGCAAAGGAAGAAAGAGATGCAGAGAGGTGGGAGCGTGAGCGGAGGGACACTGCAAAAGATAAGGAAATACTAAAAGAGAGGGAAAGGGATCATACCAAGAGAGATACATGGAGTGGAGTAGAGAAAGATAGTTCAAATACTGAGAAGGAAGTGGGGGATGGGTCTATCAGAATGCCAGAGCATGAAACTCTGCCACCAGAGCAGAAGAAACAGAAAGATTTTGAAAGTTGGAGAACTGCTGATAGGGAATCGAGAGATAGGAGGAAAGAAAGAGATGTTGACGCTGAGGGAGATAGACCTGAAAAGCGCATTAGGAGTTATGACAAAGAATCAGATGATGGAGGTGCAGATGGTGAAGCGGCCACAGACAAAGAAAGGGAAGTTTATAATTATGGAGTTCAGCAGCGTAAAAGGATGCAACGGTCAAGGGCTGCCCCAGCAAATCGGGAGCTGCGTTTTAGATCACATACACAAGACAATGAAGGATCCCAAGGTAAAGCTGAAGTATCTTCTGTTGTTTATAAAGTCGGTGAATGCATGCAAGAATTGATAAAGTTATGGAAGGAACATGAAGCATCTCCGGGTGAAAAAAATGGTGAAACCTCTGTTACTGGTCCGACACTTGAAATTCGGATACCTTCCGATCATGTTACAGCAACAAATCGCCAAGTTAGAGGTGGTCAACTGTGGGGAACAGATATATACACAGATGATTCAGATCTTGTTGCTGTCCTCATGCATACAGGGTATTGCCGACCCACAGCGTCTCCTCCACCTTCTGCTATCCAGGAGTTGCGTGCTACAGTTCGAATACTACCCCCACAAGACTGTAAGTCTACTGTTAGCTTATCTTTTGTGCATTCCAGAGCCATATTGTATCAATGTTTCGATGTCATTTGGATCCAACTATGCCACCCTTACTGTCAATACTGCATTGTAACTTTGGGTTGCATACTTCTATTTTGTCACTATAATTCCTTTTGTGCCAGTTGCAACATTAATAGAACTGGGAGGGGATTATTAGATCACTGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rxt3

Protein Analysis

627

Amino Acids

72.27

Weight (kDa)

6.37

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rxt3 PF08642 491 - 535 1.6e-11 Histone deacetylation protein Rxt3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 462, 525, 1233, 1368
AccBSI CCGCTC 2 cut(s) 36, 886
AccI GTMKAC 1 cut(s) 1682
AccII CGCG 1 cut(s) 180
AciI CCGC 6 cut(s) 36, 95, 185, 488, 886, 1205
AclWI GGATC 5 cut(s) 942, 1326, 1339, 1741, 1754
AcoI YGGCCR 2 cut(s) 37, 1206
AcsI RAATTY 1 cut(s) 1473
AcuI CTGAAG 1 cut(s) 1368
AfaI GTAC 4 cut(s) 169, 542, 583, 604
AfiI CCNNNNNNNGG 2 cut(s) 487, 622
AgsI TTSAA 8 cut(s) 108, 210, 234, 395, 724, 981, 1070, 1472
AhdI GACNNNNNGTC 1 cut(s) 1678
AjnI CCWGG 1 cut(s) 1632
AluBI AGCT 6 cut(s) 91, 230, 818, 1297, 1346, 1692
AluI AGCT 6 cut(s) 91, 230, 818, 1297, 1346, 1692
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 3 cut(s) 321, 335, 1617
Alw44I GTGCAC 1 cut(s) 9
AlwI GGATC 5 cut(s) 942, 1326, 1339, 1741, 1754
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 3 cut(s) 37, 613, 1206
ApaLI GTGCAC 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 91, 1249, 1277, 1297
ApoI RAATTY 1 cut(s) 1473
AseI ATTAAT 1 cut(s) 1845
AspLEI GCGC 2 cut(s) 571, 1155
AspS9I GGNCC 1 cut(s) 1460
AsuC2I CCSGG 1 cut(s) 1428
AsuHPI GGTGA 7 cut(s) 245, 451, 722, 1211, 1388, 1442, 1454
AsuII TTCGAA 2 cut(s) 53, 1654
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 1460
BaeGI GKGCMC 1 cut(s) 13
BamHI GGATCC 2 cut(s) 1331, 1746
BarI GAAGNNNNNNTAC 2 cut(s) 571, 603
Bbv12I GWGCWC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 1131
BbvI GCAGC 4 cut(s) 78, 1261, 1264, 1284
BccI CCATC 6 cut(s) 106, 127, 232, 998, 1178, 1190
BciT130I CCWGG 1 cut(s) 1634
BciVI GTATCC 3 cut(s) 292, 367, 1473
BcnI CCSGG 1 cut(s) 1428
BcoDI GTCTC 3 cut(s) 321, 335, 1617
BfmI CTRYAG 1 cut(s) 1647
BfuI GTATCC 3 cut(s) 292, 367, 1473
BglII AGATCT 4 cut(s) 20, 194, 307, 1564
BisI GCNGC 7 cut(s) 37, 92, 95, 1206, 1250, 1278, 1298
BlsI GCNGC 7 cut(s) 38, 93, 96, 1207, 1251, 1279, 1299
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 2 cut(s) 1428, 1634
Bme18I GGWCC 1 cut(s) 1460
BmeRI GACNNNNNGTC 1 cut(s) 1678
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 1460
BmiI GGNNCC 3 cut(s) 351, 1333, 1748
BmrFI CCNGG 2 cut(s) 1428, 1634
BmrI ACTGGG 1 cut(s) 1863
BmsI GCATC 7 cut(s) 172, 556, 604, 766, 853, 1251, 1430
BmuI ACTGGG 1 cut(s) 1863
Bpu10I CCTNAGC 2 cut(s) 387, 1131
Bpu14I TTCGAA 2 cut(s) 53, 1654
BpuMI CCSGG 1 cut(s) 1428
BsaAI YACGTR 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 1563
BsaJI CCNNGG 2 cut(s) 294, 1336
BsaXI ACNNNNNCTCC 2 cut(s) 1597, 1627
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 622
Bse1I ACTGG 5 cut(s) 572, 1462, 1833, 1858, 1880
Bse3DI GCAATG 1 cut(s) 811
Bse8I GATNNNNATC 1 cut(s) 1563
BseBI CCWGG 1 cut(s) 1634
BseDI CCNNGG 2 cut(s) 294, 1336
BseGI GGATG 4 cut(s) 406, 430, 1009, 1266
BseJI GATNNNNATC 1 cut(s) 1563
BseLI CCNNNNNNNGG 2 cut(s) 487, 622
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 5 cut(s) 330, 639, 858, 978, 1122
BseNI ACTGG 5 cut(s) 572, 1462, 1833, 1858, 1880
BseRI GAGGAG 3 cut(s) 37, 665, 1605
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 4 cut(s) 78, 1261, 1264, 1284
BseYI CCCAGC 1 cut(s) 1282
BsgI GTGCAG 1 cut(s) 1212
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 39, 615, 1208
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 1427
BslFI GGGAC 3 cut(s) 623, 791, 905
BslI CCNNNNNNNGG 2 cut(s) 487, 622
BsmAI GTCTC 3 cut(s) 321, 335, 1617
BsmBI CGTCTC 1 cut(s) 1617
BsmFI GGGAC 3 cut(s) 623, 791, 905
BsmI GAATGC 5 cut(s) 205, 225, 1023, 1385, 1705
BsnI GGCC 3 cut(s) 39, 615, 1208
BsoBI CYCGRG 1 cut(s) 303
Bsp119I TTCGAA 2 cut(s) 53, 1654
Bsp1286I GDGCHC 1 cut(s) 13
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 6 cut(s) 36, 95, 185, 488, 886, 1205
BspANI GGCC 3 cut(s) 39, 615, 1208
BspCNI CTCAG 5 cut(s) 331, 640, 857, 979, 1123
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 351, 1333, 1748
BspPI GGATC 5 cut(s) 942, 1326, 1339, 1741, 1754
BspT104I TTCGAA 2 cut(s) 53, 1654
BsrBI CCGCTC 2 cut(s) 36, 886
BsrDI GCAATG 1 cut(s) 811
BsrI ACTGG 5 cut(s) 572, 1462, 1833, 1858, 1880
BssECI CCNNGG 2 cut(s) 294, 1336
BssT1I CCWWGG 2 cut(s) 294, 1336
Bst2UI CCWGG 1 cut(s) 1634
Bst4CI ACNGT 8 cut(s) 359, 797, 1269, 1533, 1651, 1676, 1687, 1769
Bst6I CTCTTC 2 cut(s) 24, 55
BstBAI YACGTR 1 cut(s) 591
BstBI TTCGAA 2 cut(s) 53, 1654
BstC8I GCNNGC 2 cut(s) 1385, 1644
BstDEI CTNAG 6 cut(s) 339, 387, 648, 844, 987, 1131
BstF5I GGATG 4 cut(s) 406, 430, 1009, 1266
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 2 cut(s) 571, 1155
BstMAI GTCTC 3 cut(s) 321, 335, 1617
BstMWI GCNNNNNNNGC 3 cut(s) 677, 1045, 1283
BstNI CCWGG 1 cut(s) 1634
BstNSI RCATGY 2 cut(s) 248, 1387
BstSCI CCNGG 2 cut(s) 1426, 1632
BstSFI CTRYAG 1 cut(s) 1647
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 78, 1261, 1264, 1284
BstX2I RGATCY 6 cut(s) 20, 194, 307, 1331, 1564, 1746
BstYI RGATCY 6 cut(s) 20, 194, 307, 1331, 1564, 1746
BsuI GTATCC 3 cut(s) 292, 367, 1473
BsuRI GGCC 3 cut(s) 39, 615, 1208
BtgZI GCGATG 2 cut(s) 195, 581
BtsCI GGATG 4 cut(s) 406, 430, 1009, 1266
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 3 cut(s) 364, 894, 1873
BtuMI TCGCGA 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 1385, 1644
CciI TCATGA 1 cut(s) 25
CfoI GCGC 2 cut(s) 571, 1155
Cfr13I GGNCC 1 cut(s) 1460
CseI GACGC 2 cut(s) 1136, 1599
Csp6I GTAC 4 cut(s) 168, 541, 582, 603
CviQI GTAC 4 cut(s) 168, 541, 582, 603
DdeI CTNAG 6 cut(s) 339, 387, 648, 844, 987, 1131
DriI GACNNNNNGTC 1 cut(s) 1678
EaeI YGGCCR 2 cut(s) 37, 1206
Eam1104I CTCTTC 2 cut(s) 24, 55
Eam1105I GACNNNNNGTC 1 cut(s) 1678
EarI CTCTTC 2 cut(s) 24, 55
Eco130I CCWWGG 2 cut(s) 294, 1336
Eco47I GGWCC 1 cut(s) 1460
Eco57I CTGAAG 1 cut(s) 1368
Eco88I CYCGRG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 1632
EcoT14I CCWWGG 2 cut(s) 294, 1336
EcoT22I ATGCAT 2 cut(s) 1385, 1587
ErhI CCWWGG 2 cut(s) 294, 1336
Esp3I CGTCTC 1 cut(s) 1617
FaqI GGGAC 3 cut(s) 623, 791, 905
FblI GTMKAC 1 cut(s) 1682
Fnu4HI GCNGC 7 cut(s) 37, 92, 95, 1206, 1250, 1278, 1298
FokI GGATG 4 cut(s) 413, 437, 1016, 1273
Fsp4HI GCNGC 7 cut(s) 37, 92, 95, 1206, 1250, 1278, 1298
GlaI GCGC 2 cut(s) 570, 1154
GluI GCNGC 7 cut(s) 37, 92, 95, 1206, 1250, 1278, 1298
GsaI CCCAGC 1 cut(s) 1286
HaeIII GGCC 3 cut(s) 39, 615, 1208
HapII CCGG 1 cut(s) 1427
HgaI GACGC 2 cut(s) 1136, 1599
HhaI GCGC 2 cut(s) 571, 1155
Hin6I GCGC 2 cut(s) 569, 1153
HinP1I GCGC 2 cut(s) 569, 1153
HincII GTYRAC 2 cut(s) 1126, 1529
HindII GTYRAC 2 cut(s) 1126, 1529
HpaII CCGG 1 cut(s) 1427
HphI GGTGA 7 cut(s) 245, 451, 722, 1211, 1388, 1442, 1454
Hpy166II GTNNAC 4 cut(s) 11, 1126, 1529, 1683
Hpy188I TCNGA 9 cut(s) 268, 448, 565, 1016, 1180, 1464, 1479, 1489, 1564
Hpy8I GTNNAC 4 cut(s) 11, 1126, 1529, 1683
HpyAV CCTTC 7 cut(s) 363, 485, 985, 1322, 1402, 1494, 1632
HpyCH4III ACNGT 8 cut(s) 359, 797, 1269, 1533, 1651, 1676, 1687, 1769
HpyCH4IV ACGT 1 cut(s) 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 677, 1045, 1283
HpyF3I CTNAG 6 cut(s) 339, 387, 648, 844, 987, 1131
HpySE526I ACGT 1 cut(s) 590
HspAI GCGC 2 cut(s) 569, 1153
LmnI GCTCC 4 cut(s) 652, 801, 877, 1294
Lsp1109I GCAGC 4 cut(s) 78, 1261, 1264, 1284
LweI GCATC 7 cut(s) 172, 556, 604, 766, 853, 1251, 1430
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 6 cut(s) 512, 791, 1453, 1495, 1783, 1811
MbiI CCGCTC 2 cut(s) 36, 886
MboII GAAGA 9 cut(s) 41, 42, 80, 169, 204, 302, 866, 1063, 1347
MflI RGATCY 6 cut(s) 20, 194, 307, 1331, 1564, 1746
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 6 cut(s) 457, 520, 1234, 1391, 1473, 1819
MlyI GAGTC 2 cut(s) 144, 836
MmeI TCCRAC 5 cut(s) 258, 607, 1055, 1487, 1774
Mph1103I ATGCAT 2 cut(s) 1385, 1587
MseI TTAA 3 cut(s) 471, 518, 1845
MspI CCGG 1 cut(s) 1427
MspR9I CCNGG 2 cut(s) 1428, 1634
Mva1269I GAATGC 5 cut(s) 205, 225, 1023, 1385, 1705
MvaI CCWGG 1 cut(s) 1634
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 677, 1045, 1283
NciI CCSGG 1 cut(s) 1428
NlaIV GGNNCC 3 cut(s) 351, 1333, 1748
NmuCI GTSAC 3 cut(s) 512, 791, 1811
NruI TCGCGA 1 cut(s) 180
NsiI ATGCAT 2 cut(s) 1385, 1587
NspI RCATGY 2 cut(s) 248, 1387
NspV TTCGAA 2 cut(s) 53, 1654
PaeI GCATGC 1 cut(s) 1387
PaeR7I CTCGAG 1 cut(s) 303
PagI TCATGA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 1297
PctI GAATGC 5 cut(s) 205, 225, 1023, 1385, 1705
PfoI TCCNGGA 1 cut(s) 1632
PkrI GCNGC 7 cut(s) 38, 93, 96, 1207, 1251, 1279, 1299
PleI GAGTC 2 cut(s) 144, 836
PpsI GAGTC 2 cut(s) 144, 836
Ppu21I YACGTR 1 cut(s) 591
PshBI ATTAAT 1 cut(s) 1845
PsiI TTATAA 4 cut(s) 462, 525, 1233, 1368
Psp6I CCWGG 1 cut(s) 1632
PspFI CCCAGC 1 cut(s) 1282
PspGI CCWGG 1 cut(s) 1632
PspN4I GGNNCC 3 cut(s) 351, 1333, 1748
PspPI GGNCC 1 cut(s) 1460
PsuI RGATCY 6 cut(s) 20, 194, 307, 1331, 1564, 1746
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 4 cut(s) 169, 542, 583, 604
RsaNI GTAC 4 cut(s) 168, 541, 582, 603
SaqAI TTAA 3 cut(s) 471, 518, 1845
SatI GCNGC 7 cut(s) 37, 92, 95, 1206, 1250, 1278, 1298
Sau96I GGNCC 1 cut(s) 1460
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 2 cut(s) 144, 836
ScrFI CCNGG 2 cut(s) 1428, 1634
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 7 cut(s) 172, 556, 604, 766, 853, 1251, 1430
SfcI CTRYAG 1 cut(s) 1647
Sfr274I CTCGAG 1 cut(s) 303
SfuI TTCGAA 2 cut(s) 53, 1654
SinI GGWCC 1 cut(s) 1460
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
SphI GCATGC 1 cut(s) 1387
Sse9I AATT 6 cut(s) 457, 520, 1234, 1391, 1473, 1819
SsiI CCGC 6 cut(s) 36, 95, 185, 488, 886, 1205
StyD4I CCNGG 2 cut(s) 1426, 1632
StyI CCWWGG 2 cut(s) 294, 1336
TaaI ACNGT 8 cut(s) 359, 797, 1269, 1533, 1651, 1676, 1687, 1769
TaiI ACGT 1 cut(s) 593
TaqI TCGA 7 cut(s) 53, 148, 217, 304, 1097, 1654, 1734
TasI AATT 6 cut(s) 457, 520, 1234, 1391, 1473, 1819
TatI WGTACW 2 cut(s) 581, 602
TauI GCSGC 3 cut(s) 39, 97, 1208
Tru1I TTAA 3 cut(s) 471, 518, 1845
Tru9I TTAA 3 cut(s) 471, 518, 1845
TscAI CASTG 3 cut(s) 364, 901, 1880
TseFI GTSAC 3 cut(s) 512, 791, 1811
TseI GCWGC 4 cut(s) 91, 1249, 1277, 1297
Tsp45I GTSAC 3 cut(s) 512, 791, 1811
TspDTI ATGAA 5 cut(s) 42, 81, 1044, 1341, 1431
TspRI CASTG 3 cut(s) 364, 901, 1880
VneI GTGCAC 1 cut(s) 9
VpaK11BI GGWCC 1 cut(s) 1460
VspI ATTAAT 1 cut(s) 1845
XapI RAATTY 1 cut(s) 1473
XceI RCATGY 2 cut(s) 248, 1387
XcmI CCANNNNNNNNNTGG 2 cut(s) 623, 1520
XhoI CTCGAG 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 1682
ZrmI AGTACT 1 cut(s) 604
Zsp2I ATGCAT 2 cut(s) 1385, 1587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.