Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012807

Physical Location & Seq

Genomic Coordinates Reverse (-)

6991710 .. 6994399

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGCCGGTGCAACTGACGCCGCACGCGGTATCCGCCATCATCGGCGGTGATCTCAACTTGAAGCCGCTGATGCAGGTCACCGATATCAAGCTCATCGGCTCGCAAGACAGGTACCGGCTCATGGTCTCCGATGGCGTTTGGTCTCAGCACGCCATGGTCGCCACTCAGCTCAACGAGCTAGTCAAGACCGGCCAGGTCAGGAAAGGCTCCGTCGTCCAGCTTACCGAGTACATTTGCAGCGAAGTCCAGAACCGCAAGATTATTATTGTGCTGAAAATGGAAACCATTGTACTGGACTCGGAGATCATTGGGAATCCAAAACAATATGTTGAGTCTGGTCCAACTGCTGAAACTGCATTGCCTAAGAACAATTTTCAGCAGTCTGCCTATGGCAACAATCATATGATTGGCCAAGGTCCTATTCCCAAATGGCAGAATCCCAGGCCCTCTTTTCATCCTGAAAACTTTGTTTCCAGTATGCCAAATGCCAGACCTACATTCCAATCTGAAAGCTCTTTTTACAATACTCCGAATCCCAGACCTACATTTCGTCCTGAAAGCTCAGCTCCCAGTGTGCCAAATTTCCGAGCTACTGTGCAGCCTTCCTACCAGCCACCTCCACAGTATAAAAATCGTGGCCCTGTGTTCAAGAATGAGGCGCCAGCACGTATTATACCTATTAATGCTCTAAATCCTTATCAGGGAAGGTGGGCTATCAAGGCAAGAGTCACTGCAAAAGGGGATCAGCGTCGGTATAACAATGCTCGAGGAGATGGTAAGGTTTTCTCTTTTGACCTCCTTGACTCTGAGGGTGGGGAAATACGAGTGACCTGCTTTAATGCCGTTCTTGACCGCTTTTATGATATTATTGAGGTTGGCAAAGTTTACTTGATATCAAAGGGTAGCTTAAGACCTGCGCAGAAGAACTTTAATCATCTGAAGAGTGACTGGGAGATAACTCTGGATGCAAGTTCAACAGTGGAACTGTGCCCTGATGAAGATGGTTCTATACCAGACCAGCTGTTTGACTTCAAGCCTATTAGTGCAATTGAGAATGCTGAGAGTAATTCTATACTTGATGTTATTGGCATTGTGACATCTGTCAACCCTTCTACTACTATCCTGAGAAAGAATGGTATGGAAACTCAGAGAAGAATTCTGCATCTGAAGGATTCGTCTGGTAGGAGCGTTGAGATAACCCTATGGGGGGAGGTCTGTAACAGGGAAGGTCAAAAGCTGGAAGAGATGTTGGCTTCTGGTGTGTTTCCAGTTTTAGCTGTCAAAGCTGGGAAGGTTAATGACTTCAGTGGGAAATCCATAGGAACAATTCATTCTACCCAGCTATACATTAACCCAGATTTGCCCGAGGCTCGTCAGGTGAGGGACTGGTTTGATCGAGGGGGAAAGGATGCTGCTTCCATGTCCATTTCTAAGGAATTTATGCCAGGAGGAGTAACTAAGAATGACATACGCAAAACTATTTCGCAGATCAAGAATGAAGGTCTTGGAAGATCAGATAAACCAGACTGGGTCACTGTGAGGGCCACCATATCTTTCATTAAAACCGATTCTTTCTGTTACACAGCATGCCCGTTGATGATTGGAGATAGACAGTGTAGCAAGAAAGTGTCGAGGTCAGGAGTTGGAGGATGGCAGTGTGACAGGTGCAATCAAGAATTTGAGGAGTGTGATTATAGATATCTTCTTCAAGCCCAAATTCAGGACCATACTGGATTGACTTGGGTGACGGCTTTTCAGGAATCAGGGGCAGAGATCTTGGGTTGCACAGCAAAGGAGTTGTACTTTTTGAAATACGAGGGGCAGGATGAGGAAAAGTTTGCAGACATAGTCCGGAGCAGTATTTTCAACCAGTTTATGTTCAAGCTTAAGATCAAAGAGGAGTTGTATGGCGATGAGCAGAGGGTGAAGATCACAGTGGTTAAGGCAGACACGGTGAACTATTCTGCAGAGAGCAGATACATGCTTGATGTGATTTCAAAGCTTTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

671

Amino Acids

75.02

Weight (kDa)

7.88

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	5 - 97	2.8e-28	Replication factor-A protein 1, N-terminal domain
tRNA_anti-codon	PF01336	239 - 318	4.2e-08	OB-fold nucleic acid binding domain
REPA_OB_2	PF16900	347 - 451	1.6e-28	Replication protein A OB domain
Rep_fac-A_C	PF08646	510 - 661	9.4e-51	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06510 AT2G06510
fragaria_vesca	FvH4_1g08261 FvH4_1g08261 FvH4_1g08261
malus_domestica	MD02G1087200.v1.1 MD15G1214800.v1.1
prunus_persica	Prupe.7G202500_v2.0.a1
pyrus_communis	pycom15g19050
rosa_chinensis	RchiOBHm_Chr2g0094351
rosa_laevigata	RLG00000016482
rosa_multiflora	Rmu_ssc0000229.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147210
rosa_rugosa	Rorug02G0043400
rosa_samantha	Rh2AG091300 Rh2BG091000 Rh2CG093600 Rh2DG090000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	918
Acc36I	ACCTGC	3 cut(s)	64, 839, 922
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	111, 658
AccII	CGCG	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	1851
AciI	CCGC	7 cut(s)	20, 26, 33, 45, 65, 253, 853
AclWI	GGATC	1 cut(s)	750
AcoI	YGGCCR	2 cut(s)	190, 409
AcsI	RAATTY	5 cut(s)	580, 1155, 1436, 1676, 1716
AcuI	CTGAAG	3 cut(s)	959, 1187, 1288
AcyI	GRCGYC	2 cut(s)	17, 659
AfaI	GTAC	4 cut(s)	113, 230, 291, 1802
AfiI	CCNNNNNNNGG	5 cut(s)	121, 701, 1206, 1207, 1720
AflII	CTTAAG	2 cut(s)	907, 1886
AgsI	TTSAA	9 cut(s)	61, 649, 975, 1033, 1709, 1810, 1867, 1882, 1998
AjnI	CCWGG	3 cut(s)	192, 440, 1444
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
Alw26I	GTCTC	2 cut(s)	130, 147
AlwI	GGATC	1 cut(s)	750
Ama87I	CYCGRG	2 cut(s)	765, 1364
Aor13HI	TCCGGA	1 cut(s)	1851
AoxI	GGCC	5 cut(s)	190, 409, 443, 637, 1542
ApeKI	GCWGC	3 cut(s)	237, 598, 1412
ApoI	RAATTY	5 cut(s)	580, 1155, 1436, 1676, 1716
ArsI	GACNNNNNNTTYG	4 cut(s)	531, 563, 1007, 1039
AseI	ATTAAT	1 cut(s)	681
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	661, 919
AspS9I	GGNCC	6 cut(s)	338, 416, 444, 638, 1542, 1723
AsuHPI	GGTGA	6 cut(s)	59, 70, 1390, 1756, 1936, 1966
AvaI	CYCGRG	2 cut(s)	765, 1364
AvaII	GGWCC	3 cut(s)	338, 416, 1723
BaeGI	GKGCMC	1 cut(s)	992
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	111, 658
BbvI	GCAGC	3 cut(s)	249, 610, 1399
BccI	CCATC	5 cut(s)	44, 125, 767, 995, 1644
BceAI	ACGGC	2 cut(s)	827, 1764
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	3 cut(s)	194, 442, 1446
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	130, 147
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	1965
BfoI	RGCGCY	1 cut(s)	662
BfrI	CTTAAG	2 cut(s)	907, 1886
BfuAI	ACCTGC	3 cut(s)	64, 839, 922
BfuI	GTATCC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	1773
BisI	GCNGC	5 cut(s)	20, 65, 238, 599, 1413
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	5 cut(s)	21, 66, 239, 600, 1414
Bme1390I	CCNGG	3 cut(s)	194, 442, 1446
Bme18I	GGWCC	3 cut(s)	338, 416, 1723
BmeT110I	CYCGRG	2 cut(s)	765, 1364
BmgT120I	GGNCC	6 cut(s)	338, 416, 444, 638, 1542, 1723
BmiI	GGNNCC	3 cut(s)	113, 208, 660
BmrFI	CCNGG	3 cut(s)	194, 442, 1446
BmrI	ACTGGG	3 cut(s)	564, 958, 1537
BmsI	GCATC	4 cut(s)	60, 955, 1171, 1399
BmuI	ACTGGG	3 cut(s)	564, 958, 1537
BoxI	GACNNNNGTC	1 cut(s)	1100
Bpu1102I	GCTNAGC	1 cut(s)	562
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	17, 659
BsaI	GGTCTC	2 cut(s)	130, 147
BsaJI	CCNNGG	4 cut(s)	153, 412, 440, 1365
BsaWI	WCCGGW	1 cut(s)	1851
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 701, 1206, 1207, 1720
Bse118I	RCCGGY	3 cut(s)	4, 114, 188
Bse1I	ACTGG	9 cut(s)	297, 474, 570, 953, 1268, 1391, 1532, 1735, 1870
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	1851
BseBI	CCWGG	3 cut(s)	194, 442, 1446
BseDI	CCNNGG	4 cut(s)	153, 412, 440, 1365
BseGI	GGATG	5 cut(s)	454, 970, 1414, 1655, 1831
BseLI	CCNNNNNNNGG	5 cut(s)	121, 701, 1206, 1207, 1720
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	7 cut(s)	158, 179, 576, 798, 1050, 1115, 1160
BseNI	ACTGG	9 cut(s)	297, 474, 570, 953, 1268, 1391, 1532, 1735, 1870
BseRI	GAGGAG	4 cut(s)	783, 1464, 1697, 1913
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	3 cut(s)	249, 610, 1399
BseYI	CCCAGC	2 cut(s)	1286, 1338
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	5 cut(s)	192, 411, 445, 639, 1544
BshNI	GGYRCC	2 cut(s)	111, 658
BsiHKCI	CYCGRG	2 cut(s)	765, 1364
BsiSI	CCGG	4 cut(s)	5, 115, 189, 1852
BslFI	GGGAC	1 cut(s)	1397
BslI	CCNNNNNNNGG	5 cut(s)	121, 701, 1206, 1207, 1720
BsmAI	GTCTC	2 cut(s)	130, 147
BsmFI	GGGAC	1 cut(s)	1397
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	5 cut(s)	192, 411, 445, 639, 1544
Bso31I	GGTCTC	2 cut(s)	130, 147
BsoBI	CYCGRG	2 cut(s)	765, 1364
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp13I	TCCGGA	1 cut(s)	1851
Bsp143I	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
Bsp1720I	GCTNAGC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	7 cut(s)	20, 26, 33, 45, 65, 253, 853
BspANI	GGCC	5 cut(s)	192, 411, 445, 639, 1544
BspCNI	CTCAG	7 cut(s)	157, 178, 575, 799, 1051, 1116, 1159
BspEI	TCCGGA	1 cut(s)	1851
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	113, 208, 660
BspMAI	CTGCAG	1 cut(s)	1969
BspMI	ACCTGC	3 cut(s)	64, 839, 922
BspPI	GGATC	1 cut(s)	750
BspT107I	GGYRCC	2 cut(s)	111, 658
BspTI	CTTAAG	2 cut(s)	907, 1886
BspTNI	GGTCTC	2 cut(s)	130, 147
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	3 cut(s)	4, 114, 188
BsrI	ACTGG	9 cut(s)	297, 474, 570, 953, 1268, 1391, 1532, 1735, 1870
BssAI	RCCGGY	3 cut(s)	4, 114, 188
BssECI	CCNNGG	4 cut(s)	153, 412, 440, 1365
BssMI	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
BssNI	GRCGYC	2 cut(s)	17, 659
BssT1I	CCWWGG	2 cut(s)	153, 412
Bst2UI	CCWGG	3 cut(s)	194, 442, 1446
Bst4CI	ACNGT	8 cut(s)	595, 624, 979, 987, 1537, 1614, 1936, 1954
Bst6I	CTCTTC	2 cut(s)	935, 1236
BstACI	GRCGYC	2 cut(s)	17, 659
BstAFI	CTTAAG	2 cut(s)	907, 1886
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	5 cut(s)	24, 101, 150, 663, 1588
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	5 cut(s)	454, 970, 1414, 1655, 1831
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	661, 919
BstKTI	GATC	9 cut(s)	52, 306, 745, 1396, 1491, 1514, 1776, 1893, 1932
BstMAI	GTCTC	2 cut(s)	130, 147
BstMBI	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 32, 70, 158, 175, 353, 719, 1283
BstNI	CCWGG	3 cut(s)	194, 442, 1446
BstNSI	RCATGY	2 cut(s)	1590, 1984
BstPAI	GACNNNNGTC	1 cut(s)	1100
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	192, 440, 1444
BstSFI	CTRYAG	1 cut(s)	1965
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	249, 610, 1399
BstX2I	RGATCY	1 cut(s)	1773
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	1773
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	5 cut(s)	192, 411, 445, 639, 1544
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	1926
BtsCI	GGATG	5 cut(s)	454, 970, 1414, 1655, 1831
BtsI	GCAGTG	2 cut(s)	729, 1661
BtsIMutI	CAGTG	8 cut(s)	577, 729, 984, 1312, 1533, 1619, 1661, 1941
BveI	ACCTGC	3 cut(s)	64, 839, 922
Cac8I	GCNNGC	5 cut(s)	24, 101, 150, 663, 1588
CfoI	GCGC	2 cut(s)	661, 919
Cfr10I	RCCGGY	3 cut(s)	4, 114, 188
Cfr13I	GGNCC	6 cut(s)	338, 416, 444, 638, 1542, 1723
CseI	GACGC	2 cut(s)	25, 737
Csp6I	GTAC	4 cut(s)	112, 229, 290, 1801
CviAII	CATG	5 cut(s)	121, 154, 1420, 1587, 1981
CviQI	GTAC	4 cut(s)	112, 229, 290, 1801
DinI	GGCGCC	1 cut(s)	660
DpnI	GATC	9 cut(s)	51, 305, 744, 1395, 1490, 1513, 1775, 1892, 1931
DpnII	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
EaeI	YGGCCR	2 cut(s)	190, 409
Eam1104I	CTCTTC	2 cut(s)	935, 1236
EarI	CTCTTC	2 cut(s)	935, 1236
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	153, 412
Eco31I	GGTCTC	2 cut(s)	130, 147
Eco32I	GATATC	3 cut(s)	85, 894, 1700
Eco47I	GGWCC	3 cut(s)	338, 416, 1723
Eco57I	CTGAAG	3 cut(s)	959, 1187, 1288
Eco88I	CYCGRG	2 cut(s)	765, 1364
Eco91I	GGTNACC	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	416, 444
EcoO65I	GGTNACC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	1155
EcoRII	CCWGG	3 cut(s)	192, 440, 1444
EcoRV	GATATC	3 cut(s)	85, 894, 1700
EcoT14I	CCWWGG	2 cut(s)	153, 412
EgeI	GGCGCC	1 cut(s)	660
EheI	GGCGCC	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	153, 412
FaeI	CATG	5 cut(s)	124, 157, 1423, 1590, 1984
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FaqI	GGGAC	1 cut(s)	1397
FatI	CATG	5 cut(s)	120, 153, 1419, 1586, 1980
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	5 cut(s)	20, 65, 238, 599, 1413
FokI	GGATG	5 cut(s)	441, 977, 1421, 1662, 1838
Fsp4HI	GCNGC	5 cut(s)	20, 65, 238, 599, 1413
FspBI	CTAG	1 cut(s)	179
FspI	TGCGCA	1 cut(s)	918
GlaI	GCGC	2 cut(s)	660, 918
GluI	GCNGC	5 cut(s)	20, 65, 238, 599, 1413
GsaI	CCCAGC	2 cut(s)	1290, 1342
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	5 cut(s)	192, 411, 445, 639, 1544
HapII	CCGG	4 cut(s)	5, 115, 189, 1852
HgaI	GACGC	2 cut(s)	25, 737
HhaI	GCGC	2 cut(s)	661, 919
Hin1I	GRCGYC	2 cut(s)	17, 659
Hin1II	CATG	5 cut(s)	124, 157, 1423, 1590, 1984
Hin6I	GCGC	2 cut(s)	659, 917
HinP1I	GCGC	2 cut(s)	659, 917
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HindIII	AAGCTT	2 cut(s)	1883, 2000
HpaII	CCGG	4 cut(s)	5, 115, 189, 1852
HphI	GGTGA	6 cut(s)	59, 70, 1390, 1756, 1936, 1966
Hpy166II	GTNNAC	3 cut(s)	886, 1105, 1957
Hpy8I	GTNNAC	3 cut(s)	886, 1105, 1957
Hpy99I	CGWCG	2 cut(s)	215, 753
HpyAV	CCTTC	7 cut(s)	612, 699, 1119, 1162, 1220, 1285, 1493
HpyCH4III	ACNGT	8 cut(s)	595, 624, 979, 987, 1537, 1614, 1936, 1954
HpyCH4IV	ACGT	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 32, 70, 158, 175, 353, 719, 1283
HpySE526I	ACGT	1 cut(s)	667
Hsp92I	GRCGYC	2 cut(s)	17, 659
Hsp92II	CATG	5 cut(s)	124, 157, 1423, 1590, 1984
HspAI	GCGC	2 cut(s)	659, 917
KasI	GGCGCC	1 cut(s)	658
Kpn2I	TCCGGA	1 cut(s)	1851
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
LmnI	GCTCC	4 cut(s)	212, 571, 1185, 1854
Lsp1109I	GCAGC	3 cut(s)	249, 610, 1399
LweI	GCATC	4 cut(s)	60, 955, 1171, 1399
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	667
MalI	GATC	9 cut(s)	51, 305, 744, 1395, 1490, 1513, 1775, 1892, 1931
MboI	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
MboII	GAAGA	9 cut(s)	934, 952, 1010, 1164, 1253, 1521, 1694, 1697, 1939
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	1 cut(s)	1773
MhlI	GDGCHC	1 cut(s)	992
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	9 cut(s)	370, 580, 1047, 1066, 1155, 1326, 1436, 1676, 1716
MluNI	TGGCCA	1 cut(s)	411
Mly113I	GGCGCC	1 cut(s)	659
MlyI	GAGTC	4 cut(s)	290, 341, 735, 797
MmeI	TCCRAC	2 cut(s)	365, 1624
Mox20I	TGGCCA	1 cut(s)	411
MroI	TCCGGA	1 cut(s)	1851
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1560, 1887, 1941
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	2 cut(s)	67, 1021
MspCI	CTTAAG	2 cut(s)	907, 1886
MspI	CCGG	4 cut(s)	5, 115, 189, 1852
MspR9I	CCNGG	3 cut(s)	194, 442, 1446
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	3 cut(s)	194, 442, 1446
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	8 cut(s)	16, 32, 70, 158, 175, 353, 719, 1283
NarI	GGCGCC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
NlaIII	CATG	5 cut(s)	124, 157, 1423, 1590, 1984
NlaIV	GGNNCC	3 cut(s)	113, 208, 660
NmuCI	GTSAC	8 cut(s)	76, 727, 826, 944, 1093, 1531, 1658, 1744
NsbI	TGCGCA	1 cut(s)	918
NspI	RCATGY	2 cut(s)	1590, 1984
PaeI	GCATGC	1 cut(s)	1590
PaeR7I	CTCGAG	1 cut(s)	765
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	6 cut(s)	313, 436, 532, 1172, 1568, 1760
PflFI	GACNNNGTC	2 cut(s)	1529, 1847
PkrI	GCNGC	5 cut(s)	21, 66, 239, 600, 1414
PleI	GAGTC	4 cut(s)	290, 340, 734, 797
PluTI	GGCGCC	1 cut(s)	662
PpsI	GAGTC	4 cut(s)	290, 340, 734, 797
Ppu21I	YACGTR	1 cut(s)	668
PpuMI	RGGWCCY	1 cut(s)	416
PshAI	GACNNNNGTC	1 cut(s)	1100
PshBI	ATTAAT	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	192, 440, 1444
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	2 cut(s)	1286, 1338
PspGI	CCWGG	3 cut(s)	192, 440, 1444
PspN4I	GGNNCC	3 cut(s)	113, 208, 660
PspPI	GGNCC	6 cut(s)	338, 416, 444, 638, 1542, 1723
PspPPI	RGGWCCY	1 cut(s)	416
PspXI	VCTCGAGB	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	1969
PsuI	RGATCY	1 cut(s)	1773
PsyI	GACNNNGTC	2 cut(s)	1529, 1847
PvuII	CAGCTG	1 cut(s)	1021
RsaI	GTAC	4 cut(s)	113, 230, 291, 1802
RsaNI	GTAC	4 cut(s)	112, 229, 290, 1801
SaqAI	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1560, 1887, 1941
SatI	GCNGC	5 cut(s)	20, 65, 238, 599, 1413
Sau3AI	GATC	9 cut(s)	49, 303, 742, 1393, 1488, 1511, 1773, 1890, 1929
Sau96I	GGNCC	6 cut(s)	338, 416, 444, 638, 1542, 1723
SchI	GAGTC	4 cut(s)	290, 341, 735, 797
ScrFI	CCNGG	3 cut(s)	194, 442, 1446
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	4 cut(s)	60, 955, 1171, 1399
SfcI	CTRYAG	1 cut(s)	1965
SfoI	GGCGCC	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	765
SinI	GGWCC	3 cut(s)	338, 416, 1723
SlaI	CTCGAG	1 cut(s)	765
SmlI	CTYRAG	3 cut(s)	765, 907, 1886
SmoI	CTYRAG	3 cut(s)	765, 907, 1886
SphI	GCATGC	1 cut(s)	1590
Sse9I	AATT	9 cut(s)	370, 580, 1047, 1066, 1155, 1326, 1436, 1676, 1716
SsiI	CCGC	7 cut(s)	20, 26, 33, 45, 65, 253, 853
SspDI	GGCGCC	1 cut(s)	658
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	3 cut(s)	192, 440, 1444
StyI	CCWWGG	2 cut(s)	153, 412
TaaI	ACNGT	8 cut(s)	595, 624, 979, 987, 1537, 1614, 1936, 1954
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	766, 1396, 1631
TasI	AATT	9 cut(s)	370, 580, 1047, 1066, 1155, 1326, 1436, 1676, 1716
TatI	WGTACW	3 cut(s)	228, 289, 1800
TauI	GCSGC	2 cut(s)	22, 67
TfiI	GAWTC	6 cut(s)	313, 436, 532, 1172, 1568, 1760
Tru1I	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1560, 1887, 1941
Tru9I	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1560, 1887, 1941
TscAI	CASTG	8 cut(s)	577, 736, 984, 1312, 1540, 1619, 1661, 1941
TseFI	GTSAC	8 cut(s)	76, 727, 826, 944, 1093, 1531, 1658, 1744
TseI	GCWGC	3 cut(s)	237, 598, 1412
Tsp45I	GTSAC	8 cut(s)	76, 727, 826, 944, 1093, 1531, 1658, 1744
TspDTI	ATGAA	5 cut(s)	443, 1011, 1319, 1512, 1546
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	8 cut(s)	577, 736, 984, 1312, 1540, 1619, 1661, 1941
Tth111I	GACNNNGTC	2 cut(s)	1529, 1847
Vha464I	CTTAAG	2 cut(s)	907, 1886
VpaK11BI	GGWCC	3 cut(s)	338, 416, 1723
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	5 cut(s)	580, 1155, 1436, 1676, 1716
XceI	RCATGY	2 cut(s)	1590, 1984
XhoI	CTCGAG	1 cut(s)	765
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.