Rh3DG136200

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011807
Physical Location & Seq
Reverse (-)
11602735 .. 11606375
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG136200.1

Sequence Viewer

Length: 1038 bp
ATGGCTGATGAGTTCGACGACGCCGCGTTTTGGTTACCTCAGGAGATTCTCACCTATTCCGACGACGAAATCAGTCCCAAGATTGACTCCGGGAGCCGGAAGATGAGTTCGTTTGGCTCTGACACTGACGCTACCTTCAAGACTGCTCTGTTTCCCTTCGAGTTTCCCCACTCCGGGTTTGGGGCTTTCGGTGTCTCCTCCGATTTCAGCTCCCCGGTGGAGTCCAGCGAGACTGAGAGCGACGAGGAAGAGTATCTCGCTGGGCTGACTCGCCAGCTGGCGCAGTCCACTCTCGACGACGAGTTTAAGCGCTACGACTCGGTTCTTGGCTCCAAGAACAACTCAAAGCCGTGGGTGTCGTCTGGTTCACCGCAATCGACGCTGTGTGCGGCCGGGAATGGTTGCGGCTGCGGCGGACAAGGCTCGAGCCGGGGAAGCCCGAACGCTCAGTCGCCGCCGGCCACTTGGGATCTTCTACATGCGGCTGCAGGGGAAGTGGCTAAGATGCGCATCCAGGAAGAAGCTTTGCGTTTCGACCAAAAAAGCAGAGGCATCTTGGGTGCTCCAAGGGAGCTCTCTCCAGTCACTGTCCCTGATTTCGGGTACTACCTCCAGCACCAACAGCAGTCACTTTCCCAGAAGCACTTGCAGTTTGAGCGGTTGAGACAGCAACAGATTCTGAAGAACAACATCTCGGCGGTGCTTGCTCAGTCTCAGGCGAACGGAAGATTCCAGCACCAGCGGGCTCAGTCCCATCCGATGGTCCAGAACCGAGTCAGGAACACCAACAATGGACCCCTGGGTCTTTCGCCGTCGGCTTGGCCTCCACTGCAACAAGCTCAGCGGCAACAGTTTCAGCCGAATGGGCCTGGATTCCAAGGTGCTCTCATGGGAGCCAAAAAGGAGTCTACTGGTACTGGTGTGTTCTTACCCCGCCAAATCGGAACCCCATCTGAATATCCTCGCGGCAAGAAGCAACAACCCAAACAAGGTCGGTCCACACTCATACCCCACCCCCCTCAATTTTGTTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

37.78

Weight (kDa)

6.67

Isoelectric Point (pI)

64.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54000 AT3G54000 AT3G54000
fragaria_vesca FvH4_6g12650
malus_domestica MD04G1140200.v1.1 MD12G1155400.v1.1 MD15G1149300.v1.1
prunus_persica Prupe.6G265300_v2.0.a1
pyrus_communis pycom04g12780 pycom12g14750
rosa_chinensis RchiOBHm_Chr3g0464501
rosa_laevigata RLG00000024691
rosa_multiflora Rmu_sc0003074.1_g000005
rosa_roxburghii Rroxscaffold_6G00415610
rosa_rugosa Rorug03G0072700
rosa_samantha Rh3BG134900 Rh3CG137400 Rh3DG136200
rosa_wichuraiana Rw3G011030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 801
Acc16I TGCGCA 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 760
AccBSI CCGCTC 1 cut(s) 658
AccI GTMKAC 1 cut(s) 908
AccII CGCG 2 cut(s) 26, 966
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 2 cut(s) 390, 459
AcuI CTGAAG 1 cut(s) 701
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 605, 916
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 599, 760, 989
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 3 cut(s) 513, 798, 868
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 5 cut(s) 210, 277, 524, 574, 839
AluI AGCT 5 cut(s) 210, 277, 524, 574, 839
Alw21I GWGCWC 3 cut(s) 565, 576, 886
Alw26I GTCTC 4 cut(s) 199, 224, 658, 717
AlwI GGATC 1 cut(s) 477
AlwNI CAGNNNCTG 2 cut(s) 587, 679
Ama87I CYCGRG 1 cut(s) 424
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 4 cut(s) 390, 459, 821, 866
ApeKI GCWGC 2 cut(s) 408, 485
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspLEI GCGC 3 cut(s) 283, 312, 510
AspS9I GGNCC 4 cut(s) 763, 794, 866, 996
AsuC2I CCSGG 5 cut(s) 91, 175, 215, 394, 431
AsuHPI GGTGA 2 cut(s) 43, 360
AvaI CYCGRG 1 cut(s) 424
AvaII GGWCC 3 cut(s) 763, 794, 996
AxyI CCTNAGG 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BanII GRGCYC 2 cut(s) 576, 748
Bbv12I GWGCWC 3 cut(s) 565, 576, 886
BbvI GCAGC 2 cut(s) 395, 472
BccI CCATC 3 cut(s) 754, 762, 958
BceAI ACGGC 2 cut(s) 334, 796
BciT130I CCWGG 3 cut(s) 515, 800, 870
BcnI CCSGG 5 cut(s) 91, 175, 215, 394, 431
BcoDI GTCTC 4 cut(s) 199, 224, 658, 717
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 865
BlpI GCTNAGC 1 cut(s) 840
Bme1390I CCNGG 8 cut(s) 91, 175, 215, 394, 431, 515, 800, 870
Bme18I GGWCC 3 cut(s) 763, 794, 996
BmeT110I CYCGRG 1 cut(s) 424
BmgT120I GGNCC 4 cut(s) 763, 794, 866, 996
BmiI GGNNCC 5 cut(s) 95, 331, 796, 895, 946
BmrFI CCNGG 8 cut(s) 91, 175, 215, 394, 431, 515, 800, 870
BmsI GCATC 3 cut(s) 495, 519, 561
BpmI CTGGAG 2 cut(s) 564, 596
Bpu1102I GCTNAGC 1 cut(s) 840
BpuMI CCSGG 5 cut(s) 91, 175, 215, 394, 431
BsaBI GATNNNNATC 1 cut(s) 509
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 7 cut(s) 213, 350, 430, 566, 798, 799, 877
Bsc4I CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 599, 760, 989
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 3 cut(s) 581, 916, 922
Bse21I CCTNAGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 3 cut(s) 515, 800, 870
BseDI CCNNGG 7 cut(s) 213, 350, 430, 566, 798, 799, 877
BseGI GGATG 2 cut(s) 510, 754
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 599, 760, 989
BseMII CTCAG 7 cut(s) 53, 225, 461, 722, 728, 761, 854
BseNI ACTGG 3 cut(s) 581, 916, 922
BseRI GAGGAG 1 cut(s) 187
BseX3I CGGCCG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 395, 472
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 2 cut(s) 26, 966
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 4 cut(s) 392, 461, 823, 868
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 3 cut(s) 565, 576, 886
BsiHKCI CYCGRG 1 cut(s) 424
BsiSI CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 458
BslFI GGGAC 3 cut(s) 60, 575, 736
BslI CCNNNNNNNGG 8 cut(s) 30, 96, 173, 174, 180, 599, 760, 989
BsmAI GTCTC 4 cut(s) 199, 224, 658, 717
BsmFI GGGAC 3 cut(s) 60, 575, 736
BsnI GGCC 4 cut(s) 392, 461, 823, 868
BsoBI CYCGRG 1 cut(s) 424
Bsp1286I GDGCHC 4 cut(s) 565, 576, 748, 886
Bsp143I GATC 1 cut(s) 469
Bsp1720I GCTNAGC 1 cut(s) 840
BspANI GGCC 4 cut(s) 392, 461, 823, 868
BspCNI CTCAG 7 cut(s) 52, 226, 460, 721, 727, 760, 853
BspFNI CGCG 2 cut(s) 26, 966
BspLI GGNNCC 5 cut(s) 95, 331, 796, 895, 946
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 1 cut(s) 477
BsrBI CCGCTC 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 3 cut(s) 581, 916, 922
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 7 cut(s) 213, 350, 430, 566, 798, 799, 877
BssMI GATC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 566, 877
Bst2UI CCWGG 3 cut(s) 515, 800, 870
Bst4CI ACNGT 2 cut(s) 589, 852
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 5 cut(s) 275, 279, 459, 705, 744
BstDEI CTNAG 8 cut(s) 39, 234, 447, 501, 708, 714, 747, 840
BstDSI CCRYGG 1 cut(s) 350
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 2 cut(s) 510, 754
BstFNI CGCG 2 cut(s) 26, 966
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 3 cut(s) 283, 312, 510
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 4 cut(s) 199, 224, 658, 717
BstMBI GATC 1 cut(s) 469
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 9 cut(s) 379, 411, 420, 435, 622, 655, 704, 829, 865
BstNI CCWGG 3 cut(s) 515, 800, 870
BstNSI RCATGY 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 8 cut(s) 89, 173, 213, 392, 429, 513, 798, 868
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 2 cut(s) 26, 966
BstV1I GCAGC 2 cut(s) 395, 472
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BstZI CGGCCG 1 cut(s) 390
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 4 cut(s) 392, 461, 823, 868
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 2 cut(s) 510, 754
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 3 cut(s) 123, 585, 827
Cac8I GCNNGC 5 cut(s) 275, 279, 459, 705, 744
CaiI CAGNNNCTG 2 cut(s) 587, 679
CfoI GCGC 3 cut(s) 283, 312, 510
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 4 cut(s) 763, 794, 866, 996
CseI GACGC 3 cut(s) 29, 137, 388
Csp6I GTAC 2 cut(s) 604, 915
CviAII CATG 2 cut(s) 479, 889
CviQI GTAC 2 cut(s) 604, 915
DdeI CTNAG 8 cut(s) 39, 234, 447, 501, 708, 714, 747, 840
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 801
DseDI GACNNNNNNGTC 1 cut(s) 801
EaeI YGGCCR 2 cut(s) 390, 459
EagI CGGCCG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 574
EclXI CGGCCG 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 566, 877
Eco24I GRGCYC 2 cut(s) 576, 748
Eco47I GGWCC 3 cut(s) 763, 794, 996
Eco47III AGCGCT 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 701
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 424
Eco91I GGTNACC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 574
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 3 cut(s) 513, 798, 868
EcoT14I CCWWGG 2 cut(s) 566, 877
EcoT38I GRGCYC 2 cut(s) 576, 748
ErhI CCWWGG 2 cut(s) 566, 877
FaeI CATG 2 cut(s) 482, 892
FaiI YATR 3 cut(s) 480, 890, 1007
FaqI GGGAC 3 cut(s) 60, 575, 736
FatI CATG 2 cut(s) 478, 888
FauI CCCGC 2 cut(s) 735, 941
FblI GTMKAC 1 cut(s) 908
FokI GGATG 2 cut(s) 497, 741
FriOI GRGCYC 2 cut(s) 576, 748
FspAI RTGCGCAY 1 cut(s) 509
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 3 cut(s) 282, 311, 509
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 2 cut(s) 564, 596
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 4 cut(s) 392, 461, 823, 868
HapII CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 458
HgaI GACGC 3 cut(s) 29, 137, 388
HhaI GCGC 3 cut(s) 283, 312, 510
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 482, 892
Hin6I GCGC 3 cut(s) 281, 310, 508
HinP1I GCGC 3 cut(s) 281, 310, 508
HindIII AAGCTT 1 cut(s) 522
HpaII CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 458
HphI GGTGA 2 cut(s) 43, 360
Hpy166II GTNNAC 4 cut(s) 288, 368, 909, 999
Hpy188I TCNGA 7 cut(s) 61, 121, 202, 681, 759, 944, 955
Hpy188III TCNNGA 5 cut(s) 41, 139, 293, 766, 778
Hpy8I GTNNAC 4 cut(s) 288, 368, 909, 999
Hpy99I CGWCG 9 cut(s) 20, 23, 65, 68, 245, 299, 302, 382, 817
HpyAV CCTTC 2 cut(s) 145, 166
HpyCH4III ACNGT 2 cut(s) 589, 852
HpyCH4V TGCA 3 cut(s) 488, 649, 832
HpyF10VI GCNNNNNNNGC 9 cut(s) 379, 411, 420, 435, 622, 655, 704, 829, 865
HpyF3I CTNAG 8 cut(s) 39, 234, 447, 501, 708, 714, 747, 840
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 482, 892
HspAI GCGC 3 cut(s) 281, 310, 508
KroI GCCGGC 1 cut(s) 457
KroNI GCCGGC 1 cut(s) 459
Kzo9I GATC 1 cut(s) 469
LmnI GCTCC 6 cut(s) 93, 215, 335, 568, 571, 893
Lsp1109I GCAGC 2 cut(s) 395, 472
LweI GCATC 3 cut(s) 495, 519, 561
MaeIII GTNAC 3 cut(s) 33, 583, 627
MalI GATC 1 cut(s) 471
MbiI CCGCTC 1 cut(s) 658
MboI GATC 1 cut(s) 469
MboII GAAGA 6 cut(s) 112, 260, 464, 530, 694, 738
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 4 cut(s) 565, 576, 748, 886
MluCI AATT 1 cut(s) 1022
MlyI GAGTC 6 cut(s) 80, 230, 262, 311, 783, 914
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 8 cut(s) 48, 208, 238, 542, 620, 834, 972, 1029
MroNI GCCGGC 1 cut(s) 457
MseI TTAA 2 cut(s) 306, 1036
MspA1I CMGCKG 3 cut(s) 277, 742, 844
MspI CCGG 7 cut(s) 90, 97, 174, 215, 393, 430, 458
MspR9I CCNGG 8 cut(s) 91, 175, 215, 394, 431, 515, 800, 870
MvaI CCWGG 3 cut(s) 515, 800, 870
MvnI CGCG 2 cut(s) 26, 966
MwoI GCNNNNNNNGC 9 cut(s) 379, 411, 420, 435, 622, 655, 704, 829, 865
NaeI GCCGGC 1 cut(s) 459
NciI CCSGG 5 cut(s) 91, 175, 215, 394, 431
NdeII GATC 1 cut(s) 469
NgoMIV GCCGGC 1 cut(s) 457
NlaIII CATG 2 cut(s) 482, 892
NlaIV GGNNCC 5 cut(s) 95, 331, 796, 895, 946
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 2 cut(s) 583, 627
NsbI TGCGCA 1 cut(s) 509
NspI RCATGY 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 424
PasI CCCWGGG 1 cut(s) 799
PdiI GCCGGC 1 cut(s) 459
PfeI GAWTC 4 cut(s) 46, 676, 729, 873
PflMI CCANNNNNTGG 1 cut(s) 760
PfoI TCCNGGA 2 cut(s) 89, 513
PleI GAGTC 6 cut(s) 80, 229, 262, 311, 782, 913
PpsI GAGTC 6 cut(s) 80, 229, 262, 311, 782, 913
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 3 cut(s) 513, 798, 868
PspEI GGTNACC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 513, 798, 868
PspN4I GGNNCC 5 cut(s) 95, 331, 796, 895, 946
PspPI GGNCC 4 cut(s) 763, 794, 866, 996
PspXI VCTCGAGB 1 cut(s) 424
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 2 cut(s) 587, 679
PsuI RGATCY 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 605, 916
RsaNI GTAC 2 cut(s) 604, 915
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 306, 1036
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 4 cut(s) 763, 794, 866, 996
SchI GAGTC 6 cut(s) 80, 230, 262, 311, 783, 914
ScrFI CCNGG 8 cut(s) 91, 175, 215, 394, 431, 515, 800, 870
SduI GDGCHC 4 cut(s) 565, 576, 748, 886
SfaNI GCATC 3 cut(s) 495, 519, 561
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 424
SinI GGWCC 3 cut(s) 763, 794, 996
SlaI CTCGAG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 1 cut(s) 1022
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 8 cut(s) 89, 173, 213, 392, 429, 513, 798, 868
StyI CCWWGG 2 cut(s) 566, 877
TaaI ACNGT 2 cut(s) 589, 852
TaqI TCGA 6 cut(s) 15, 159, 294, 377, 425, 534
TaqII GACCGA 1 cut(s) 984
TasI AATT 1 cut(s) 1022
TauI GCSGC 8 cut(s) 26, 392, 408, 414, 457, 485, 847, 969
TfiI GAWTC 4 cut(s) 46, 676, 729, 873
Tru1I TTAA 2 cut(s) 306, 1036
Tru9I TTAA 2 cut(s) 306, 1036
TscAI CASTG 3 cut(s) 130, 592, 834
TseFI GTSAC 2 cut(s) 583, 627
TseI GCWGC 2 cut(s) 408, 485
Tsp45I GTSAC 2 cut(s) 583, 627
TspDTI ATGAA 1 cut(s) 1021
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 3 cut(s) 130, 592, 834
Van91I CCANNNNNTGG 1 cut(s) 760
VpaK11BI GGWCC 3 cut(s) 763, 794, 996
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.