Prupe.6G265300_v2.0.a1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011807
Physical Location & Seq
Forward (+)
25400742 .. 25403589
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G265300.1

Sequence Viewer

Length: 1275 bp
ATGTCTGACATGTTAGACGACCCCGCCTTTTGGCTCCCAACCCAGATTCTCGACGACGACGACCTACCCGCCATGGACCTCGGTTCCAAAACCAACTCCAAGACCCACCACAAGAGCTTCGGGCTCGGCTTTGACGTTGATGCTTCGAAAGCTCTGTTTCCGTTCGACTTTCCTTATGGCGGGTACGGGGCTTTCGGAGTTTCGTCGGATCTCAGCTCGCCGGTCGAGTCTGTGGTGGGCTCCAGCGAGACGGAGAGTGACGAGGAAGACTACCTCGCCGAGTTGACTCGCCAAATGGCTCGCTCGACGTTCGAGAAGGAGTTGAAGCACTCTGACGCTGCTTTCGGCTCTGACAACTCAAAGAGCTGGGTCGTTTCCGGTTCGCCCCAATCGACGCTGTGCCCAGCTGGGAGCGGCTGTGGCTGTGGGCTAGGCTCGAGCCGTGGAAGCCCAAACGCCCACTCGCCGCCGGCCACTTGGGATCTGCTGCATGCGGCTGCAGGGGAGGTAGCGAAGATGCACATCGACCATAGCAGAGGCTTCTTGGGACCTCCAAGAAAGCCCTCCCCACCAGTTCCCGCCGCCTCTCTGAGCAGCAACCCCAACAACCCAGATGTTGGTTTTTACTTTCACCAGCAGTCGCTTTCCCACAAGCACTTGCAAGCCACACAGTTTCAGCGGTTGAGGCAGCAGCAAATGTTGAAGGAACAGAGCTCTGGGGTTTGGGCAGCGCAGCCTCGATACCCACAGCAGCAGACTCAGTCCCAGGCTCAGGCTCAGTCTCACCCAATGGTCCAGAGCAGAGTGAGAAGCAACGCTCTCAACACTCGGCCTCTGGGTTTGTCGCCATCTGCATGGCCTCCTCTGCAACAAGCCCAGCAGCAACAACAGTACCAGAAAAATGGGTCTGGCATGAGAGCTGTTTTCCTTGGAACCCAAAACGCTGGTGCCAAAAGGGAGTGCGCTGGAACTGGCGTCTTCTTACCTCGCCAAATCGGCACCCAATCTGAAACGCGCAAGAAGACAGGTTGCTCGACAGTTCTCGTTCCAGCTAGAGTTGTGCAGGCACTGAAGCTGAACATTGATGATATGTGCGCACCTCAACCGCCCCACCTTCAGCGTCGTTTCAATGCAAGCTACAACCCTGAACACGATGTTGCTCTGAGGCTTCGAAGTAACAACGGCGCCATTTCTCAGCAGAGACGCAATGTTATTAGGCCACAGCCGCCACAAGTGAGCAATGAGATTAGGCTCCCCCAGGAGTGGACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

46.35

Weight (kDa)

8.47

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54000 AT3G54000 AT3G54000
fragaria_vesca FvH4_6g12650
malus_domestica MD04G1140200.v1.1 MD12G1155400.v1.1 MD15G1149300.v1.1
prunus_persica Prupe.6G265300_v2.0.a1
pyrus_communis pycom04g12780 pycom12g14750
rosa_chinensis RchiOBHm_Chr3g0464501
rosa_laevigata RLG00000024691
rosa_multiflora Rmu_sc0003074.1_g000005
rosa_roxburghii Rroxscaffold_6G00415610
rosa_rugosa Rorug03G0072700
rosa_samantha Rh3BG134900 Rh3CG137400 Rh3DG136200
rosa_wichuraiana Rw3G011030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1096
AccB1I GGYRCC 3 cut(s) 947, 998, 1184
AccB7I CCANNNNNTGG 1 cut(s) 617
AccBSI CCGCTC 1 cut(s) 414
AccII CGCG 1 cut(s) 1015
AclWI GGATC 2 cut(s) 216, 489
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 2 cut(s) 1091, 1100
AcyI GRCGYC 2 cut(s) 975, 1185
AfaI GTAC 2 cut(s) 185, 893
AfiI CCNNNNNNNGG 5 cut(s) 30, 179, 617, 772, 1263
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 3 cut(s) 325, 703, 1129
AjnI CCWGG 2 cut(s) 765, 1257
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 3 cut(s) 242, 786, 1195
AlwI GGATC 2 cut(s) 216, 489
AlwNI CAGNNNCTG 1 cut(s) 1069
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 4 cut(s) 471, 830, 857, 1217
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 5 cut(s) 733, 965, 1017, 1097, 1187
AspS9I GGNCC 3 cut(s) 76, 548, 793
AsuHPI GGTGA 2 cut(s) 623, 776
AsuII TTCGAA 2 cut(s) 146, 1171
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 3 cut(s) 76, 548, 793
BaeGI GKGCMC 1 cut(s) 404
BaeI ACNNNNGTAYC 2 cut(s) 875, 908
BanI GGYRCC 3 cut(s) 947, 998, 1184
BanII GRGCYC 3 cut(s) 126, 242, 716
BbsI GAAGAC 3 cut(s) 273, 970, 1028
Bbv12I GWGCWC 1 cut(s) 716
BccI CCATC 1 cut(s) 856
BceAI ACGGC 2 cut(s) 426, 1198
BciT130I CCWGG 2 cut(s) 767, 1259
BcoDI GTCTC 3 cut(s) 242, 786, 1195
BfaI CTAG 2 cut(s) 431, 1053
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 1188
BglI GCCNNNNNGGC 1 cut(s) 996
Bme1390I CCNGG 2 cut(s) 767, 1259
Bme18I GGWCC 3 cut(s) 76, 548, 793
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 76, 548, 793
BmiI GGNNCC 9 cut(s) 35, 85, 241, 549, 934, 949, 1000, 1186, 1253
BmrFI CCNGG 2 cut(s) 767, 1259
BmsI GCATC 2 cut(s) 130, 507
BpiI GAAGAC 3 cut(s) 273, 970, 1028
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 771
Bpu14I TTCGAA 2 cut(s) 146, 1171
BsaBI GATNNNNATC 1 cut(s) 521
BsaHI GRCGYC 2 cut(s) 975, 1185
BsaJI CCNNGG 6 cut(s) 72, 79, 442, 765, 928, 1257
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 179, 617, 772, 1263
Bse118I RCCGGY 2 cut(s) 220, 469
Bse1I ACTGG 2 cut(s) 572, 976
Bse3DI GCAATG 2 cut(s) 1213, 1246
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 2 cut(s) 767, 1259
BseDI CCNNGG 6 cut(s) 72, 79, 442, 765, 928, 1257
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 5 cut(s) 30, 179, 617, 772, 1263
BseMI GCAATG 2 cut(s) 1213, 1246
BseMII CTCAG 7 cut(s) 226, 581, 773, 785, 791, 1154, 1208
BseNI ACTGG 2 cut(s) 572, 976
BseRI GAGGAG 1 cut(s) 852
BseSI GKGCMC 1 cut(s) 404
BseYI CCCAGC 4 cut(s) 366, 403, 407, 876
BsgI GTGCAG 1 cut(s) 1082
Bsh1236I CGCG 1 cut(s) 1015
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 4 cut(s) 473, 832, 859, 1219
BshNI GGYRCC 3 cut(s) 947, 998, 1184
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 716
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 3 cut(s) 221, 378, 470
BslFI GGGAC 2 cut(s) 561, 748
BslI CCNNNNNNNGG 5 cut(s) 30, 179, 617, 772, 1263
BsmAI GTCTC 3 cut(s) 242, 786, 1195
BsmBI CGTCTC 2 cut(s) 242, 1195
BsmFI GGGAC 2 cut(s) 561, 748
BsnI GGCC 4 cut(s) 473, 832, 859, 1219
BsoBI CYCGRG 1 cut(s) 436
Bsp119I TTCGAA 2 cut(s) 146, 1171
Bsp1286I GDGCHC 4 cut(s) 126, 242, 404, 716
Bsp143I GATC 2 cut(s) 208, 481
Bsp19I CCATGG 1 cut(s) 72
BspANI GGCC 4 cut(s) 473, 832, 859, 1219
BspCNI CTCAG 7 cut(s) 225, 582, 772, 784, 790, 1155, 1207
BspFNI CGCG 1 cut(s) 1015
BspLI GGNNCC 9 cut(s) 35, 85, 241, 549, 934, 949, 1000, 1186, 1253
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 216, 489
BspT104I TTCGAA 2 cut(s) 146, 1171
BspT107I GGYRCC 3 cut(s) 947, 998, 1184
BsrBI CCGCTC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 1213, 1246
BsrFI RCCGGY 2 cut(s) 220, 469
BsrI ACTGG 2 cut(s) 572, 976
BssAI RCCGGY 2 cut(s) 220, 469
BssECI CCNNGG 6 cut(s) 72, 79, 442, 765, 928, 1257
BssMI GATC 2 cut(s) 208, 481
BssNI GRCGYC 2 cut(s) 975, 1185
BssT1I CCWWGG 2 cut(s) 72, 928
Bst2UI CCWGG 2 cut(s) 767, 1259
Bst4CI ACNGT 3 cut(s) 672, 891, 1039
BstACI GRCGYC 2 cut(s) 975, 1185
BstBI TTCGAA 2 cut(s) 146, 1171
BstC8I GCNNGC 7 cut(s) 218, 301, 471, 492, 663, 1065, 1135
BstDEI CTNAG 7 cut(s) 212, 590, 759, 771, 777, 1163, 1194
BstDSI CCRYGG 2 cut(s) 72, 442
BstFNI CGCG 1 cut(s) 1015
BstH2I RGCGCY 1 cut(s) 1188
BstHHI GCGC 5 cut(s) 733, 965, 1017, 1097, 1187
BstKTI GATC 2 cut(s) 211, 484
BstMAI GTCTC 3 cut(s) 242, 786, 1195
BstMBI GATC 2 cut(s) 208, 481
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 7 cut(s) 149, 420, 447, 685, 865, 996, 1225
BstNI CCWGG 2 cut(s) 767, 1259
BstNSI RCATGY 2 cut(s) 13, 494
BstSCI CCNGG 2 cut(s) 765, 1257
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 404
BstUI CGCG 1 cut(s) 1015
BstV2I GAAGAC 3 cut(s) 273, 970, 1028
BstX2I RGATCY 2 cut(s) 208, 481
BstXI CCANNNNNNTGG 3 cut(s) 855, 902, 944
BstYI RGATCY 2 cut(s) 208, 481
BsuRI GGCC 4 cut(s) 473, 832, 859, 1219
BtgI CCRYGG 2 cut(s) 72, 442
BtsIMutI CAGTG 1 cut(s) 1067
Cac8I GCNNGC 7 cut(s) 218, 301, 471, 492, 663, 1065, 1135
CaiI CAGNNNCTG 1 cut(s) 1069
CfoI GCGC 5 cut(s) 733, 965, 1017, 1097, 1187
Cfr10I RCCGGY 2 cut(s) 220, 469
Cfr13I GGNCC 3 cut(s) 76, 548, 793
CseI GACGC 5 cut(s) 344, 403, 964, 1109, 1212
Csp6I GTAC 2 cut(s) 184, 892
CviAII CATG 5 cut(s) 10, 73, 491, 855, 913
CviQI GTAC 2 cut(s) 184, 892
DdeI CTNAG 7 cut(s) 212, 590, 759, 771, 777, 1163, 1194
DinI GGCGCC 1 cut(s) 1186
DpnI GATC 2 cut(s) 210, 483
DpnII GATC 2 cut(s) 208, 481
EaeI YGGCCR 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 714
Eco130I CCWWGG 2 cut(s) 72, 928
Eco24I GRGCYC 3 cut(s) 126, 242, 716
Eco47I GGWCC 3 cut(s) 76, 548, 793
Eco53kI GAGCTC 1 cut(s) 714
Eco57I CTGAAG 2 cut(s) 1091, 1100
Eco88I CYCGRG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 714
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 765, 1257
EcoT14I CCWWGG 2 cut(s) 72, 928
EcoT38I GRGCYC 3 cut(s) 126, 242, 716
EgeI GGCGCC 1 cut(s) 1186
EheI GGCGCC 1 cut(s) 1186
ErhI CCWWGG 2 cut(s) 72, 928
Esp3I CGTCTC 2 cut(s) 242, 1195
FaeI CATG 5 cut(s) 13, 76, 494, 858, 916
FaiI YATR 8 cut(s) 11, 74, 177, 492, 531, 856, 914, 1091
FaqI GGGAC 2 cut(s) 561, 748
FatI CATG 5 cut(s) 9, 72, 490, 854, 912
FauI CCCGC 4 cut(s) 31, 76, 173, 586
FriOI GRGCYC 3 cut(s) 126, 242, 716
FspAI RTGCGCAY 1 cut(s) 1096
FspBI CTAG 2 cut(s) 431, 1053
FspI TGCGCA 1 cut(s) 1096
GlaI GCGC 5 cut(s) 732, 964, 1016, 1096, 1186
GsaI CCCAGC 4 cut(s) 370, 407, 411, 880
GsuI CTGGAG 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 1188
HaeIII GGCC 4 cut(s) 473, 832, 859, 1219
HapII CCGG 3 cut(s) 221, 378, 470
HgaI GACGC 5 cut(s) 344, 403, 964, 1109, 1212
HhaI GCGC 5 cut(s) 733, 965, 1017, 1097, 1187
Hin1I GRCGYC 2 cut(s) 975, 1185
Hin1II CATG 5 cut(s) 13, 76, 494, 858, 916
Hin6I GCGC 5 cut(s) 731, 963, 1015, 1095, 1185
HinP1I GCGC 5 cut(s) 731, 963, 1015, 1095, 1185
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 4 cut(s) 46, 227, 286, 757
HpaII CCGG 3 cut(s) 221, 378, 470
HphI GGTGA 2 cut(s) 623, 776
Hpy166II GTNNAC 2 cut(s) 285, 1266
Hpy188I TCNGA 8 cut(s) 7, 197, 208, 334, 352, 591, 1009, 1164
Hpy188III TCNNGA 3 cut(s) 50, 313, 796
Hpy8I GTNNAC 2 cut(s) 285, 1266
Hpy99I CGWCG 7 cut(s) 56, 59, 62, 208, 310, 397, 1125
HpyAV CCTTC 3 cut(s) 310, 697, 1124
HpyCH4III ACNGT 3 cut(s) 672, 891, 1039
HpyCH4IV ACGT 2 cut(s) 135, 308
HpyCH4V TGCA 8 cut(s) 490, 500, 520, 661, 854, 868, 1063, 1133
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 420, 447, 685, 865, 996, 1225
HpyF3I CTNAG 7 cut(s) 212, 590, 759, 771, 777, 1163, 1194
HpySE526I ACGT 2 cut(s) 135, 308
Hsp92I GRCGYC 2 cut(s) 975, 1185
Hsp92II CATG 5 cut(s) 13, 76, 494, 858, 916
HspAI GCGC 5 cut(s) 731, 963, 1015, 1095, 1185
KasI GGCGCC 1 cut(s) 1184
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 208, 481
LmnI GCTCC 4 cut(s) 39, 245, 411, 1257
LweI GCATC 2 cut(s) 130, 507
MaeI CTAG 2 cut(s) 431, 1053
MaeII ACGT 2 cut(s) 135, 308
MaeIII GTNAC 2 cut(s) 257, 1175
MalI GATC 2 cut(s) 210, 483
MbiI CCGCTC 1 cut(s) 414
MboI GATC 2 cut(s) 208, 481
MboII GAAGA 4 cut(s) 278, 526, 970, 1033
MflI RGATCY 2 cut(s) 208, 481
MhlI GDGCHC 4 cut(s) 126, 242, 404, 716
Mly113I GGCGCC 1 cut(s) 1185
MlyI GAGTC 3 cut(s) 236, 280, 751
MmeI TCCRAC 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 469
MslI CAYNNNNRTG 1 cut(s) 853
MspA1I CMGCKG 2 cut(s) 407, 679
MspI CCGG 3 cut(s) 221, 378, 470
MspR9I CCNGG 2 cut(s) 767, 1259
MvaI CCWGG 2 cut(s) 767, 1259
MvnI CGCG 1 cut(s) 1015
MwoI GCNNNNNNNGC 7 cut(s) 149, 420, 447, 685, 865, 996, 1225
NaeI GCCGGC 1 cut(s) 471
NarI GGCGCC 1 cut(s) 1185
NcoI CCATGG 1 cut(s) 72
NdeII GATC 2 cut(s) 208, 481
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 5 cut(s) 13, 76, 494, 858, 916
NlaIV GGNNCC 9 cut(s) 35, 85, 241, 549, 934, 949, 1000, 1186, 1253
NmeAIII GCCGAG 3 cut(s) 105, 304, 808
NmuCI GTSAC 1 cut(s) 257
NsbI TGCGCA 1 cut(s) 1096
NspI RCATGY 2 cut(s) 13, 494
NspV TTCGAA 2 cut(s) 146, 1171
PaeI GCATGC 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 436
PciI ACATGT 1 cut(s) 9
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 132, 389
PdiI GCCGGC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 46
PflFI GACNNNGTC 1 cut(s) 760
PflMI CCANNNNNTGG 1 cut(s) 617
PleI GAGTC 3 cut(s) 235, 280, 751
PluTI GGCGCC 1 cut(s) 1188
PpsI GAGTC 3 cut(s) 235, 280, 751
PpuMI RGGWCCY 1 cut(s) 548
PscI ACATGT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 765, 1257
PspFI CCCAGC 4 cut(s) 366, 403, 407, 876
PspGI CCWGG 2 cut(s) 765, 1257
PspN4I GGNNCC 9 cut(s) 35, 85, 241, 549, 934, 949, 1000, 1186, 1253
PspPI GGNCC 3 cut(s) 76, 548, 793
PspPPI RGGWCCY 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 436
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 1069
PsuI RGATCY 2 cut(s) 208, 481
PsyI GACNNNGTC 1 cut(s) 760
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 2 cut(s) 185, 893
RsaNI GTAC 2 cut(s) 184, 892
RseI CAYNNNNRTG 1 cut(s) 853
SacI GAGCTC 1 cut(s) 716
Sau3AI GATC 2 cut(s) 208, 481
Sau96I GGNCC 3 cut(s) 76, 548, 793
SchI GAGTC 3 cut(s) 236, 280, 751
ScrFI CCNGG 2 cut(s) 767, 1259
SduI GDGCHC 4 cut(s) 126, 242, 404, 716
SfaNI GCATC 2 cut(s) 130, 507
SfcI CTRYAG 1 cut(s) 498
SfoI GGCGCC 1 cut(s) 1186
Sfr274I CTCGAG 1 cut(s) 436
SfuI TTCGAA 2 cut(s) 146, 1171
SinI GGWCC 3 cut(s) 76, 548, 793
SlaI CTCGAG 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SphI GCATGC 1 cut(s) 494
SspDI GGCGCC 1 cut(s) 1184
SspMI CTAG 2 cut(s) 431, 1053
SstI GAGCTC 1 cut(s) 716
StyD4I CCNGG 2 cut(s) 765, 1257
StyI CCWWGG 2 cut(s) 72, 928
TaaI ACNGT 3 cut(s) 672, 891, 1039
TaiI ACGT 2 cut(s) 138, 311
TauI GCSGC 5 cut(s) 417, 469, 497, 584, 1228
TfiI GAWTC 1 cut(s) 46
TscAI CASTG 1 cut(s) 1074
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspGWI ACGGA 2 cut(s) 150, 266
TspRI CASTG 1 cut(s) 1074
Tth111I GACNNNGTC 1 cut(s) 760
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 3 cut(s) 76, 548, 793
XceI RCATGY 2 cut(s) 13, 494
XhoI CTCGAG 1 cut(s) 436
XspI CTAG 2 cut(s) 431, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.