MD15G1184200.v1.1

Ankyrin repeats (many copies)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
14546201 .. 14549482
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1184200.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGCAGAGGCACCCAGATCAACGGTCGAGATCCGCCAGGCCCACCACCATCCACGGCTTCGCTCAGTCCGGCGACCTTCTTGGCTTCCAGAAGCTGCTTCGGGAAACCCCATCTCTTCTCAACGAAAAAAATGCCGTTATGCAACAAACTCCACTTCATGTTTCTGCTGGTTACAACAGGGGTGACATGGTTAAATTCCTTCTTGATTGGCAAGGGCCGGGTGAAGTTGAGTTGGAAGCCAAGAACATGTACGGAGAAACACCATTGCACATGGCAGCAAAGAATGGATGCAATGATGCTGCACGGTTGCTTCTTGTCCATGGTGCTTTTATAGAAGCCAAGGCAAATAATGGAATGACACCACTACACCTTGCTGTGTGGTACTCACTTACAGCTGAAGAGTTCTCGACTGTCAAAACATTGCTAGAGTACAATGCTGATTGCAGTGCTAAGGACGATGAGGGCATGACTCCTATACATCACTTATCTAAGGGCCGTGCAAATGGAAAGTTGCGGGAACTATTACAGTGGCACTATGAAGAGCAGAGGAGAAAAAAAGCAATTGAAGCATGCAGTGAAACTAAAGCTAAGATGGATGAACTTGAAAGTGAGTTATCAAATATTGTTGGTTTGCATGAGCTCAAGGTACAACTACGGAAATGGGCAAAGGGGATGCTTTTGGATGAGAGGCGTAAGGCCCTTGGGCTGAAAGTTGGTGTGAGGAGACCGCCTCATATGGCTTTTCTTGGAAATCCTGGAACTGGTAAGACCATGGTAGCTCGAATTCTTGGAAGATTACTCCATATGGTAGGAATTCTACGTACTGATAAAGTAACAGAAGTACAGAGGACCGATTTGGTTGGGGAATTCGTTGGTCACACTGGACCCAAAACTAGGAGGAAGATTAAAGACGCAGAGGGAGGAATCCTTTTTGTTGATGAAGCTTATCGACTAATACCCATGCAGAAGGCAGACGATAAAGACTATGGCTTGGAAGCATTGGAAGAGATCATGTCTGTCATGGATAGTGGAAAAATCGTAGTCATATTTGCAGGATATAGCGAACCAATGAAACGTGTAATTGCTTCAAATGAAGGTTTCTGTCGACGTGTGACCAAGTTTTTCAATTTTAGTGACTTCAATTCAGAAGACCTAGCAAAGATCCTCCATATCAAGATGCATAATCAGACAGAGGAGAGCTTGTTGTATGGATTTCAGTTACACTCTTCGTGCAGTATAGAAGCTGTTGCAGATCTGATTCGAAGAGAGACAACAGAAAAGCAGTGCAAGGAGATGAATGGAGGTTTAGTGGATACGATGTTAGTGAATGCTAGAGAGAGTTTGGATCTTAGGCTGGATTTTGATTGTATAGATACAGACGAACTTAGAACGATCACCCTAGAGGATTTACAAGCAGGCCTTCGGATTTTGTCACAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

53.98

Weight (kDa)

6.62

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 20 - 114 2.1e-12 Ankyrin repeats (3 copies)
Ank_5 PF13857 78 - 125 2.9e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 82 - 152 3.7e-13 Ankyrin repeats (3 copies)
Ank PF00023 84 - 114 6.8e-06 Ankyrin repeat
Ank_4 PF13637 89 - 127 3.4e-06 Ankyrin repeats (many copies)
AAA PF00004 247 - 362 3.4e-12 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011301)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 1105
AciI CCGC 3 cut(s) 33, 514, 728
AclWI GGATC 3 cut(s) 24, 1156, 1353
AcsI RAATTY 4 cut(s) 194, 783, 813, 866
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 6 cut(s) 251, 383, 431, 648, 823, 843
AfiI CCNNNNNNNGG 2 cut(s) 761, 894
AflIII ACRYGT 3 cut(s) 246, 1075, 1108
AgsI TTSAA 5 cut(s) 566, 605, 1089, 1126, 1141
AjiI CACGTC 1 cut(s) 1109
AjnI CCWGG 2 cut(s) 35, 754
AluBI AGCT 8 cut(s) 94, 395, 587, 640, 779, 944, 1200, 1244
AluI AGCT 8 cut(s) 94, 395, 587, 640, 779, 944, 1200, 1244
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 718, 1262
AlwI GGATC 3 cut(s) 24, 1156, 1353
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 5 cut(s) 38, 215, 493, 696, 1417
ApeKI GCWGC 3 cut(s) 94, 275, 299
ApoI RAATTY 4 cut(s) 194, 783, 813, 866
AspS9I GGNCC 6 cut(s) 39, 215, 493, 697, 849, 884
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 194, 233, 1387
AsuII TTCGAA 1 cut(s) 1261
AvaII GGWCC 2 cut(s) 849, 884
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 1155
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 3 cut(s) 81, 286, 287
BccI CCATC 3 cut(s) 56, 118, 586
BceAI ACGGC 3 cut(s) 70, 119, 480
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 37, 756
BciVI GTATCC 1 cut(s) 1306
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 718, 1262
BfaI CTAG 5 cut(s) 425, 894, 1154, 1332, 1400
BfuI GTATCC 1 cut(s) 1306
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 3 cut(s) 95, 276, 300
BlsI GCNGC 3 cut(s) 96, 277, 301
Bme1390I CCNGG 3 cut(s) 37, 219, 756
Bme18I GGWCC 2 cut(s) 849, 884
BmgBI CACGTC 1 cut(s) 1109
BmgT120I GGNCC 6 cut(s) 39, 215, 493, 697, 849, 884
BmiI GGNNCC 2 cut(s) 11, 886
BmrFI CCNGG 3 cut(s) 37, 219, 756
BmsI GCATC 4 cut(s) 278, 286, 663, 1167
BpiI GAAGAC 1 cut(s) 1155
BplI GAGNNNNNCTC 2 cut(s) 715, 747
Bpu10I CCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 1261
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 5 cut(s) 52, 319, 339, 700, 771
BsaXI ACNNNNNCTCC 4 cut(s) 1187, 1217, 1293, 1323
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 894
Bse1I ACTGG 2 cut(s) 766, 886
Bse3DI GCAATG 3 cut(s) 263, 298, 419
BseBI CCWGG 2 cut(s) 37, 756
BseDI CCNNGG 5 cut(s) 52, 319, 339, 700, 771
BseGI GGATG 5 cut(s) 48, 293, 601, 678, 688
BseLI CCNNNNNNNGG 2 cut(s) 761, 894
BseMI GCAATG 3 cut(s) 263, 298, 419
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 766, 886
BseRI GAGGAG 3 cut(s) 562, 736, 1208
BseXI GCAGC 3 cut(s) 81, 286, 287
BsgI GTGCAG 2 cut(s) 285, 1252
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 5 cut(s) 40, 217, 495, 698, 1419
BshNI GGYRCC 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 69, 218
BslI CCNNNNNNNGG 2 cut(s) 761, 894
BsmAI GTCTC 2 cut(s) 718, 1262
BsmI GAATGC 1 cut(s) 1333
BsnI GGCC 5 cut(s) 40, 217, 495, 698, 1419
Bso31I GGTCTC 1 cut(s) 718
Bsp119I TTCGAA 1 cut(s) 1261
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
Bsp19I CCATGG 2 cut(s) 319, 771
BspACI CCGC 3 cut(s) 33, 514, 728
BspANI GGCC 5 cut(s) 40, 217, 495, 698, 1419
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 11, 886
BspPI GGATC 3 cut(s) 24, 1156, 1353
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 1261
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 718
BsrDI GCAATG 3 cut(s) 263, 298, 419
BsrI ACTGG 2 cut(s) 766, 886
BssECI CCNNGG 5 cut(s) 52, 319, 339, 700, 771
BssMI GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
BssT1I CCWWGG 4 cut(s) 319, 339, 700, 771
Bst2UI CCWGG 2 cut(s) 37, 756
Bst4CI ACNGT 5 cut(s) 24, 306, 412, 528, 1437
Bst6I CTCTTC 6 cut(s) 120, 393, 534, 999, 1231, 1258
BstBAI YACGTR 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 1261
BstC8I GCNNGC 2 cut(s) 571, 1417
BstDEI CTNAG 6 cut(s) 63, 450, 489, 588, 1349, 1385
BstDSI CCRYGG 3 cut(s) 52, 319, 771
BstF5I GGATG 5 cut(s) 48, 293, 601, 678, 688
BstKTI GATC 7 cut(s) 19, 32, 1011, 1164, 1255, 1348, 1395
BstMAI GTCTC 2 cut(s) 718, 1262
BstMBI GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNI CCWGG 2 cut(s) 37, 756
BstNSI RCATGY 2 cut(s) 250, 573
BstSCI CCNGG 3 cut(s) 35, 217, 754
BstSNI TACGTA 1 cut(s) 821
BstV1I GCAGC 3 cut(s) 81, 286, 287
BstV2I GAAGAC 1 cut(s) 1155
BstX2I RGATCY 4 cut(s) 29, 1161, 1252, 1345
BstYI RGATCY 4 cut(s) 29, 1161, 1252, 1345
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 5 cut(s) 40, 217, 495, 698, 1419
BtgI CCRYGG 3 cut(s) 52, 319, 771
BtrI CACGTC 1 cut(s) 1109
BtsCI GGATG 5 cut(s) 48, 293, 601, 678, 688
BtsI GCAGTG 3 cut(s) 451, 580, 1289
BtsIMutI CAGTG 5 cut(s) 451, 533, 580, 879, 1289
Cac8I GCNNGC 2 cut(s) 571, 1417
CaiI CAGNNNCTG 1 cut(s) 94
Cfr13I GGNCC 6 cut(s) 39, 215, 493, 697, 849, 884
CseI GACGC 1 cut(s) 920
Csp6I GTAC 6 cut(s) 250, 382, 430, 647, 822, 842
CviQI GTAC 6 cut(s) 250, 382, 430, 647, 822, 842
DdeI CTNAG 6 cut(s) 63, 450, 489, 588, 1349, 1385
DpnI GATC 7 cut(s) 18, 31, 1010, 1163, 1254, 1347, 1394
DpnII GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
Eam1104I CTCTTC 6 cut(s) 120, 393, 534, 999, 1231, 1258
EarI CTCTTC 6 cut(s) 120, 393, 534, 999, 1231, 1258
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 640
Eco105I TACGTA 1 cut(s) 821
Eco130I CCWWGG 4 cut(s) 319, 339, 700, 771
Eco147I AGGCCT 1 cut(s) 1419
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 849, 884
Eco53kI GAGCTC 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 697
EcoRI GAATTC 3 cut(s) 783, 813, 866
EcoRII CCWGG 2 cut(s) 35, 754
EcoT14I CCWWGG 4 cut(s) 319, 339, 700, 771
EcoT22I ATGCAT 1 cut(s) 1182
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 4 cut(s) 319, 339, 700, 771
FalI AAGNNNNNCTT 2 cut(s) 1404, 1436
FauI CCCGC 1 cut(s) 507
FauNDI CATATG 2 cut(s) 735, 804
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 3 cut(s) 95, 276, 300
FokI GGATG 5 cut(s) 35, 300, 608, 685, 695
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 3 cut(s) 95, 276, 300
FspBI CTAG 5 cut(s) 425, 894, 1154, 1332, 1400
GluI GCNGC 3 cut(s) 95, 276, 300
HaeIII GGCC 5 cut(s) 40, 217, 495, 698, 1419
HapII CCGG 2 cut(s) 69, 218
HgaI GACGC 1 cut(s) 920
HincII GTYRAC 1 cut(s) 1106
HindII GTYRAC 1 cut(s) 1106
HindIII AAGCTT 1 cut(s) 942
HinfI GANTC 3 cut(s) 469, 924, 1258
HpaII CCGG 2 cut(s) 69, 218
HphI GGTGA 3 cut(s) 194, 233, 1387
Hpy166II GTNNAC 1 cut(s) 1106
Hpy188I TCNGA 4 cut(s) 1147, 1188, 1257, 1425
Hpy188III TCNNGA 6 cut(s) 27, 88, 101, 203, 406, 1174
Hpy8I GTNNAC 1 cut(s) 1106
Hpy99I CGWCG 1 cut(s) 1110
HpyAV CCTTC 5 cut(s) 86, 209, 961, 1088, 1430
HpyCH4III ACNGT 5 cut(s) 24, 306, 412, 528, 1437
HpyCH4IV ACGT 3 cut(s) 820, 1075, 1108
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 6 cut(s) 63, 450, 489, 588, 1349, 1385
HpySE526I ACGT 3 cut(s) 820, 1075, 1108
Kzo9I GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
LguI GCTCTTC 1 cut(s) 534
Lsp1109I GCAGC 3 cut(s) 81, 286, 287
LweI GCATC 4 cut(s) 278, 286, 663, 1167
MaeI CTAG 5 cut(s) 425, 894, 1154, 1332, 1400
MaeII ACGT 3 cut(s) 820, 1075, 1108
MaeIII GTNAC 8 cut(s) 170, 182, 832, 875, 1111, 1133, 1218, 1431
MalI GATC 7 cut(s) 18, 31, 1010, 1163, 1254, 1347, 1394
MboI GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
MboII GAAGA 9 cut(s) 107, 410, 551, 804, 913, 1016, 1160, 1218, 1275
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 4 cut(s) 29, 1161, 1252, 1345
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 8 cut(s) 194, 561, 783, 813, 866, 1080, 1126, 1141
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 213
Mph1103I ATGCAT 1 cut(s) 1182
MseI TTAA 2 cut(s) 192, 906
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 69, 218
MspR9I CCNGG 3 cut(s) 37, 219, 756
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 1333
MvaI CCWGG 2 cut(s) 37, 756
MwoI GCNNNNNNNGC 1 cut(s) 566
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 2 cut(s) 319, 771
NdeI CATATG 2 cut(s) 735, 804
NdeII GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
NlaIV GGNNCC 2 cut(s) 11, 886
NmuCI GTSAC 5 cut(s) 182, 875, 1111, 1133, 1431
NsiI ATGCAT 1 cut(s) 1182
NspI RCATGY 2 cut(s) 250, 573
NspV TTCGAA 1 cut(s) 1261
PaeI GCATGC 1 cut(s) 573
PceI AGGCCT 1 cut(s) 1419
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 1 cut(s) 1333
PfeI GAWTC 2 cut(s) 924, 1258
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 3 cut(s) 96, 277, 301
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 821
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 35, 754
PspGI CCWGG 2 cut(s) 35, 754
PspN4I GGNNCC 2 cut(s) 11, 886
PspPI GGNCC 6 cut(s) 39, 215, 493, 697, 849, 884
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 4 cut(s) 29, 1161, 1252, 1345
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 6 cut(s) 251, 383, 431, 648, 823, 843
RsaNI GTAC 6 cut(s) 250, 382, 430, 647, 822, 842
SacI GAGCTC 1 cut(s) 642
SalI GTCGAC 1 cut(s) 1104
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 192, 906
SatI GCNGC 3 cut(s) 95, 276, 300
Sau3AI GATC 7 cut(s) 16, 29, 1008, 1161, 1252, 1345, 1392
Sau96I GGNCC 6 cut(s) 39, 215, 493, 697, 849, 884
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 3 cut(s) 37, 219, 756
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 4 cut(s) 278, 286, 663, 1167
SfuI TTCGAA 1 cut(s) 1261
SinI GGWCC 2 cut(s) 849, 884
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SnaBI TACGTA 1 cut(s) 821
SphI GCATGC 1 cut(s) 573
Sse9I AATT 8 cut(s) 194, 561, 783, 813, 866, 1080, 1126, 1141
SseBI AGGCCT 1 cut(s) 1419
SsiI CCGC 3 cut(s) 33, 514, 728
SspI AATATT 1 cut(s) 622
SspMI CTAG 5 cut(s) 425, 894, 1154, 1332, 1400
SstI GAGCTC 1 cut(s) 642
StuI AGGCCT 1 cut(s) 1419
StyD4I CCNGG 3 cut(s) 35, 217, 754
StyI CCWWGG 4 cut(s) 319, 339, 700, 771
TaaI ACNGT 5 cut(s) 24, 306, 412, 528, 1437
TaiI ACGT 3 cut(s) 823, 1078, 1111
TaqI TCGA 6 cut(s) 26, 407, 781, 949, 1105, 1261
TaqII GACCGA 1 cut(s) 866
TasI AATT 8 cut(s) 194, 561, 783, 813, 866, 1080, 1126, 1141
TatI WGTACW 2 cut(s) 429, 841
TfiI GAWTC 2 cut(s) 924, 1258
Tru1I TTAA 2 cut(s) 192, 906
Tru9I TTAA 2 cut(s) 192, 906
TscAI CASTG 5 cut(s) 451, 533, 580, 886, 1289
TseFI GTSAC 5 cut(s) 182, 875, 1111, 1133, 1431
TseI GCWGC 3 cut(s) 94, 275, 299
Tsp45I GTSAC 5 cut(s) 182, 875, 1111, 1133, 1431
TspDTI ATGAA 7 cut(s) 146, 552, 612, 954, 1085, 1107, 1310
TspGWI ACGGA 2 cut(s) 267, 670
TspRI CASTG 5 cut(s) 451, 533, 580, 886, 1289
VpaK11BI GGWCC 2 cut(s) 849, 884
XapI RAATTY 4 cut(s) 194, 783, 813, 866
XceI RCATGY 2 cut(s) 250, 573
XmiI GTMKAC 1 cut(s) 1105
XspI CTAG 5 cut(s) 425, 894, 1154, 1332, 1400
Zsp2I ATGCAT 1 cut(s) 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.