Prupe.7G232000_v2.0.a1

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011301
Physical Location & Seq
Reverse (-)
20295277 .. 20298596
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G232000.1

Sequence Viewer

Length: 1440 bp
ATGCAGAGGTATCCAGATCAACGGTCAAGATCTGCCAAGCCCGTCACCATTCATGGCTACGCTCAGTCTGGGGACCTTCTTGGGTTTCAGAAGCTGCTCCGGGAAAACCCATCTCTTCTAAACGAAAGAAATGCCATCATGGCACAAACTCCACTTCATGTTTCTGCTGGTTACAATAAGGCTGAGATAGTTAAATTTCTTCTTGATTGGCAAGGGCCAGATAAGGTTGAGTTGGAAGCCAGGAACATGTATGGAGAAACACCATTGCACATGGCAGCTAAGAATGGATGCAATGATGCTGCACGGTTGCTTCTTGTTCACGGTGCTTTTGTTGAAGCCAAAGCAAATAATGGAATGACACCATTACACCTTGCTGTGTGGTACTCACTTCGAGCAGAAGAGTTCTCAACTGTCAAAACATTACTTGAGTACAATGCTGATTGCAGTGCCAAGGACGATGAGGGTATGACTCCCCTAAATCACCTTTCAAAAGGCCGTGAAAATGGAAAGCTGCAGGCACTATTACTGTCTCACTTTGAAGAGCAGAGGAGAAGAAGAGCAATTGAAGCATGCAGCGAAACTAAAGCTAAGATGGATGAACTTGAAAATGAATTATCAAATATTGTTGGTTTGCATGAGCTCAAGGTACAACTACAGAAATGGGCAAAGGGGATGCTTTTGGATGAGAGGCGTAAGGCCCTTGGGCTGAAAGTTGGCACAAGGAGACCCCCTCATATGGCGTTTCTTGGCAATCCTGGAACAGGTAAGACAATGGTAGCTCGAATTCTTGGAAGATTACTCCATATGGTGGGAATTCTACCTACTGACAAAGTAACAGAAGTACAGCGAACTGATTTGGTTGGGGAATTTGTTGGTCATACTGGACCAAAAACTAGGAGGAAGATTAAAGACGCAGAGGGAGGAATTCTTTTTGTAGATGAAGCTTATCGACTAATACCTATGCAGAAGGCAGACGATAAAGACTATGGTTTGGAAGCATTGGAAGAGATCATGTCTGTCATGGATAGTGGAAAAATTGTAGTCATATTTGCGGGATATAGCGAACCAATGAAACGAGTAATTGCTTCCAATGAAGGTTTCTGCCGGCGTGTGACCAAGTTTTTCAATTTTAGCGACTTCAGTTCTGAAGACCTAGCAAAGATTCTCCATATCAAGATGAACAATCAAACAGAGGAAAGCTTGTTGTATGGGTTTCAGTTACATTCTTCTTGCAGTGTAGAAGCGGTTGCAGAACTGATTCGACGAGAGACAACAGAAAAGCAGTGTAAGGAGATGAATGGAGGTTTAGTGGATACGATGTTAGTTAATGCTAGAGAAAGTTTGGACCTTAGGCTCAATTTTGACTGTATAGACACAGATGAACTTAGAACAATCACCCTAGAGGATTTACAAGCAGGCCTTCGGATTTTGTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Ank Ank_2 Ank_3

Protein Analysis

480

Amino Acids

53.86

Weight (kDa)

6.53

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24530 AT3G24530 AT3G24530
fragaria_vesca FvH4_1g04710
malus_domestica MD02G1046000.v1.1 MD15G1184200.v1.1
prunus_persica Prupe.7G232000_v2.0.a1 Prupe.7G232000_v2.0.a1
pyrus_communis pycom02g03840 pycom02g03850 pycom15g16580
rosa_chinensis RchiOBHm_Chr2g0090311
rosa_laevigata RLG00000016097
rosa_multiflora Rmu_co8096142.1_g000001 Rmu_sc0006235.1_g000004
rosa_roxburghii Rroxscaffold_2G00151290
rosa_rugosa Rorug02G0006500
rosa_samantha Rh2CG053200 Rh2DG052300
rosa_wichuraiana Rw2G004450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 808
AciI CCGC 2 cut(s) 1052, 1244
AcsI RAATTY 5 cut(s) 194, 783, 813, 866, 924
AcuI CTGAAG 2 cut(s) 1123, 1167
AfaI GTAC 4 cut(s) 383, 431, 648, 843
AfiI CCNNNNNNNGG 3 cut(s) 736, 761, 808
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 6 cut(s) 335, 489, 539, 566, 605, 1126
AjnI CCWGG 2 cut(s) 239, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AluBI AGCT 8 cut(s) 94, 278, 511, 587, 640, 779, 944, 1200
AluI AGCT 8 cut(s) 94, 278, 511, 587, 640, 779, 944, 1200
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 3 cut(s) 534, 718, 1262
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 4 cut(s) 215, 493, 696, 1417
ApeKI GCWGC 5 cut(s) 94, 275, 299, 511, 573
ApoI RAATTY 5 cut(s) 194, 783, 813, 866, 924
Asp700I GAANNNNTTC 1 cut(s) 1257
AspS9I GGNCC 5 cut(s) 73, 215, 697, 884, 1345
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 37, 473, 1387
AvaII GGWCC 3 cut(s) 73, 884, 1345
AxyI CCTNAGG 1 cut(s) 1349
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 1155
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 5 cut(s) 81, 286, 287, 498, 585
BccI CCATC 3 cut(s) 118, 143, 586
BceAI ACGGC 1 cut(s) 480
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 241, 756
BciVI GTATCC 2 cut(s) 21, 1306
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 534, 718, 1262
BfaI CTAG 4 cut(s) 894, 1154, 1332, 1400
BfmI CTRYAG 2 cut(s) 512, 653
BfuI GTATCC 2 cut(s) 21, 1306
BglI GCCNNNNNGGC 1 cut(s) 140
BglII AGATCT 1 cut(s) 29
BisI GCNGC 5 cut(s) 95, 276, 300, 512, 574
BlsI GCNGC 5 cut(s) 96, 277, 301, 513, 575
Bme1390I CCNGG 3 cut(s) 101, 241, 756
Bme18I GGWCC 3 cut(s) 73, 884, 1345
BmgT120I GGNCC 5 cut(s) 73, 215, 697, 884, 1345
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 3 cut(s) 101, 241, 756
BmsI GCATC 3 cut(s) 278, 286, 663
BpiI GAAGAC 1 cut(s) 1155
BplI GAGNNNNNCTC 2 cut(s) 715, 747
BpuEI CTTGAG 2 cut(s) 446, 626
BpuMI CCSGG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 2 cut(s) 450, 700
BsaXI ACNNNNNCTCC 2 cut(s) 1293, 1323
Bsc4I CCNNNNNNNGG 3 cut(s) 736, 761, 808
Bse118I RCCGGY 1 cut(s) 1104
Bse1I ACTGG 1 cut(s) 886
Bse21I CCTNAGG 1 cut(s) 1349
Bse3DI GCAATG 2 cut(s) 263, 298
BseBI CCWGG 2 cut(s) 241, 756
BseDI CCNNGG 2 cut(s) 450, 700
BseGI GGATG 4 cut(s) 293, 601, 678, 688
BseLI CCNNNNNNNGG 3 cut(s) 736, 761, 808
BseMI GCAATG 2 cut(s) 263, 298
BseMII CTCAG 2 cut(s) 77, 174
BseNI ACTGG 1 cut(s) 886
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 5 cut(s) 81, 286, 287, 498, 585
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 4 cut(s) 217, 495, 698, 1419
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 100, 1105
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 736, 761, 808
BsmAI GTCTC 3 cut(s) 534, 718, 1262
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 4 cut(s) 217, 495, 698, 1419
Bso31I GGTCTC 1 cut(s) 718
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 3 cut(s) 16, 29, 1008
BspACI CCGC 2 cut(s) 1052, 1244
BspANI GGCC 4 cut(s) 217, 495, 698, 1419
BspCNI CTCAG 2 cut(s) 76, 175
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 516
BspQI GCTCTTC 2 cut(s) 534, 550
BspTNI GGTCTC 1 cut(s) 718
BsrDI GCAATG 2 cut(s) 263, 298
BsrFI RCCGGY 1 cut(s) 1104
BsrI ACTGG 1 cut(s) 886
BssAI RCCGGY 1 cut(s) 1104
BssECI CCNNGG 2 cut(s) 450, 700
BssMI GATC 3 cut(s) 16, 29, 1008
BssT1I CCWWGG 2 cut(s) 450, 700
Bst2UI CCWGG 2 cut(s) 241, 756
Bst4CI ACNGT 6 cut(s) 24, 306, 323, 412, 528, 1367
Bst6I CTCTTC 5 cut(s) 120, 393, 534, 550, 999
BstC8I GCNNGC 4 cut(s) 516, 571, 1106, 1417
BstDEI CTNAG 6 cut(s) 63, 183, 279, 588, 1349, 1385
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 4 cut(s) 293, 601, 678, 688
BstKTI GATC 3 cut(s) 19, 32, 1011
BstMAI GTCTC 3 cut(s) 534, 718, 1262
BstMBI GATC 3 cut(s) 16, 29, 1008
BstMWI GCNNNNNNNGC 2 cut(s) 140, 566
BstNI CCWGG 2 cut(s) 241, 756
BstNSI RCATGY 2 cut(s) 250, 573
BstSCI CCNGG 3 cut(s) 99, 239, 754
BstSFI CTRYAG 2 cut(s) 512, 653
BstV1I GCAGC 5 cut(s) 81, 286, 287, 498, 585
BstV2I GAAGAC 1 cut(s) 1155
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu36I CCTNAGG 1 cut(s) 1349
BsuI GTATCC 2 cut(s) 21, 1306
BsuRI GGCC 4 cut(s) 217, 495, 698, 1419
BtsCI GGATG 4 cut(s) 293, 601, 678, 688
BtsI GCAGTG 3 cut(s) 451, 1240, 1289
BtsIMutI CAGTG 3 cut(s) 451, 1240, 1289
Cac8I GCNNGC 4 cut(s) 516, 571, 1106, 1417
CaiI CAGNNNCTG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 1104
Cfr13I GGNCC 5 cut(s) 73, 215, 697, 884, 1345
CseI GACGC 1 cut(s) 920
Csp6I GTAC 4 cut(s) 382, 430, 647, 842
CviAII CATG 9 cut(s) 53, 139, 158, 247, 271, 570, 635, 1012, 1021
CviQI GTAC 4 cut(s) 382, 430, 647, 842
DdeI CTNAG 6 cut(s) 63, 183, 279, 588, 1349, 1385
DpnI GATC 3 cut(s) 18, 31, 1010
DpnII GATC 3 cut(s) 16, 29, 1008
Eam1104I CTCTTC 5 cut(s) 120, 393, 534, 550, 999
EarI CTCTTC 5 cut(s) 120, 393, 534, 550, 999
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 450, 700
Eco147I AGGCCT 1 cut(s) 1419
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 3 cut(s) 73, 884, 1345
Eco53kI GAGCTC 1 cut(s) 640
Eco57I CTGAAG 2 cut(s) 1123, 1167
Eco81I CCTNAGG 1 cut(s) 1349
EcoICRI GAGCTC 1 cut(s) 640
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 2 cut(s) 73, 697
EcoRI GAATTC 3 cut(s) 783, 813, 924
EcoRII CCWGG 2 cut(s) 239, 754
EcoT14I CCWWGG 2 cut(s) 450, 700
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 2 cut(s) 450, 700
FaeI CATG 9 cut(s) 56, 142, 161, 250, 274, 573, 638, 1015, 1024
FalI AAGNNNNNCTT 2 cut(s) 1404, 1436
FaqI GGGAC 1 cut(s) 86
FatI CATG 9 cut(s) 52, 138, 157, 246, 270, 569, 634, 1011, 1020
FauI CCCGC 1 cut(s) 1045
FauNDI CATATG 2 cut(s) 735, 804
Fnu4HI GCNGC 5 cut(s) 95, 276, 300, 512, 574
FokI GGATG 4 cut(s) 300, 608, 685, 695
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 5 cut(s) 95, 276, 300, 512, 574
FspBI CTAG 4 cut(s) 894, 1154, 1332, 1400
GluI GCNGC 5 cut(s) 95, 276, 300, 512, 574
HaeIII GGCC 4 cut(s) 217, 495, 698, 1419
HapII CCGG 2 cut(s) 100, 1105
HgaI GACGC 1 cut(s) 920
Hin1II CATG 9 cut(s) 56, 142, 161, 250, 274, 573, 638, 1015, 1024
HindIII AAGCTT 2 cut(s) 942, 1198
HinfI GANTC 3 cut(s) 469, 1162, 1258
HpaII CCGG 2 cut(s) 100, 1105
HphI GGTGA 3 cut(s) 37, 473, 1387
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 90, 1147, 1425
Hpy188III TCNNGA 4 cut(s) 14, 27, 203, 1174
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 1266
HpyAV CCTTC 4 cut(s) 86, 961, 1088, 1430
HpyCH4III ACNGT 6 cut(s) 24, 306, 323, 412, 528, 1367
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 566
HpyF3I CTNAG 6 cut(s) 63, 183, 279, 588, 1349, 1385
Hsp92II CATG 9 cut(s) 56, 142, 161, 250, 274, 573, 638, 1015, 1024
KroI GCCGGC 1 cut(s) 1104
KroNI GCCGGC 1 cut(s) 1106
Kzo9I GATC 3 cut(s) 16, 29, 1008
LguI GCTCTTC 2 cut(s) 534, 550
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 5 cut(s) 81, 286, 287, 498, 585
LweI GCATC 3 cut(s) 278, 286, 663
MaeI CTAG 4 cut(s) 894, 1154, 1332, 1400
MaeIII GTNAC 6 cut(s) 43, 170, 832, 1111, 1218, 1431
MalI GATC 3 cut(s) 18, 31, 1010
MboI GATC 3 cut(s) 16, 29, 1008
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 642
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 213
MroNI GCCGGC 1 cut(s) 1104
MroXI GAANNNNTTC 1 cut(s) 1257
MseI TTAA 3 cut(s) 192, 906, 1326
MspI CCGG 2 cut(s) 100, 1105
MspR9I CCNGG 3 cut(s) 101, 241, 756
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 2 cut(s) 241, 756
MwoI GCNNNNNNNGC 2 cut(s) 140, 566
NaeI GCCGGC 1 cut(s) 1106
NciI CCSGG 1 cut(s) 101
NdeI CATATG 2 cut(s) 735, 804
NdeII GATC 3 cut(s) 16, 29, 1008
NgoMIV GCCGGC 1 cut(s) 1104
NlaIII CATG 9 cut(s) 56, 142, 161, 250, 274, 573, 638, 1015, 1024
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 3 cut(s) 43, 1111, 1431
NspI RCATGY 2 cut(s) 250, 573
PaeI GCATGC 1 cut(s) 573
PceI AGGCCT 1 cut(s) 1419
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 2 cut(s) 534, 550
PdiI GCCGGC 1 cut(s) 1106
PdmI GAANNNNTTC 1 cut(s) 1257
PfeI GAWTC 2 cut(s) 1162, 1258
PflMI CCANNNNNTGG 1 cut(s) 808
PfoI TCCNGGA 2 cut(s) 99, 754
PkrI GCNGC 5 cut(s) 96, 277, 301, 513, 575
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 1 cut(s) 73
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 239, 754
PspGI CCWGG 2 cut(s) 239, 754
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 5 cut(s) 73, 215, 697, 884, 1345
PspPPI RGGWCCY 1 cut(s) 73
PstI CTGCAG 1 cut(s) 516
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 4 cut(s) 383, 431, 648, 843
RsaNI GTAC 4 cut(s) 382, 430, 647, 842
SacI GAGCTC 1 cut(s) 642
SapI GCTCTTC 2 cut(s) 534, 550
SaqAI TTAA 3 cut(s) 192, 906, 1326
SatI GCNGC 5 cut(s) 95, 276, 300, 512, 574
Sau3AI GATC 3 cut(s) 16, 29, 1008
Sau96I GGNCC 5 cut(s) 73, 215, 697, 884, 1345
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 3 cut(s) 101, 241, 756
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 3 cut(s) 278, 286, 663
SfcI CTRYAG 2 cut(s) 512, 653
SinI GGWCC 3 cut(s) 73, 884, 1345
SmlI CTYRAG 2 cut(s) 425, 641
SmoI CTYRAG 2 cut(s) 425, 641
SphI GCATGC 1 cut(s) 573
SseBI AGGCCT 1 cut(s) 1419
SsiI CCGC 2 cut(s) 1052, 1244
SspI AATATT 1 cut(s) 622
SspMI CTAG 4 cut(s) 894, 1154, 1332, 1400
SstI GAGCTC 1 cut(s) 642
StuI AGGCCT 1 cut(s) 1419
StyD4I CCNGG 3 cut(s) 99, 239, 754
StyI CCWWGG 2 cut(s) 450, 700
TaaI ACNGT 6 cut(s) 24, 306, 323, 412, 528, 1367
TaqI TCGA 4 cut(s) 391, 781, 949, 1261
TatI WGTACW 2 cut(s) 429, 841
TfiI GAWTC 2 cut(s) 1162, 1258
Tru1I TTAA 3 cut(s) 192, 906, 1326
Tru9I TTAA 3 cut(s) 192, 906, 1326
TscAI CASTG 3 cut(s) 451, 1240, 1289
TseFI GTSAC 3 cut(s) 43, 1111, 1431
TseI GCWGC 5 cut(s) 94, 275, 299, 511, 573
Tsp45I GTSAC 3 cut(s) 43, 1111, 1431
TspRI CASTG 3 cut(s) 451, 1240, 1289
Van91I CCANNNNNTGG 1 cut(s) 808
VpaK11BI GGWCC 3 cut(s) 73, 884, 1345
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 5 cut(s) 194, 783, 813, 866, 924
XceI RCATGY 2 cut(s) 250, 573
XmnI GAANNNNTTC 1 cut(s) 1257
XspI CTAG 4 cut(s) 894, 1154, 1332, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.