RLG00000024691

expressed protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38234087 .. 38235914
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024691

Sequence Viewer

Length: 1251 bp
ATGGCTGATGAGTTCGACGACGCCGCGTTTTGGTTACCTCAGGAGATTCTCACCTATTCCGACGACGAAATCAGTCCCAAGATTGACTCCGGGAGCCGGAAGATGAGCTCGTTTGGCTCTGACACTGACGCTGGCTCCAAGACTGCTCTGTTTCCCTTCGAGTTTCCCTACTCCGGGTTTGGGGCTTTCGGTGTCTCCTCCGATTTCAGCTCGCCGGTGGAGTCCAGCGAGACTGAGAGCGACGAGGAAGAGTATCTCGCTGGGTTGACTCGCCAACTGGCTCAGTCCACTCTTGATGACGAGTACAAGCGCTACGACTCGGTTCTTGGCTCCAAGAACAACTCAAAGCCGTGGGTGTCGTCTGGTTCACCGCAATCGACGCTGTGCGCGGCCGGGAATGGTTGCGGCTGCGGCGGACAAGGCTCGAGCCGGGGAAGCCCGAACGCTCAGTCGCCGCCAGCCACTTGGGATCTGCTACATGCGGCTGCAGGGGCAGTGGCTAAGATGCGCATCCAGGAAGAAGCTTTGCGTTTCGACCATAAAAGCAGAGGCATCTTGGGTGCTCCGGGTGCTCCAAGGGAGCCCTCTCCAGTCACTGTCCCTGATTTCGGGTACTACCTCCAGCACCAAGAACAGTCGCTTTCCCAGAAGCACTTGCAGTTTGAGCGGTTGAGACAGCAACAGATTCTGAAGAACAACATCTCGGCGGTGCTTGCTCAGTCTCAGGCGAACGGAAGATTCCAACACCAACACCAGCGGGCTCAGTCCCATCCGATGGTCCAGAACCGAGTCAGGAACACCAACAACGGACCTCTGGGTCTTTCGCCGTCGGCTTGGCCTCCTCTGCAACAAGCTCAGCGGCAACAGTTTCAGCCCAATGGGCCTGGATTCCAAGGTGTTCTTATGGGAGCCAAAAAGGAGTCTACTGGTACTGGTGTGTTTTTGCCCCGCCAAATCGGAACTCCATCTGAATATCCTCGCGGCAAGAAGCAACAACCCAAACAAGCTTGCCCAACGGTTTTCGTCCCAGCTAAAGTAGTCCATGCATTGAAGTTGAACGTTGAAGAAATGCGCGTACAATCACAGCCTCAAGTCCATAACCGTTTCAATGGAAGAAACAATCCTGACTATGAACTTGCTCTTCGGCTTCGGAATAACAGCATCGCCATAGCTCAGCAGAATCGCAGGATGATGAGGCCACAGGCACCAGTGAACCATGAGATTAGGCTTCCCCAGGAGTGGACTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

45.96

Weight (kDa)

8.57

Isoelectric Point (pI)

66.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011807)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 816
Acc16I TGCGCA 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 1204
AccB7I CCANNNNNTGG 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 923
AccII CGCG 4 cut(s) 26, 389, 981, 1074
AclI AACGTT 1 cut(s) 1059
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 4 cut(s) 305, 614, 931, 1077
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 608, 775, 1239
AgsI TTSAA 4 cut(s) 1051, 1057, 1064, 1108
AjnI CCWGG 3 cut(s) 513, 883, 1233
AluBI AGCT 7 cut(s) 108, 210, 524, 854, 1007, 1031, 1172
AluI AGCT 7 cut(s) 108, 210, 524, 854, 1007, 1031, 1172
Alw21I GWGCWC 3 cut(s) 110, 565, 574
Alw26I GTCTC 4 cut(s) 199, 224, 667, 726
AlwI GGATC 1 cut(s) 477
AlwNI CAGNNNCTG 2 cut(s) 596, 688
Ama87I CYCGRG 1 cut(s) 424
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 4 cut(s) 390, 836, 881, 1196
ApeKI GCWGC 2 cut(s) 408, 485
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspLEI GCGC 4 cut(s) 312, 389, 510, 1074
AspS9I GGNCC 3 cut(s) 778, 809, 881
AsuC2I CCSGG 5 cut(s) 91, 175, 394, 431, 567
AsuHPI GGTGA 2 cut(s) 43, 360
AvaI CYCGRG 1 cut(s) 424
AvaII GGWCC 2 cut(s) 778, 809
AxyI CCTNAGG 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BanI GGYRCC 1 cut(s) 1204
BanII GRGCYC 3 cut(s) 110, 585, 763
Bbv12I GWGCWC 3 cut(s) 110, 565, 574
BbvI GCAGC 2 cut(s) 395, 472
BccI CCATC 3 cut(s) 769, 777, 973
BceAI ACGGC 2 cut(s) 334, 811
BciT130I CCWGG 3 cut(s) 515, 885, 1235
BcnI CCSGG 5 cut(s) 91, 175, 394, 431, 567
BcoDI GTCTC 4 cut(s) 199, 224, 667, 726
BfaI CTAG 1 cut(s) 1249
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 880
BlpI GCTNAGC 2 cut(s) 855, 1173
Bme1390I CCNGG 8 cut(s) 91, 175, 394, 431, 515, 567, 885, 1235
Bme18I GGWCC 2 cut(s) 778, 809
BmeT110I CYCGRG 1 cut(s) 424
BmgT120I GGNCC 3 cut(s) 778, 809, 881
BmiI GGNNCC 6 cut(s) 95, 136, 331, 582, 910, 1206
BmrFI CCNGG 8 cut(s) 91, 175, 394, 431, 515, 567, 885, 1235
BmsI GCATC 4 cut(s) 495, 519, 561, 1170
BpmI CTGGAG 2 cut(s) 573, 605
Bpu1102I GCTNAGC 2 cut(s) 855, 1173
BpuEI CTTGAG 1 cut(s) 1074
BpuMI CCSGG 5 cut(s) 91, 175, 394, 431, 567
BsaBI GATNNNNATC 1 cut(s) 509
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 5 cut(s) 350, 430, 575, 892, 1233
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 608, 775, 1239
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 5 cut(s) 282, 590, 931, 937, 1208
Bse21I CCTNAGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 3 cut(s) 515, 885, 1235
BseDI CCNNGG 5 cut(s) 350, 430, 575, 892, 1233
BseGI GGATG 3 cut(s) 510, 769, 1194
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 608, 775, 1239
BseMII CTCAG 9 cut(s) 53, 225, 296, 461, 731, 737, 776, 869, 1187
BseNI ACTGG 5 cut(s) 282, 590, 931, 937, 1208
BseRI GAGGAG 2 cut(s) 187, 831
BseX3I CGGCCG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 395, 472
BseYI CCCAGC 2 cut(s) 260, 1027
Bsh1236I CGCG 4 cut(s) 26, 389, 981, 1074
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 4 cut(s) 392, 838, 883, 1198
BshNI GGYRCC 1 cut(s) 1204
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 3 cut(s) 110, 565, 574
BsiHKCI CYCGRG 1 cut(s) 424
BsiSI CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 566
BslFI GGGAC 4 cut(s) 60, 584, 751, 1010
BslI CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 608, 775, 1239
BsmAI GTCTC 4 cut(s) 199, 224, 667, 726
BsmFI GGGAC 4 cut(s) 60, 584, 751, 1010
BsnI GGCC 4 cut(s) 392, 838, 883, 1198
BsoBI CYCGRG 1 cut(s) 424
Bsp1286I GDGCHC 5 cut(s) 110, 565, 574, 585, 763
Bsp143I GATC 1 cut(s) 469
Bsp1720I GCTNAGC 2 cut(s) 855, 1173
BspANI GGCC 4 cut(s) 392, 838, 883, 1198
BspCNI CTCAG 9 cut(s) 52, 226, 295, 460, 730, 736, 775, 868, 1186
BspFNI CGCG 4 cut(s) 26, 389, 981, 1074
BspLI GGNNCC 6 cut(s) 95, 136, 331, 582, 910, 1206
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 1 cut(s) 477
BspQI GCTCTTC 1 cut(s) 1146
BspT107I GGYRCC 1 cut(s) 1204
BsrBI CCGCTC 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 5 cut(s) 282, 590, 931, 937, 1208
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 5 cut(s) 350, 430, 575, 892, 1233
BssMI GATC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 575, 892
Bst2UI CCWGG 3 cut(s) 515, 885, 1235
Bst4CI ACNGT 5 cut(s) 598, 636, 867, 1018, 1103
Bst6I CTCTTC 2 cut(s) 243, 1146
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 6 cut(s) 133, 212, 459, 714, 759, 1009
BstDSI CCRYGG 1 cut(s) 350
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 3 cut(s) 510, 769, 1194
BstFNI CGCG 4 cut(s) 26, 389, 981, 1074
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 4 cut(s) 312, 389, 510, 1074
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 4 cut(s) 199, 224, 667, 726
BstMBI GATC 1 cut(s) 469
BstMCI CGRYCG 1 cut(s) 393
BstNI CCWGG 3 cut(s) 515, 885, 1235
BstNSI RCATGY 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 8 cut(s) 89, 173, 392, 429, 513, 565, 883, 1233
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 4 cut(s) 26, 389, 981, 1074
BstV1I GCAGC 2 cut(s) 395, 472
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 465
BstYI RGATCY 1 cut(s) 469
BstZI CGGCCG 1 cut(s) 390
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 4 cut(s) 392, 838, 883, 1198
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 1147
BtsCI GGATG 3 cut(s) 510, 769, 1194
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 4 cut(s) 123, 501, 594, 1215
Cac8I GCNNGC 6 cut(s) 133, 212, 459, 714, 759, 1009
CaiI CAGNNNCTG 2 cut(s) 596, 688
CfoI GCGC 4 cut(s) 312, 389, 510, 1074
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 778, 809, 881
CseI GACGC 3 cut(s) 29, 137, 388
Csp6I GTAC 4 cut(s) 304, 613, 930, 1076
CviAII CATG 3 cut(s) 479, 1043, 1217
CviQI GTAC 4 cut(s) 304, 613, 930, 1076
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 816
DseDI GACNNNNNNGTC 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 390
EagI CGGCCG 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 243, 1146
EarI CTCTTC 2 cut(s) 243, 1146
EciI GGCGGA 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 108
EclXI CGGCCG 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 575, 892
Eco24I GRGCYC 3 cut(s) 110, 585, 763
Eco47I GGWCC 2 cut(s) 778, 809
Eco47III AGCGCT 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 710
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 424
Eco91I GGTNACC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 3 cut(s) 513, 883, 1233
EcoT14I CCWWGG 2 cut(s) 575, 892
EcoT22I ATGCAT 1 cut(s) 1048
EcoT38I GRGCYC 3 cut(s) 110, 585, 763
ErhI CCWWGG 2 cut(s) 575, 892
FaeI CATG 3 cut(s) 482, 1046, 1220
FaiI YATR 8 cut(s) 480, 540, 905, 1044, 1098, 1131, 1169, 1218
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 4 cut(s) 60, 584, 751, 1010
FatI CATG 3 cut(s) 478, 1042, 1216
FauI CCCGC 2 cut(s) 750, 956
FblI GTMKAC 1 cut(s) 923
FokI GGATG 3 cut(s) 497, 756, 1201
FriOI GRGCYC 3 cut(s) 110, 585, 763
FspAI RTGCGCAY 1 cut(s) 509
FspBI CTAG 1 cut(s) 1249
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 4 cut(s) 311, 388, 509, 1073
GsaI CCCAGC 2 cut(s) 264, 1031
GsuI CTGGAG 2 cut(s) 573, 605
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 4 cut(s) 392, 838, 883, 1198
HapII CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 566
HgaI GACGC 3 cut(s) 29, 137, 388
HhaI GCGC 4 cut(s) 312, 389, 510, 1074
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 3 cut(s) 482, 1046, 1220
Hin6I GCGC 4 cut(s) 310, 387, 508, 1072
HinP1I GCGC 4 cut(s) 310, 387, 508, 1072
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 2 cut(s) 522, 1005
HpaII CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 566
HphI GGTGA 2 cut(s) 43, 360
Hpy166II GTNNAC 6 cut(s) 267, 288, 368, 924, 1213, 1242
Hpy188I TCNGA 8 cut(s) 61, 121, 202, 690, 774, 959, 970, 1152
Hpy188III TCNNGA 5 cut(s) 41, 293, 781, 793, 1124
Hpy8I GTNNAC 6 cut(s) 267, 288, 368, 924, 1213, 1242
Hpy99I CGWCG 7 cut(s) 20, 23, 65, 68, 245, 382, 832
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 5 cut(s) 598, 636, 867, 1018, 1103
HpyCH4IV ACGT 1 cut(s) 1059
HpyCH4V TGCA 4 cut(s) 488, 658, 847, 1046
HpySE526I ACGT 1 cut(s) 1059
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 3 cut(s) 482, 1046, 1220
HspAI GCGC 4 cut(s) 310, 387, 508, 1072
Kzo9I GATC 1 cut(s) 469
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 7 cut(s) 93, 140, 335, 568, 577, 580, 908
Lsp1109I GCAGC 2 cut(s) 395, 472
LweI GCATC 4 cut(s) 495, 519, 561, 1170
MaeI CTAG 1 cut(s) 1249
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 2 cut(s) 33, 592
MalI GATC 1 cut(s) 471
MbiI CCGCTC 1 cut(s) 667
MboI GATC 1 cut(s) 469
MboII GAAGA 8 cut(s) 112, 260, 530, 703, 747, 1076, 1125, 1133
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 5 cut(s) 110, 565, 574, 585, 763
MlyI GAGTC 6 cut(s) 80, 230, 262, 311, 798, 929
MmeI TCCRAC 2 cut(s) 84, 766
Mph1103I ATGCAT 1 cut(s) 1048
MspA1I CMGCKG 2 cut(s) 757, 859
MspI CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 566
MspR9I CCNGG 8 cut(s) 91, 175, 394, 431, 515, 567, 885, 1235
MvaI CCWGG 3 cut(s) 515, 885, 1235
MvnI CGCG 4 cut(s) 26, 389, 981, 1074
NciI CCSGG 5 cut(s) 91, 175, 394, 431, 567
NdeII GATC 1 cut(s) 469
NlaIII CATG 3 cut(s) 482, 1046, 1220
NlaIV GGNNCC 6 cut(s) 95, 136, 331, 582, 910, 1206
NmeAIII GCCGAG 1 cut(s) 683
NmuCI GTSAC 1 cut(s) 592
NsbI TGCGCA 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 1048
NspI RCATGY 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 1146
PfeI GAWTC 5 cut(s) 46, 685, 738, 888, 1180
PflMI CCANNNNNTGG 1 cut(s) 775
PfoI TCCNGGA 2 cut(s) 89, 513
PleI GAGTC 6 cut(s) 80, 229, 262, 311, 797, 928
PpsI GAGTC 6 cut(s) 80, 229, 262, 311, 797, 928
Psp124BI GAGCTC 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 1059
Psp6I CCWGG 3 cut(s) 513, 883, 1233
PspEI GGTNACC 1 cut(s) 33
PspFI CCCAGC 2 cut(s) 260, 1027
PspGI CCWGG 3 cut(s) 513, 883, 1233
PspN4I GGNNCC 6 cut(s) 95, 136, 331, 582, 910, 1206
PspPI GGNCC 3 cut(s) 778, 809, 881
PspXI VCTCGAGB 1 cut(s) 424
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 2 cut(s) 596, 688
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 4 cut(s) 305, 614, 931, 1077
RsaNI GTAC 4 cut(s) 304, 613, 930, 1076
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 1146
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 3 cut(s) 778, 809, 881
SchI GAGTC 6 cut(s) 80, 230, 262, 311, 798, 929
ScrFI CCNGG 8 cut(s) 91, 175, 394, 431, 515, 567, 885, 1235
SduI GDGCHC 5 cut(s) 110, 565, 574, 585, 763
SfaNI GCATC 4 cut(s) 495, 519, 561, 1170
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 424
SgrAI CRCCGGYG 1 cut(s) 214
SinI GGWCC 2 cut(s) 778, 809
SlaI CTCGAG 1 cut(s) 424
SmlI CTYRAG 2 cut(s) 424, 1089
SmoI CTYRAG 2 cut(s) 424, 1089
SspMI CTAG 1 cut(s) 1249
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 8 cut(s) 89, 173, 392, 429, 513, 565, 883, 1233
StyI CCWWGG 2 cut(s) 575, 892
TaaI ACNGT 5 cut(s) 598, 636, 867, 1018, 1103
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 5 cut(s) 15, 159, 377, 425, 534
TatI WGTACW 1 cut(s) 303
TauI GCSGC 8 cut(s) 26, 392, 408, 414, 457, 485, 862, 984
TfiI GAWTC 5 cut(s) 46, 685, 738, 888, 1180
TscAI CASTG 4 cut(s) 130, 501, 601, 1215
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 408, 485
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 1 cut(s) 1146
TspGWI ACGGA 2 cut(s) 747, 822
TspRI CASTG 4 cut(s) 130, 501, 601, 1215
Van91I CCANNNNNTGG 1 cut(s) 775
VpaK11BI GGWCC 2 cut(s) 778, 809
XceI RCATGY 1 cut(s) 482
XhoI CTCGAG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 923
XspI CTAG 1 cut(s) 1249
Zsp2I ATGCAT 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.