Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012807

Physical Location & Seq

Genomic Coordinates Reverse (-)

17249632 .. 17252691

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1214800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGCCCGTGAACCTGACGCCGAACGCCATCGCGGCGGTGATAGGCGGCGACTTGAATTTGAAGCCGTTGGTGCAGGTGGTCGATATTAAGCTCATCGGCACGCAGGAGAGGTACCGATTCATGGTCTCCGACGGCGTTTCGTCTCAGCACGCCATGATCTCTTCGCAGCTCAACGACCGAATCAAGACCAACCGTGTCCAGATAGGTTCCGTCGTCCAGCTCACCGAGTACATTTGCACCGTTCTCCAGAACCGCCAGGTTATTGTTGTGCTGAACATGGAAACTATAATACTGAACTGTGACATTATTGGGAATCCAAAACCATATGGTGCACCTAATTCAGATACTCCAAATGCATTGCCTAATGGCAGTTTTCAGCAGTCAGCCAGTAATCGTATGACTTCGCAAAATCCTATTCACAATGGGCAGAATATCAGACCTACTTTTCATTCTGAGAGGCCGAATGTCAGACCTCGTCTTCATCCTGAAAGCTCTGCACACAATGCGCCAAATATTCGAGCTACTGTTCAACCTCCTTACCAACCACCTCCACAGTACAAAAATCGTGGTCCAATCATGAAGAACGAGGCACCAGCACGGATCATTCCCATTAACGCTCTGAATCCTTATCAGGGAAGATGGGCTATCAAGGCAAGGGTCACAGCAAAAGGGGACCCCCGTCGGTATAACAATGCTAAAGGAGACGGTAAAGTTTTCTCTTTCGACCTGCTTGACTCAGGAGGGGAAATAAGAATTACCTGCTTCAATGCTGTTCTTGACCGCTTCTATGATATTATTGAGGTTGGCAGAGTTTACTTGATTTCAAAGGGAAGCTTGAAACCTGCACAGAAGAATTTCAACCATCTGAAGAATGACTGGGAGATAACTTTGGATGCAAGTTCAACTGTGGACCTCTGCCCTGATGAAGATGGTTCCATACCAGCGCAAAACTTCGACTTCAGGCCAATTAGTGAAATTGAAAATGCTGAAAGTAATTCTATTGTTGATGTTATTGGTATTGTGATATCTGTCAATCCTTCTGTTCCTATCATGAGGAAGAATGGTATGGAAACTCAGAGAAGAATTCTGAATCTAAAGGATTGGTCGGGCAAGAGCGTTGAGCTAACCCTTTGGGGGGATGTCTGCAACAGGGAAGGTCAAAAGCTTGAAGAGATGTTGGCTTCTGGGTTTTCCCCAGTTTTAGCTGTTAAAGCTGGGAAGATTAATGATTTCAGTGGGAAGTCCGTTGGAACAATTCATTCTACACAACTATTCATAAACCCAGAAATTTCTGATGCTCTTACCTTGAGAGACTGGTTTGACCGAGGGGGCAAGGATACTGCTTCTGTCTCCATTTCTAAAGACTTTGTTCCGGGAGGAACTAAGAATGAGATACGCAAAACCGTTTCTCAGATTAAGGATGAAGGTCTTGGAAGATCAGATAAGCCAGACTGGGTCACTGTGAAGGCGACAATATCTTTCATTAAGACAGATTCTTTCTGTTACACAGCCTGTCCCTTGATGATTGGAGATAGGCAGTGCAACAAAAAGGTGTCGAGGTCAGGAAACAGAGGATGGCAGTGTGACAGGTGCAATCAAGAATTTGAGGAGTGTGATTATCGGTATCTTCTTCAGGCCCAAATTCAAGACCATACTGGATTGACTTGGGCGACGGCTTTTCAGGAAACTGGGGAAGAGATCTTGGGTTGCTCAGCAAAGGAGCTGTACTTGTTGAAGTACGAAGAGCAGGATGATTCAAGATTTGGAGACATAGTCCGGAGCAGTATCTTTAACCGGTTTCTGTTCAAGCTTAAAATCAAAGAGGAGATGTATGGCGATGAGCAGAGGGTGAAGATCACCATAGTGAAGGCGGATAAGGAGAACTGTTCTTCAGAGAGCAGATACATGCTTGATAGGATTTCAAAATATTCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

646

Amino Acids

72.35

Weight (kDa)

8.41

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	5 - 96	1.7e-26	Replication factor-A protein 1, N-terminal domain
tRNA_anti-codon	PF01336	215 - 294	2.8e-08	OB-fold nucleic acid binding domain
REPA_OB_2	PF16900	323 - 427	5.5e-28	Replication protein A OB domain
Rep_fac-A_C	PF08646	485 - 636	7.4e-49	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06510 AT2G06510
fragaria_vesca	FvH4_1g08261 FvH4_1g08261 FvH4_1g08261
malus_domestica	MD02G1087200.v1.1 MD15G1214800.v1.1
prunus_persica	Prupe.7G202500_v2.0.a1
pyrus_communis	pycom15g19050
rosa_chinensis	RchiOBHm_Chr2g0094351
rosa_laevigata	RLG00000016482
rosa_multiflora	Rmu_ssc0000229.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147210
rosa_rugosa	Rorug02G0043400
rosa_samantha	Rh2AG091300 Rh2BG091000 Rh2CG093600 Rh2DG090000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	4 cut(s)	64, 735, 767, 850
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	111, 589
AccII	CGCG	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	1776
AciI	CCGC	6 cut(s)	32, 35, 45, 253, 781, 1871
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	6 cut(s)	55, 853, 1083, 1287, 1601, 1641
AcuI	CTGAAG	4 cut(s)	887, 943, 1616, 1875
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	5 cut(s)	113, 230, 557, 1727, 1739
AfiI	CCNNNNNNNGG	4 cut(s)	121, 632, 1134, 1135
AgeI	ACCGGT	1 cut(s)	1794
AjnI	CCWGG	1 cut(s)	255
AleI	CACNNNNGTG	1 cut(s)	1862
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	6 cut(s)	130, 147, 696, 1305, 1354, 1761
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	1776
AoxI	GGCC	3 cut(s)	458, 962, 1635
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	6 cut(s)	55, 853, 1083, 1287, 1601, 1641
AseI	ATTAAT	1 cut(s)	1224
AsiGI	ACCGGT	1 cut(s)	1794
Asp700I	GAANNNNTTC	1 cut(s)	854
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	508, 946
AspS9I	GGNCC	4 cut(s)	569, 673, 910, 1636
AsuC2I	CCSGG	1 cut(s)	1374
AsuHPI	GGTGA	4 cut(s)	49, 214, 1849, 1861
AvaII	GGWCC	3 cut(s)	569, 673, 910
BaeGI	GKGCMC	1 cut(s)	334
BanI	GGYRCC	2 cut(s)	111, 589
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	5 cut(s)	35, 633, 870, 923, 1569
BceAI	ACGGC	3 cut(s)	49, 148, 1689
BciT130I	CCWGG	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	1330
BcnI	CCSGG	1 cut(s)	1374
BcoDI	GTCTC	6 cut(s)	130, 147, 696, 1305, 1354, 1761
BfaI	CTAG	1 cut(s)	1932
BfuAI	ACCTGC	4 cut(s)	64, 735, 767, 850
BfuI	GTATCC	1 cut(s)	1330
BglI	GCCNNNNNGGC	1 cut(s)	32
BglII	AGATCT	1 cut(s)	1698
BisI	GCNGC	3 cut(s)	33, 46, 167
BlpI	GCTNAGC	1 cut(s)	1711
BlsI	GCNGC	3 cut(s)	34, 47, 168
Bme1390I	CCNGG	2 cut(s)	257, 1374
Bme18I	GGWCC	3 cut(s)	569, 673, 910
BmgT120I	GGNCC	4 cut(s)	569, 673, 910, 1636
BmiI	GGNNCC	6 cut(s)	113, 208, 591, 674, 675, 934
BmrFI	CCNGG	2 cut(s)	257, 1374
BmrI	ACTGGG	4 cut(s)	886, 1190, 1462, 1698
BmsI	GCATC	2 cut(s)	883, 1285
BmuI	ACTGGG	4 cut(s)	886, 1190, 1462, 1698
BoxI	GACNNNNGTC	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	1711
BpuEI	CTTGAG	1 cut(s)	1327
BpuMI	CCSGG	1 cut(s)	1374
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	1324
BsaWI	WCCGGW	2 cut(s)	1776, 1794
BsaXI	ACNNNNNCTCC	2 cut(s)	1758, 1788
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 632, 1134, 1135
Bse118I	RCCGGY	1 cut(s)	1794
Bse1I	ACTGG	7 cut(s)	387, 881, 1196, 1319, 1457, 1660, 1693
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	1776
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	1324
BseGI	GGATG	6 cut(s)	481, 898, 1144, 1426, 1580, 1756
BseLI	CCNNNNNNNGG	4 cut(s)	121, 632, 1134, 1135
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	6 cut(s)	158, 444, 750, 1088, 1424, 1725
BseNI	ACTGG	7 cut(s)	387, 881, 1196, 1319, 1457, 1660, 1693
BseRI	GAGGAG	2 cut(s)	1622, 1838
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	1214
BsgI	GTGCAG	3 cut(s)	92, 480, 828
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	460, 964, 1637
BshNI	GGYRCC	2 cut(s)	111, 589
BshTI	ACCGGT	1 cut(s)	1794
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	1373, 1777, 1795
BslFI	GGGAC	2 cut(s)	686, 1500
BslI	CCNNNNNNNGG	4 cut(s)	121, 632, 1134, 1135
BsmAI	GTCTC	6 cut(s)	130, 147, 696, 1305, 1354, 1761
BsmBI	CGTCTC	2 cut(s)	147, 696
BsmFI	GGGAC	2 cut(s)	686, 1500
BsnI	GGCC	3 cut(s)	460, 964, 1637
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp13I	TCCGGA	1 cut(s)	1776
Bsp143I	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
Bsp1720I	GCTNAGC	1 cut(s)	1711
BspACI	CCGC	6 cut(s)	32, 35, 45, 253, 781, 1871
BspANI	GGCC	3 cut(s)	460, 964, 1637
BspCNI	CTCAG	6 cut(s)	157, 445, 749, 1087, 1423, 1724
BspEI	TCCGGA	1 cut(s)	1776
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	2 cut(s)	576, 1050
BspLI	GGNNCC	6 cut(s)	113, 208, 591, 674, 675, 934
BspMI	ACCTGC	4 cut(s)	64, 735, 767, 850
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	1737
BspT107I	GGYRCC	2 cut(s)	111, 589
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	1794
BsrI	ACTGG	7 cut(s)	387, 881, 1196, 1319, 1457, 1660, 1693
BssAI	RCCGGY	1 cut(s)	1794
BssECI	CCNNGG	1 cut(s)	1324
BssMI	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	4 cut(s)	166, 1164, 1689, 1737
BstACI	GRCGYC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	101, 150
BstDEI	CTNAG	7 cut(s)	144, 453, 736, 1074, 1383, 1410, 1711
BstF5I	GGATG	6 cut(s)	481, 898, 1144, 1426, 1580, 1756
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	508, 946
BstKTI	GATC	5 cut(s)	159, 603, 1439, 1701, 1857
BstMAI	GTCTC	6 cut(s)	130, 147, 696, 1305, 1354, 1761
BstMBI	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 70, 503, 650, 1211
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	1909
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	255, 1372
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	1698
BstYI	RGATCY	1 cut(s)	1698
BsuI	GTATCC	1 cut(s)	1330
BsuRI	GGCC	3 cut(s)	460, 964, 1637
BtgZI	GCGATG	2 cut(s)	13, 1851
BtsCI	GGATG	6 cut(s)	481, 898, 1144, 1426, 1580, 1756
BtsI	GCAGTG	2 cut(s)	1544, 1586
BtsIMutI	CAGTG	4 cut(s)	1240, 1458, 1544, 1586
BveI	ACCTGC	4 cut(s)	64, 735, 767, 850
Cac8I	GCNNGC	2 cut(s)	101, 150
CciI	TCATGA	2 cut(s)	576, 1050
CfoI	GCGC	2 cut(s)	508, 946
Cfr10I	RCCGGY	1 cut(s)	1794
Cfr13I	GGNCC	4 cut(s)	569, 673, 910, 1636
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	5 cut(s)	112, 229, 556, 1726, 1738
CspAI	ACCGGT	1 cut(s)	1794
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	6 cut(s)	121, 154, 277, 577, 1051, 1906
CviQI	GTAC	5 cut(s)	112, 229, 556, 1726, 1738
DdeI	CTNAG	7 cut(s)	144, 453, 736, 1074, 1383, 1410, 1711
DpnI	GATC	5 cut(s)	158, 602, 1438, 1700, 1856
DpnII	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
Eam1104I	CTCTTC	4 cut(s)	166, 1164, 1689, 1737
EarI	CTCTTC	4 cut(s)	166, 1164, 1689, 1737
EciI	GGCGGA	1 cut(s)	1886
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	1026
Eco47I	GGWCC	3 cut(s)	569, 673, 910
Eco57I	CTGAAG	4 cut(s)	887, 943, 1616, 1875
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	1083
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	1026
EcoT22I	ATGCAT	1 cut(s)	358
Esp3I	CGTCTC	2 cut(s)	147, 696
FaeI	CATG	6 cut(s)	124, 157, 280, 580, 1054, 1909
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FaqI	GGGAC	2 cut(s)	686, 1500
FatI	CATG	6 cut(s)	120, 153, 276, 576, 1050, 1905
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	33, 46, 167
FokI	GGATG	6 cut(s)	468, 905, 1151, 1433, 1587, 1763
Fsp4HI	GCNGC	3 cut(s)	33, 46, 167
FspBI	CTAG	1 cut(s)	1932
GlaI	GCGC	2 cut(s)	507, 945
GluI	GCNGC	3 cut(s)	33, 46, 167
GsaI	CCCAGC	1 cut(s)	1218
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	460, 964, 1637
HapII	CCGG	3 cut(s)	1373, 1777, 1795
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	508, 946
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	6 cut(s)	124, 157, 280, 580, 1054, 1909
Hin6I	GCGC	2 cut(s)	506, 944
HinP1I	GCGC	2 cut(s)	506, 944
HindIII	AAGCTT	3 cut(s)	832, 1163, 1808
HinfI	GANTC	8 cut(s)	117, 180, 313, 622, 734, 1090, 1493, 1754
HpaII	CCGG	3 cut(s)	1373, 1777, 1795
HphI	GGTGA	4 cut(s)	49, 214, 1849, 1861
Hpy166II	GTNNAC	4 cut(s)	10, 332, 814, 910
Hpy8I	GTNNAC	4 cut(s)	10, 332, 814, 910
Hpy99I	CGWCG	4 cut(s)	134, 215, 684, 1675
HpyAV	CCTTC	5 cut(s)	1047, 1148, 1418, 1459, 1861
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 70, 503, 650, 1211
HpyF3I	CTNAG	7 cut(s)	144, 453, 736, 1074, 1383, 1410, 1711
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	6 cut(s)	124, 157, 280, 580, 1054, 1909
HspAI	GCGC	2 cut(s)	506, 944
KflI	GGGWCCC	1 cut(s)	673
Kpn2I	TCCGGA	1 cut(s)	1776
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
LguI	GCTCTTC	1 cut(s)	1737
LmnI	GCTCC	2 cut(s)	1720, 1779
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	883, 1285
MaeI	CTAG	1 cut(s)	1932
MaeIII	GTNAC	5 cut(s)	299, 658, 1456, 1502, 1583
MalI	GATC	5 cut(s)	158, 602, 1438, 1700, 1856
MboI	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
MflI	RGATCY	1 cut(s)	1698
MhlI	GDGCHC	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	2 cut(s)	153, 1228
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	1776
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	8 cut(s)	87, 612, 1209, 1224, 1416, 1485, 1791, 1812
MslI	CAYNNNNRTG	1 cut(s)	1862
MspI	CCGG	3 cut(s)	1373, 1777, 1795
MspR9I	CCNGG	2 cut(s)	257, 1374
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	32, 70, 503, 650, 1211
NciI	CCSGG	1 cut(s)	1374
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
NlaIII	CATG	6 cut(s)	124, 157, 280, 580, 1054, 1909
NlaIV	GGNNCC	6 cut(s)	113, 208, 591, 674, 675, 934
NmuCI	GTSAC	4 cut(s)	299, 658, 1456, 1583
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	1909
OliI	CACNNNNGTG	1 cut(s)	1862
PagI	TCATGA	2 cut(s)	576, 1050
PaqCI	CACCTGC	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	1737
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	7 cut(s)	117, 180, 313, 622, 1090, 1493, 1754
PflFI	GACNNNGTC	3 cut(s)	474, 1454, 1772
PfoI	TCCNGGA	1 cut(s)	1372
PinAI	ACCGGT	1 cut(s)	1794
PkrI	GCNGC	3 cut(s)	34, 47, 168
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
PpuMI	RGGWCCY	1 cut(s)	673
PshAI	GACNNNNGTC	1 cut(s)	678
PshBI	ATTAAT	1 cut(s)	1224
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	1214
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	6 cut(s)	113, 208, 591, 674, 675, 934
PspPI	GGNCC	4 cut(s)	569, 673, 910, 1636
PspPPI	RGGWCCY	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	1698
PsyI	GACNNNGTC	3 cut(s)	474, 1454, 1772
RsaI	GTAC	5 cut(s)	113, 230, 557, 1727, 1739
RsaNI	GTAC	5 cut(s)	112, 229, 556, 1726, 1738
RseI	CAYNNNNRTG	1 cut(s)	1862
SapI	GCTCTTC	1 cut(s)	1737
SaqAI	TTAA	8 cut(s)	87, 612, 1209, 1224, 1416, 1485, 1791, 1812
SatI	GCNGC	3 cut(s)	33, 46, 167
Sau3AI	GATC	5 cut(s)	156, 600, 1436, 1698, 1854
Sau96I	GGNCC	4 cut(s)	569, 673, 910, 1636
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	257, 1374
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	883, 1285
SinI	GGWCC	3 cut(s)	569, 673, 910
SmiMI	CAYNNNNRTG	1 cut(s)	1862
SmlI	CTYRAG	1 cut(s)	1306
SmoI	CTYRAG	1 cut(s)	1306
SsiI	CCGC	6 cut(s)	32, 35, 45, 253, 781, 1871
SspI	AATATT	2 cut(s)	514, 1928
SspMI	CTAG	1 cut(s)	1932
StyD4I	CCNGG	2 cut(s)	255, 1372
TaqI	TCGA	5 cut(s)	81, 517, 723, 954, 1556
TaqII	GACCGA	2 cut(s)	192, 1338
TatI	WGTACW	3 cut(s)	228, 555, 1725
TauI	GCSGC	2 cut(s)	35, 48
TfiI	GAWTC	7 cut(s)	117, 180, 313, 622, 1090, 1493, 1754
Tru1I	TTAA	8 cut(s)	87, 612, 1209, 1224, 1416, 1485, 1791, 1812
Tru9I	TTAA	8 cut(s)	87, 612, 1209, 1224, 1416, 1485, 1791, 1812
TscAI	CASTG	4 cut(s)	1240, 1465, 1544, 1586
TseFI	GTSAC	4 cut(s)	299, 658, 1456, 1583
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	4 cut(s)	299, 658, 1456, 1583
TspDTI	ATGAA	9 cut(s)	109, 437, 470, 593, 939, 1247, 1264, 1437, 1471
TspGWI	ACGGA	3 cut(s)	199, 613, 1234
TspRI	CASTG	4 cut(s)	1240, 1465, 1544, 1586
Tth111I	GACNNNGTC	3 cut(s)	474, 1454, 1772
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	3 cut(s)	569, 673, 910
VspI	ATTAAT	1 cut(s)	1224
XapI	RAATTY	6 cut(s)	55, 853, 1083, 1287, 1601, 1641
XceI	RCATGY	1 cut(s)	1909
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	1 cut(s)	1932
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.