MD15G1149300.v1.1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011807
Physical Location & Seq
Reverse (-)
11037213 .. 11037887
675 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1149300.v1.1.491

Sequence Viewer

Length: 675 bp
ATGGACGATACGTTAGACGCTGCGTTTTGGCTCCCGACCCAGATTCTCAACGACAACGACGCACCGGCCATGGAGCTCAACTCAAAGACCAAGAAAAGTGGCGGGTATGGGTTTGACATTGATGCTCCGAAAGCTCTGTTCCCGTTTGAGTTTCCTTACGGCAGCGCTTTTGGGGTTTCGTCGGATTTTAGTTCGCCGGTCGAGTCGAGCGAGACTGAGAGCGACGAGGAAGACTACCTCGTTGGGTTGACCAGCCAAATGGCTCGCTCCACTCTCGACGACGAGTTCAAATACTCCGACTCTGTTTTCGCATTCGAGAAGCCAAAGGGTTGGGTCGCTTCTGGTTTTCCCCAATCAACTCTCTACGCAGTCGGGAGCGGTTGCGGACAGGTCTCAAGCCGTGGAAGCCCTAACGCCCAGTCGCCGCTGGTCACCTGGGATCTGCTGCATGCGGCTGCAGAGGAAGTAGCCAAGATGCACATCAACCAAAGCAGAGGCCTCCTGGGTCATCCAAGAAAGCCTTCCCCAATTCGAACCCTGCAAGAAGCAAGTGCCTCAGCAGTAACCCAATTGACGACTGCTGGCGCTGCGAGGACTGGAGCAACAACTGCCAAAGGCTCGCCGATTGCGGCATTGGGTTCGGCATGGACGCCTTGGGGGGCAAAGGGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

23.63

Weight (kDa)

4.77

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54000 AT3G54000 AT3G54000
fragaria_vesca FvH4_6g12650
malus_domestica MD04G1140200.v1.1 MD12G1155400.v1.1 MD15G1149300.v1.1
prunus_persica Prupe.6G265300_v2.0.a1
pyrus_communis pycom04g12780 pycom12g14750
rosa_chinensis RchiOBHm_Chr3g0464501
rosa_laevigata RLG00000024691
rosa_multiflora Rmu_sc0003074.1_g000005
rosa_roxburghii Rroxscaffold_6G00415610
rosa_rugosa Rorug03G0072700
rosa_samantha Rh3BG134900 Rh3CG137400 Rh3DG136200
rosa_wichuraiana Rw3G011030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 378
AciI CCGC 6 cut(s) 102, 378, 384, 425, 452, 629
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 650
AfeI AGCGCT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 2 cut(s) 434, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 2 cut(s) 76, 134
AluI AGCT 2 cut(s) 76, 134
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 206, 397
AlwI GGATC 1 cut(s) 447
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 3 cut(s) 66, 496, 669
ApeKI GCWGC 5 cut(s) 20, 162, 445, 455, 587
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 2 cut(s) 167, 587
AspS9I GGNCC 1 cut(s) 669
AsuHPI GGTGA 1 cut(s) 424
AsuII TTCGAA 1 cut(s) 532
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 556
BbvI GCAGC 5 cut(s) 7, 174, 432, 442, 574
BceAI ACGGC 2 cut(s) 175, 384
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 2 cut(s) 436, 503
BcoDI GTCTC 2 cut(s) 206, 397
BfmI CTRYAG 1 cut(s) 456
BfoI RGCGCY 2 cut(s) 168, 588
BisI GCNGC 8 cut(s) 21, 163, 425, 446, 453, 456, 588, 630
BlsI GCNGC 8 cut(s) 22, 164, 426, 447, 454, 457, 589, 631
Bme1390I CCNGG 2 cut(s) 436, 503
BmgT120I GGNCC 1 cut(s) 669
BmiI GGNNCC 2 cut(s) 32, 670
BmrFI CCNGG 2 cut(s) 436, 503
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 2 cut(s) 112, 465
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 556
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 650
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 5 cut(s) 69, 400, 435, 502, 653
Bse118I RCCGGY 2 cut(s) 64, 196
Bse1I ACTGG 2 cut(s) 418, 601
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 2 cut(s) 436, 503
BseDI CCNNGG 5 cut(s) 69, 400, 435, 502, 653
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 479
BseMII CTCAG 2 cut(s) 207, 570
BseNI ACTGG 2 cut(s) 418, 601
BseXI GCAGC 5 cut(s) 7, 174, 432, 442, 574
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 68, 498, 671
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 65, 197
BsmAI GTCTC 2 cut(s) 206, 397
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 3 cut(s) 68, 498, 671
Bso31I GGTCTC 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 439
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 6 cut(s) 102, 378, 384, 425, 452, 629
BspANI GGCC 3 cut(s) 68, 498, 671
BspCNI CTCAG 2 cut(s) 208, 569
BspLI GGNNCC 2 cut(s) 32, 670
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 447
BspT104I TTCGAA 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 378
BsrFI RCCGGY 2 cut(s) 64, 196
BsrI ACTGG 2 cut(s) 418, 601
BssAI RCCGGY 2 cut(s) 64, 196
BssECI CCNNGG 5 cut(s) 69, 400, 435, 502, 653
BssMI GATC 1 cut(s) 439
BssNI GRCGYC 1 cut(s) 650
BssT1I CCWWGG 2 cut(s) 69, 653
Bst2UI CCWGG 2 cut(s) 436, 503
BstACI GRCGYC 1 cut(s) 650
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 265, 450, 583, 620
BstDEI CTNAG 2 cut(s) 216, 556
BstDSI CCRYGG 2 cut(s) 69, 400
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 1 cut(s) 508
BstH2I RGCGCY 2 cut(s) 168, 588
BstHHI GCGC 2 cut(s) 167, 587
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 2 cut(s) 206, 397
BstMBI GATC 1 cut(s) 439
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 5 cut(s) 131, 405, 587, 608, 668
BstNI CCWGG 2 cut(s) 436, 503
BstNSI RCATGY 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 434, 501
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 5 cut(s) 7, 174, 432, 442, 574
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 2 cut(s) 259, 330
BstYI RGATCY 1 cut(s) 439
BsuRI GGCC 3 cut(s) 68, 498, 671
BtgI CCRYGG 2 cut(s) 69, 400
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 4 cut(s) 265, 450, 583, 620
CfoI GCGC 2 cut(s) 167, 587
Cfr10I RCCGGY 2 cut(s) 64, 196
Cfr13I GGNCC 1 cut(s) 669
CseI GACGC 3 cut(s) 26, 68, 658
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 70, 449, 645
DdeI CTNAG 2 cut(s) 216, 556
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 69, 653
Eco147I AGGCCT 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 397
Eco47III AGCGCT 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 669
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 434, 501
EcoT14I CCWWGG 2 cut(s) 69, 653
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 2 cut(s) 69, 653
FaeI CATG 3 cut(s) 73, 452, 648
FaiI YATR 4 cut(s) 71, 108, 450, 646
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FatI CATG 3 cut(s) 69, 448, 644
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 8 cut(s) 21, 163, 425, 446, 453, 456, 588, 630
FokI GGATG 1 cut(s) 495
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 8 cut(s) 21, 163, 425, 446, 453, 456, 588, 630
GlaI GCGC 2 cut(s) 166, 586
GluI GCNGC 8 cut(s) 21, 163, 425, 446, 453, 456, 588, 630
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 2 cut(s) 168, 588
HaeIII GGCC 3 cut(s) 68, 498, 671
HapII CCGG 2 cut(s) 65, 197
HgaI GACGC 3 cut(s) 26, 68, 658
HhaI GCGC 2 cut(s) 167, 587
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 3 cut(s) 73, 452, 648
Hin6I GCGC 2 cut(s) 165, 585
HinP1I GCGC 2 cut(s) 165, 585
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 3 cut(s) 43, 203, 299
HpaII CCGG 2 cut(s) 65, 197
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 129, 184, 298
Hpy188III TCNNGA 4 cut(s) 34, 275, 316, 373
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 5 cut(s) 62, 184, 227, 281, 284
HpyAV CCTTC 1 cut(s) 531
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 448, 458, 478, 541
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 405, 587, 608, 668
HpyF3I CTNAG 2 cut(s) 216, 556
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 3 cut(s) 73, 452, 648
HspAI GCGC 2 cut(s) 165, 585
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 6 cut(s) 36, 73, 130, 272, 375, 599
Lsp1109I GCAGC 5 cut(s) 7, 174, 432, 442, 574
LweI GCATC 2 cut(s) 112, 465
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 430, 562
MalI GATC 1 cut(s) 441
MbiI CCGCTC 1 cut(s) 378
MboI GATC 1 cut(s) 439
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 528, 569
MlyI GAGTC 2 cut(s) 212, 293
MmeI TCCRAC 2 cut(s) 162, 321
MnlI CCTC 7 cut(s) 220, 248, 454, 488, 509, 565, 585
MroXI GAANNNNTTC 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 2 cut(s) 65, 197
MspR9I CCNGG 2 cut(s) 436, 503
MunI CAATTG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 2 cut(s) 436, 503
MwoI GCNNNNNNNGC 5 cut(s) 131, 405, 587, 608, 668
NcoI CCATGG 1 cut(s) 69
NdeII GATC 1 cut(s) 439
NlaIII CATG 3 cut(s) 73, 452, 648
NlaIV GGNNCC 2 cut(s) 32, 670
NmuCI GTSAC 1 cut(s) 430
NspI RCATGY 1 cut(s) 452
NspV TTCGAA 1 cut(s) 532
PaeI GCATGC 1 cut(s) 452
PceI AGGCCT 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 8 cut(s) 22, 164, 426, 447, 454, 457, 589, 631
PleI GAGTC 2 cut(s) 211, 293
PpsI GAGTC 2 cut(s) 211, 293
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 434, 501
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 434, 501
PspN4I GGNNCC 2 cut(s) 32, 670
PspPI GGNCC 1 cut(s) 669
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 439
SacI GAGCTC 1 cut(s) 78
SatI GCNGC 8 cut(s) 21, 163, 425, 446, 453, 456, 588, 630
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 669
SchI GAGTC 2 cut(s) 212, 293
ScrFI CCNGG 2 cut(s) 436, 503
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 14, 78, 136, 240, 393, 437
SfaNI GCATC 2 cut(s) 112, 465
SfcI CTRYAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 452
Sse9I AATT 2 cut(s) 528, 569
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 6 cut(s) 102, 378, 384, 425, 452, 629
SstI GAGCTC 1 cut(s) 78
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 434, 501
StyI CCWWGG 2 cut(s) 69, 653
TaiI ACGT 1 cut(s) 14
TaqI TCGA 5 cut(s) 201, 206, 276, 315, 532
TasI AATT 2 cut(s) 528, 569
TauI GCSGC 3 cut(s) 427, 455, 632
TfiI GAWTC 1 cut(s) 43
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 5 cut(s) 20, 162, 445, 455, 587
Tsp45I GTSAC 1 cut(s) 430
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.