Ankyrin repeats (many copies)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24530 AT3G24530 AT3G24530 |
| fragaria_vesca | FvH4_1g04710 |
| malus_domestica | MD02G1046000.v1.1 MD15G1184200.v1.1 |
| prunus_persica | Prupe.7G232000_v2.0.a1 Prupe.7G232000_v2.0.a1 |
| pyrus_communis | pycom02g03840 pycom02g03850 pycom15g16580 |
| rosa_chinensis | RchiOBHm_Chr2g0090311 |
| rosa_laevigata | RLG00000016097 |
| rosa_multiflora | Rmu_co8096142.1_g000001 Rmu_sc0006235.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00151290 |
| rosa_rugosa | Rorug02G0006500 |
| rosa_samantha | Rh2CG053200 Rh2DG052300 |
| rosa_wichuraiana | Rw2G004450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 113, 145 |
| AluBI | AGCT | 2 cut(s) | 24, 239 |
| AluI | AGCT | 2 cut(s) | 24, 239 |
| Alw26I | GTCTC | 1 cut(s) | 86 |
| AoxI | GGCC | 1 cut(s) | 241 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AvaII | GGWCC | 1 cut(s) | 169 |
| AxyI | CCTNAGG | 1 cut(s) | 173 |
| BciVI | GTATCC | 1 cut(s) | 130 |
| BcoDI | GTCTC | 1 cut(s) | 86 |
| BfaI | CTAG | 2 cut(s) | 156, 224 |
| BfuI | GTATCC | 1 cut(s) | 130 |
| BglII | AGATCT | 1 cut(s) | 76 |
| Bme18I | GGWCC | 1 cut(s) | 169 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| BsaI | GGTCTC | 1 cut(s) | 86 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 11, 41, 117, 147 |
| Bse1I | ACTGG | 1 cut(s) | 40 |
| Bse21I | CCTNAGG | 1 cut(s) | 173 |
| BseNI | ACTGG | 1 cut(s) | 40 |
| BseRI | GAGGAG | 1 cut(s) | 32 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BsmAI | GTCTC | 1 cut(s) | 86 |
| BsmI | GAATGC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 243 |
| Bso31I | GGTCTC | 1 cut(s) | 86 |
| Bsp143I | GATC | 2 cut(s) | 76, 81 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BspTNI | GGTCTC | 1 cut(s) | 86 |
| BsrI | ACTGG | 1 cut(s) | 40 |
| BssMI | GATC | 2 cut(s) | 76, 81 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 1 cut(s) | 241 |
| BstDEI | CTNAG | 1 cut(s) | 173 |
| BstKTI | GATC | 2 cut(s) | 79, 84 |
| BstMAI | GTCTC | 1 cut(s) | 86 |
| BstMBI | GATC | 2 cut(s) | 76, 81 |
| BstX2I | RGATCY | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 76 |
| Bsu36I | CCTNAGG | 1 cut(s) | 173 |
| BsuI | GTATCC | 1 cut(s) | 130 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BtsI | GCAGTG | 1 cut(s) | 113 |
| BtsIMutI | CAGTG | 1 cut(s) | 113 |
| Cac8I | GCNNGC | 1 cut(s) | 241 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| CviAII | CATG | 1 cut(s) | 54 |
| CviJI | RGCY | 4 cut(s) | 24, 178, 239, 243 |
| CviKI_1 | RGCY | 4 cut(s) | 24, 178, 239, 243 |
| DdeI | CTNAG | 1 cut(s) | 173 |
| DpnI | GATC | 2 cut(s) | 78, 83 |
| DpnII | GATC | 2 cut(s) | 76, 81 |
| Eam1104I | CTCTTC | 1 cut(s) | 55 |
| EarI | CTCTTC | 1 cut(s) | 55 |
| Eco31I | GGTCTC | 1 cut(s) | 86 |
| Eco47I | GGWCC | 1 cut(s) | 169 |
| Eco81I | CCTNAGG | 1 cut(s) | 173 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 1 cut(s) | 57 |
| FaiI | YATR | 6 cut(s) | 6, 33, 55, 62, 143, 194 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 228, 260 |
| FatI | CATG | 1 cut(s) | 53 |
| FspBI | CTAG | 2 cut(s) | 156, 224 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| Hin1II | CATG | 1 cut(s) | 57 |
| HinfI | GANTC | 1 cut(s) | 36 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 81, 86, 249 |
| HpyAV | CCTTC | 1 cut(s) | 254 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 57, 74 |
| HpyF3I | CTNAG | 1 cut(s) | 173 |
| Hsp92II | CATG | 1 cut(s) | 57 |
| Kzo9I | GATC | 2 cut(s) | 76, 81 |
| LpnPI | CCDG | 2 cut(s) | 53, 225 |
| MaeI | CTAG | 2 cut(s) | 156, 224 |
| MaeIII | GTNAC | 2 cut(s) | 42, 255 |
| MalI | GATC | 2 cut(s) | 78, 83 |
| MboI | GATC | 2 cut(s) | 76, 81 |
| MboII | GAAGA | 2 cut(s) | 42, 215 |
| MflI | RGATCY | 1 cut(s) | 76 |
| MnlI | CCTC | 3 cut(s) | 10, 119, 220 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| Mva1269I | GAATGC | 1 cut(s) | 157 |
| NdeII | GATC | 2 cut(s) | 76, 81 |
| NlaIII | CATG | 1 cut(s) | 57 |
| NmuCI | GTSAC | 1 cut(s) | 255 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PctI | GAATGC | 1 cut(s) | 157 |
| PfeI | GAWTC | 1 cut(s) | 36 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| PsuI | RGATCY | 1 cut(s) | 76 |
| Sau3AI | GATC | 2 cut(s) | 76, 81 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| SetI | ASST | 4 cut(s) | 26, 130, 174, 241 |
| SinI | GGWCC | 1 cut(s) | 169 |
| SspMI | CTAG | 2 cut(s) | 156, 224 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaqI | TCGA | 1 cut(s) | 180 |
| TfiI | GAWTC | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 113 |
| TseFI | GTSAC | 1 cut(s) | 255 |
| Tsp45I | GTSAC | 1 cut(s) | 255 |
| TspDTI | ATGAA | 2 cut(s) | 42, 134 |
| TspGWI | ACGGA | 2 cut(s) | 138, 215 |
| TspRI | CASTG | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 1 cut(s) | 169 |
| XspI | CTAG | 2 cut(s) | 156, 224 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |