Rorug03G0072700

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011807
Physical Location & Seq
Reverse (-)
5778376 .. 5779712
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0072700.1

Sequence Viewer

Length: 552 bp
ATGATGAATTTGAGGAGCAAGGGATCAGTGGCTCTAGAGGGTGCTGAGAGGAGCTGTGTTGACTGCAAGGTGACCAGGACACCATTGTGGAGAAGTGGGCCGGCTGGTCCAAAGACCCTGTGCAATGCCTGCGGCATCAGGCTGAGGAAACGACTTGCCAGTCTGAACCCAGAAGAGAAAGCAAACAAGGGGAAGAGAAAGAAATCCAGAACAGAAAGAACTAGGCCAACAGCCTCTGTCTCCACTAATGGCTCAACAACAAACACTGCTGCTGGTAAAAGCACTTCCACAACAGCCAAAAGTGCTTCTCCTCCTCCTCCTCCTCCTCCTGCTGCTTATGGCAATGCTCGTGGCAGTCGAGGCACATACTTGCTCAGGGCGGTGAGGATTGTTGCGAATAAACAGAGAGTGGTGAGAAAGTTGAGGTGGTGCTTCCAAAGGAGGAGGAGGACTAATTTTAGGAGGACTGGTTTTTACTTTTTCGACAAAAATTTGGAACAAGCAGCTGTGGCGGCATTGCTAGCTCTCTCATGTGGCTCCGCTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.98

Weight (kDa)

11.48

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 19 - 51 2.2e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54000 AT3G54000 AT3G54000
fragaria_vesca FvH4_6g12650
malus_domestica MD04G1140200.v1.1 MD12G1155400.v1.1 MD15G1149300.v1.1
prunus_persica Prupe.6G265300_v2.0.a1
pyrus_communis pycom04g12780 pycom12g14750
rosa_chinensis RchiOBHm_Chr3g0464501
rosa_laevigata RLG00000024691
rosa_multiflora Rmu_sc0003074.1_g000005
rosa_roxburghii Rroxscaffold_6G00415610
rosa_rugosa Rorug03G0072700
rosa_samantha Rh3BG134900 Rh3CG137400 Rh3DG136200
rosa_wichuraiana Rw3G011030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 542
AciI CCGC 4 cut(s) 132, 380, 512, 540
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 2 cut(s) 7, 490
AjnI CCWGG 1 cut(s) 74
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 3 cut(s) 54, 506, 524
AluI AGCT 3 cut(s) 54, 506, 524
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 2 cut(s) 98, 224
ApeKI GCWGC 3 cut(s) 269, 332, 503
ApoI RAATTY 2 cut(s) 7, 490
AspS9I GGNCC 2 cut(s) 98, 107
AsuHPI GGTGA 3 cut(s) 82, 394, 424
AsuNHI GCTAGC 1 cut(s) 520
AvaII GGWCC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 268, 300
BauI CACGAG 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 256, 319, 515
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 3 cut(s) 35, 222, 521
BisI GCNGC 5 cut(s) 133, 270, 333, 504, 513
BlsI GCNGC 5 cut(s) 134, 271, 334, 505, 514
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 98, 107
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 144
BmtI GCTAGC 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 143, 374
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 159, 472
Bse3DI GCAATG 3 cut(s) 130, 349, 515
BseBI CCWGG 1 cut(s) 76
BseMI GCAATG 3 cut(s) 130, 349, 515
BseMII CTCAG 3 cut(s) 36, 134, 388
BseNI ACTGG 2 cut(s) 159, 472
BseXI GCAGC 3 cut(s) 256, 319, 515
BshFI GGCC 2 cut(s) 100, 226
BsiSI CCGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 2 cut(s) 100, 226
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 4 cut(s) 132, 380, 512, 540
BspANI GGCC 2 cut(s) 100, 226
BspCNI CTCAG 3 cut(s) 37, 135, 387
BspLI GGNNCC 1 cut(s) 538
BspOI GCTAGC 1 cut(s) 524
BspPI GGATC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 3 cut(s) 130, 349, 515
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 159, 472
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 1 cut(s) 23
BssSI CACGAG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 168, 188
BstAPI GCANNNNNTGC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 102, 130, 522
BstDEI CTNAG 3 cut(s) 45, 143, 374
BstEII GGTNACC 1 cut(s) 70
BstKTI GATC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 6 cut(s) 129, 302, 360, 509, 512, 521
BstNI CCWGG 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 256, 319, 515
BsuRI GGCC 2 cut(s) 100, 226
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 33, 264
Cac8I GCNNGC 3 cut(s) 102, 130, 522
CaiI CAGNNNCTG 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 98, 107
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 1 cut(s) 531
DdeI CTNAG 3 cut(s) 45, 143, 374
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
DrdI GACNNNNNNGTC 1 cut(s) 159
DseDI GACNNNNNNGTC 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 168, 188
EarI CTCTTC 2 cut(s) 168, 188
Eco47I GGWCC 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 534
FaiI YATR 3 cut(s) 339, 367, 532
FatI CATG 1 cut(s) 530
Fnu4HI GCNGC 5 cut(s) 133, 270, 333, 504, 513
Fsp4HI GCNGC 5 cut(s) 133, 270, 333, 504, 513
FspBI CTAG 3 cut(s) 35, 222, 521
GluI GCNGC 5 cut(s) 133, 270, 333, 504, 513
HaeIII GGCC 2 cut(s) 100, 226
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 534
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 82, 394, 424
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 35, 207, 545
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 66, 123
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 302, 360, 509, 512, 521
HpyF3I CTNAG 3 cut(s) 45, 143, 374
Hsp92II CATG 1 cut(s) 534
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 3 cut(s) 15, 51, 542
Lsp1109I GCAGC 3 cut(s) 256, 319, 515
LweI GCATC 1 cut(s) 144
MaeI CTAG 3 cut(s) 35, 222, 521
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 25
MbiI CCGCTC 1 cut(s) 542
MboI GATC 1 cut(s) 23
MboII GAAGA 2 cut(s) 185, 205
MluCI AATT 3 cut(s) 7, 454, 490
MroNI GCCGGC 1 cut(s) 100
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 6 cut(s) 129, 302, 360, 509, 512, 521
NaeI GCCGGC 1 cut(s) 102
NdeII GATC 1 cut(s) 23
NgoMIV GCCGGC 1 cut(s) 100
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 1 cut(s) 534
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PdiI GCCGGC 1 cut(s) 102
PkrI GCNGC 5 cut(s) 134, 271, 334, 505, 514
Psp6I CCWGG 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 2 cut(s) 98, 107
PstNI CAGNNNCTG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 506
RseI CAYNNNNRTG 1 cut(s) 85
SatI GCNGC 5 cut(s) 133, 270, 333, 504, 513
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 2 cut(s) 98, 107
ScrFI CCNGG 1 cut(s) 76
SetI ASST 5 cut(s) 56, 72, 428, 508, 526
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 85
Sse9I AATT 3 cut(s) 7, 454, 490
SsiI CCGC 4 cut(s) 132, 380, 512, 540
SspMI CTAG 3 cut(s) 35, 222, 521
StyD4I CCNGG 1 cut(s) 74
TaqI TCGA 2 cut(s) 358, 483
TasI AATT 3 cut(s) 7, 454, 490
TauI GCSGC 2 cut(s) 135, 515
TscAI CASTG 2 cut(s) 33, 271
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 3 cut(s) 269, 332, 503
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 2 cut(s) 33, 271
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 2 cut(s) 7, 490
XbaI TCTAGA 1 cut(s) 34
XspI CTAG 3 cut(s) 35, 222, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.