Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012807

Physical Location & Seq

Genomic Coordinates Reverse (-)

7091166 .. 7095313

Gene Structure 4148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG091000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGCCGCTGCAACTGACGCCGAACGCGGTATCCGCCATCATCGGCGGTGATCTCAACTTGAAGCCGCTGATGCAGGTCGCCGATATCAAGCTCATCGGCTCGCAGGAGAGGTACCGGCTCATGGTCTCCGACGGCGTTTGGTCTCAGCACGCCATGGTTGCCACTCAGCTCAACCAGCTAGTCAAGACCGGCCAGGTCAGGAAAGGCTCCGTCGTTCAGCTTACCGAGTACATTTGCAGCGAAGTCCAGAACCGCAAGATTATTGTTGTGCTGAATATGGAAACTATTGTACTGGACTCGGAGATTATTGGGAATCCAAAACAATATGTTGAGTCTGGTCCAACTACTGAAACTGCATTGCCTAAGAACAATTTTCAGCAGTCTGCCTATGGCAACAATCATATGATTGGCCAAGGGCCTGTTCCCAAATGGCAGAATCCCAGGCCCACTTTTCATCCTGAAAACTTTGTTTCCAGTATGCCAAATGCCAGATCTACATTCCAATCTGAAAGCTCTTTTTACAATACTCCCAATCCCAGACCTACATTTCATCCTGAAAGCTCAGCTCCCAGTGTGCCAAATTTCCGAGCTACTGTGCAGCCTTCCTACCAGCCACCTCCACAGTATAAAAATCGTGGCCCTGTGTTCAAGAATGAGGCGCCAGCACGTATTATACCTATTAATGCTCTAAATCCTTATCAGGGAAGGTGGGCTATCAAGGCAAGAGTCACTGCAAAAGGGGATCAGCGTCGGTATAACAATGCTCGAGGAGATGGTAAGGTTTTCTCTTTTGACCTCCTTGACTCTGAGGGTGGGGAAATACGAGTGACCTGCTTTAATGCTGTTCTTGACCGCTTTTATGATATTATTGAGGTCGGCAAAGTTTACTTGATATCAAAGGGTAGCTTAAAACCTGCGCAGAAGAACTTTAATCATCTGAAAAGTGACTGGGAGATAACTCTGGATGCAAGTTCAACAGTGGAACTGTGCCCTGATGAAGATGGTTCTATACCAGACCAGCTGTTTGACTTCAAGCCTATTAGTGCAATTGAGAATGCTGAGAGTAATTCTATACTTGATGTTATTGGCATTGTGACATCTGTCAACCCTTCTACTACTATCCTGAGAAAGAATGGTATGGAAACTCAGAGAAGAATTCTGCATCTGAAGGATTGCTCTGGTAGGAGCGTTGAGATAACCCTATGGGGAGAGGTCTGTAACAGGGAAGGTCAAAAGCTGGAAGAGATGTTGGCTTCTGGTGTTTTTCCAGTTTTAGCTGTCAAAGCTGGGAAGGTTAATGACTTCAGTGGGAAATCCATAGGAACAATTCATTCTACCCAGCTATACATTAACCCAGATTTGCCTGAGGCTCGTCAGGTGAGGGACTGGTTTGATCGAGGGGGAAAGGATGCCGCTTCCATGTCCATTTCTAAGGAATTTATGCCAGGAGTAACTAAGAATGACATACGCAAAACTGTTTCTCAGATCAAGAATGAAGGTCTTGGAAGATCAGATAAGCCAGACTGGGTCACTGTGAGGGCCACCATATCTTTCATTAAAACCGATTCTTTCTGTTACACAGCATGCCCGTTGATGATTGGAGATAGACAGTGTAGCAAGAAAGTGTCAAGGTCAGGAGTTGGAGGATGGCAGTGTGACAGGTGCAATCAAGAATTTGAGGAGTGTGATTATAGATATCTTCTTCAAGCCCAAATTCAGGACCATACTGAATTGACTTGGGTGACGGCTTTTCAGGAATCAGGGGCAGAGATCTTGGGTTGCACAGCAAAGGAGTTGTACTTTTTGAAATACGAGGGGCAGGATGAGGAAAAGTTCGCAGACATAATCCGGAGCAGTATTTTCAACCAGTTTATGTTCAAGCTTAAGATCAAAGAGGAGTTGTATGGCGACGAGCAGAGGGTGAAGATCACAGTGGTTAAGGCAGATACGGTGAACTATTCTGCAGAGAGCAGATACATGCTTGATGTGATTTCGAAGCTTTCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

669

Amino Acids

75.07

Weight (kDa)

7.48

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	5 - 97	1.8e-28	Replication factor-A protein 1, N-terminal domain
tRNA_anti-codon	PF01336	239 - 319	2.3e-08	OB-fold nucleic acid binding domain
REPA_OB_2	PF16900	347 - 451	5.3e-28	Replication protein A OB domain
Rep_fac-A_C	PF08646	509 - 660	2.6e-50	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06510 AT2G06510
fragaria_vesca	FvH4_1g08261 FvH4_1g08261 FvH4_1g08261
malus_domestica	MD02G1087200.v1.1 MD15G1214800.v1.1
prunus_persica	Prupe.7G202500_v2.0.a1
pyrus_communis	pycom15g19050
rosa_chinensis	RchiOBHm_Chr2g0094351
rosa_laevigata	RLG00000016482
rosa_multiflora	Rmu_ssc0000229.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147210
rosa_rugosa	Rorug02G0043400
rosa_samantha	Rh2AG091300 Rh2BG091000 Rh2CG093600 Rh2DG090000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	918
Acc36I	ACCTGC	3 cut(s)	64, 839, 922
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	111, 658
AccII	CGCG	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	1848
AciI	CCGC	8 cut(s)	5, 26, 33, 45, 65, 253, 853, 1413
AclWI	GGATC	1 cut(s)	750
AcoI	YGGCCR	2 cut(s)	190, 409
AcsI	RAATTY	5 cut(s)	580, 1155, 1436, 1673, 1713
AcuI	CTGAAG	2 cut(s)	1187, 1288
AcyI	GRCGYC	2 cut(s)	17, 659
AfaI	GTAC	4 cut(s)	113, 230, 291, 1799
AfiI	CCNNNNNNNGG	3 cut(s)	121, 701, 1717
AflII	CTTAAG	1 cut(s)	1883
AgsI	TTSAA	8 cut(s)	61, 649, 975, 1033, 1706, 1807, 1864, 1879
AjnI	CCWGG	3 cut(s)	192, 440, 1444
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
Alw26I	GTCTC	2 cut(s)	130, 147
AlwI	GGATC	1 cut(s)	750
Ama87I	CYCGRG	1 cut(s)	765
Aor13HI	TCCGGA	1 cut(s)	1848
AoxI	GGCC	6 cut(s)	190, 409, 416, 443, 637, 1539
ApeKI	GCWGC	3 cut(s)	7, 237, 598
ApoI	RAATTY	5 cut(s)	580, 1155, 1436, 1673, 1713
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
AseI	ATTAAT	1 cut(s)	681
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	661, 919
AspS9I	GGNCC	6 cut(s)	338, 416, 444, 638, 1539, 1720
AsuHPI	GGTGA	5 cut(s)	59, 1390, 1753, 1933, 1963
AsuII	TTCGAA	1 cut(s)	1994
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	2 cut(s)	338, 1720
AxyI	CCTNAGG	1 cut(s)	1365
BaeGI	GKGCMC	1 cut(s)	992
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	111, 658
BbvI	GCAGC	2 cut(s)	249, 610
BccI	CCATC	4 cut(s)	44, 767, 995, 1641
BceAI	ACGGC	2 cut(s)	148, 1761
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	3 cut(s)	194, 442, 1446
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	130, 147
BfaI	CTAG	2 cut(s)	179, 2004
BfmI	CTRYAG	1 cut(s)	1962
BfoI	RGCGCY	1 cut(s)	662
BfrI	CTTAAG	1 cut(s)	1883
BfuAI	ACCTGC	3 cut(s)	64, 839, 922
BfuI	GTATCC	1 cut(s)	40
BglII	AGATCT	2 cut(s)	491, 1770
BisI	GCNGC	6 cut(s)	5, 8, 65, 238, 599, 1413
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	6 cut(s)	6, 9, 66, 239, 600, 1414
Bme1390I	CCNGG	3 cut(s)	194, 442, 1446
Bme18I	GGWCC	2 cut(s)	338, 1720
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	6 cut(s)	338, 416, 444, 638, 1539, 1720
BmiI	GGNNCC	3 cut(s)	113, 208, 660
BmrFI	CCNGG	3 cut(s)	194, 442, 1446
BmrI	ACTGGG	3 cut(s)	564, 958, 1534
BmsI	GCATC	4 cut(s)	60, 955, 1171, 1399
BmuI	ACTGGG	3 cut(s)	564, 958, 1534
BoxI	GACNNNNGTC	1 cut(s)	1100
Bpu1102I	GCTNAGC	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	1994
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	17, 659
BsaI	GGTCTC	2 cut(s)	130, 147
BsaJI	CCNNGG	3 cut(s)	153, 412, 440
BsaWI	WCCGGW	1 cut(s)	1848
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 701, 1717
Bse118I	RCCGGY	2 cut(s)	114, 188
Bse1I	ACTGG	8 cut(s)	297, 474, 570, 953, 1268, 1391, 1529, 1867
Bse21I	CCTNAGG	1 cut(s)	1365
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	1848
BseBI	CCWGG	3 cut(s)	194, 442, 1446
BseDI	CCNNGG	3 cut(s)	153, 412, 440
BseGI	GGATG	6 cut(s)	454, 550, 970, 1414, 1652, 1828
BseLI	CCNNNNNNNGG	3 cut(s)	121, 701, 1717
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	9 cut(s)	158, 179, 576, 798, 1050, 1115, 1160, 1356, 1496
BseNI	ACTGG	8 cut(s)	297, 474, 570, 953, 1268, 1391, 1529, 1867
BseRI	GAGGAG	3 cut(s)	783, 1694, 1910
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	249, 610
BseYI	CCCAGC	2 cut(s)	1286, 1338
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1541
BshNI	GGYRCC	2 cut(s)	111, 658
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	3 cut(s)	115, 189, 1849
BslFI	GGGAC	1 cut(s)	1397
BslI	CCNNNNNNNGG	3 cut(s)	121, 701, 1717
BsmAI	GTCTC	2 cut(s)	130, 147
BsmFI	GGGAC	1 cut(s)	1397
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1541
Bso31I	GGTCTC	2 cut(s)	130, 147
BsoBI	CYCGRG	1 cut(s)	765
Bsp119I	TTCGAA	1 cut(s)	1994
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp13I	TCCGGA	1 cut(s)	1848
Bsp143I	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
Bsp1720I	GCTNAGC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	8 cut(s)	5, 26, 33, 45, 65, 253, 853, 1413
BspANI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1541
BspCNI	CTCAG	9 cut(s)	157, 178, 575, 799, 1051, 1116, 1159, 1357, 1495
BspEI	TCCGGA	1 cut(s)	1848
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	113, 208, 660
BspMAI	CTGCAG	1 cut(s)	1966
BspMI	ACCTGC	3 cut(s)	64, 839, 922
BspPI	GGATC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	1994
BspT107I	GGYRCC	2 cut(s)	111, 658
BspTI	CTTAAG	1 cut(s)	1883
BspTNI	GGTCTC	2 cut(s)	130, 147
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	2 cut(s)	114, 188
BsrI	ACTGG	8 cut(s)	297, 474, 570, 953, 1268, 1391, 1529, 1867
BssAI	RCCGGY	2 cut(s)	114, 188
BssECI	CCNNGG	3 cut(s)	153, 412, 440
BssMI	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
BssNI	GRCGYC	2 cut(s)	17, 659
BssT1I	CCWWGG	2 cut(s)	153, 412
Bst2UI	CCWGG	3 cut(s)	194, 442, 1446
Bst4CI	ACNGT	9 cut(s)	595, 624, 979, 987, 1477, 1534, 1611, 1933, 1951
Bst6I	CTCTTC	1 cut(s)	1236
BstACI	GRCGYC	2 cut(s)	17, 659
BstAFI	CTTAAG	1 cut(s)	1883
BstBAI	YACGTR	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	1994
BstC8I	GCNNGC	4 cut(s)	101, 150, 663, 1585
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	6 cut(s)	454, 550, 970, 1414, 1652, 1828
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	661, 919
BstKTI	GATC	9 cut(s)	52, 494, 745, 1396, 1488, 1511, 1773, 1890, 1929
BstMAI	GTCTC	2 cut(s)	130, 147
BstMBI	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 32, 70, 158, 175, 719, 1283
BstNI	CCWGG	3 cut(s)	194, 442, 1446
BstNSI	RCATGY	2 cut(s)	1587, 1981
BstPAI	GACNNNNGTC	1 cut(s)	1100
BstSCI	CCNGG	3 cut(s)	192, 440, 1444
BstSFI	CTRYAG	1 cut(s)	1962
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	249, 610
BstX2I	RGATCY	2 cut(s)	491, 1770
BstYI	RGATCY	2 cut(s)	491, 1770
Bsu36I	CCTNAGG	1 cut(s)	1365
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1541
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	6 cut(s)	454, 550, 970, 1414, 1652, 1828
BtsI	GCAGTG	2 cut(s)	729, 1658
BtsIMutI	CAGTG	8 cut(s)	577, 729, 984, 1312, 1530, 1616, 1658, 1938
BveI	ACCTGC	3 cut(s)	64, 839, 922
Cac8I	GCNNGC	4 cut(s)	101, 150, 663, 1585
CfoI	GCGC	2 cut(s)	661, 919
Cfr10I	RCCGGY	2 cut(s)	114, 188
Cfr13I	GGNCC	6 cut(s)	338, 416, 444, 638, 1539, 1720
CseI	GACGC	2 cut(s)	25, 737
Csp6I	GTAC	4 cut(s)	112, 229, 290, 1798
CviAII	CATG	5 cut(s)	121, 154, 1420, 1584, 1978
CviQI	GTAC	4 cut(s)	112, 229, 290, 1798
DinI	GGCGCC	1 cut(s)	660
DpnI	GATC	9 cut(s)	51, 493, 744, 1395, 1487, 1510, 1772, 1889, 1928
DpnII	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
EaeI	YGGCCR	2 cut(s)	190, 409
Eam1104I	CTCTTC	1 cut(s)	1236
EarI	CTCTTC	1 cut(s)	1236
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	153, 412
Eco31I	GGTCTC	2 cut(s)	130, 147
Eco32I	GATATC	3 cut(s)	85, 894, 1697
Eco47I	GGWCC	2 cut(s)	338, 1720
Eco57I	CTGAAG	2 cut(s)	1187, 1288
Eco81I	CCTNAGG	1 cut(s)	1365
Eco88I	CYCGRG	1 cut(s)	765
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	1155
EcoRII	CCWGG	3 cut(s)	192, 440, 1444
EcoRV	GATATC	3 cut(s)	85, 894, 1697
EcoT14I	CCWWGG	2 cut(s)	153, 412
EgeI	GGCGCC	1 cut(s)	660
EheI	GGCGCC	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	153, 412
FaeI	CATG	5 cut(s)	124, 157, 1423, 1587, 1981
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FaqI	GGGAC	1 cut(s)	1397
FatI	CATG	5 cut(s)	120, 153, 1419, 1583, 1977
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	6 cut(s)	5, 8, 65, 238, 599, 1413
FokI	GGATG	6 cut(s)	441, 537, 977, 1421, 1659, 1835
Fsp4HI	GCNGC	6 cut(s)	5, 8, 65, 238, 599, 1413
FspBI	CTAG	2 cut(s)	179, 2004
FspI	TGCGCA	1 cut(s)	918
GlaI	GCGC	2 cut(s)	660, 918
GluI	GCNGC	6 cut(s)	5, 8, 65, 238, 599, 1413
GsaI	CCCAGC	2 cut(s)	1290, 1342
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1541
HapII	CCGG	3 cut(s)	115, 189, 1849
HgaI	GACGC	2 cut(s)	25, 737
HhaI	GCGC	2 cut(s)	661, 919
Hin1I	GRCGYC	2 cut(s)	17, 659
Hin1II	CATG	5 cut(s)	124, 157, 1423, 1587, 1981
Hin6I	GCGC	2 cut(s)	659, 917
HinP1I	GCGC	2 cut(s)	659, 917
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HindIII	AAGCTT	2 cut(s)	1880, 1997
HinfI	GANTC	8 cut(s)	296, 313, 332, 436, 726, 803, 1565, 1757
HpaII	CCGG	3 cut(s)	115, 189, 1849
HphI	GGTGA	5 cut(s)	59, 1390, 1753, 1933, 1963
Hpy166II	GTNNAC	3 cut(s)	886, 1105, 1954
Hpy8I	GTNNAC	3 cut(s)	886, 1105, 1954
Hpy99I	CGWCG	4 cut(s)	134, 215, 753, 1913
HpyAV	CCTTC	7 cut(s)	612, 699, 1119, 1162, 1220, 1285, 1490
HpyCH4III	ACNGT	9 cut(s)	595, 624, 979, 987, 1477, 1534, 1611, 1933, 1951
HpyCH4IV	ACGT	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 32, 70, 158, 175, 719, 1283
HpySE526I	ACGT	1 cut(s)	667
Hsp92I	GRCGYC	2 cut(s)	17, 659
Hsp92II	CATG	5 cut(s)	124, 157, 1423, 1587, 1981
HspAI	GCGC	2 cut(s)	659, 917
KasI	GGCGCC	1 cut(s)	658
Kpn2I	TCCGGA	1 cut(s)	1848
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
LmnI	GCTCC	4 cut(s)	212, 571, 1185, 1851
Lsp1109I	GCAGC	2 cut(s)	249, 610
LweI	GCATC	4 cut(s)	60, 955, 1171, 1399
MaeI	CTAG	2 cut(s)	179, 2004
MaeII	ACGT	1 cut(s)	667
MalI	GATC	9 cut(s)	51, 493, 744, 1395, 1487, 1510, 1772, 1889, 1928
MboI	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
MboII	GAAGA	8 cut(s)	934, 1010, 1164, 1253, 1518, 1691, 1694, 1936
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	2 cut(s)	491, 1770
MhlI	GDGCHC	1 cut(s)	992
MlsI	TGGCCA	1 cut(s)	411
MluNI	TGGCCA	1 cut(s)	411
Mly113I	GGCGCC	1 cut(s)	659
MlyI	GAGTC	4 cut(s)	290, 341, 735, 797
MmeI	TCCRAC	3 cut(s)	153, 365, 1621
Mox20I	TGGCCA	1 cut(s)	411
MroI	TCCGGA	1 cut(s)	1848
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1557, 1884, 1938
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	3 cut(s)	7, 67, 1021
MspCI	CTTAAG	1 cut(s)	1883
MspI	CCGG	3 cut(s)	115, 189, 1849
MspR9I	CCNGG	3 cut(s)	194, 442, 1446
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	3 cut(s)	194, 442, 1446
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	7 cut(s)	16, 32, 70, 158, 175, 719, 1283
NarI	GGCGCC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
NlaIII	CATG	5 cut(s)	124, 157, 1423, 1587, 1981
NlaIV	GGNNCC	3 cut(s)	113, 208, 660
NmuCI	GTSAC	7 cut(s)	727, 826, 944, 1093, 1528, 1655, 1741
NsbI	TGCGCA	1 cut(s)	918
NspI	RCATGY	2 cut(s)	1587, 1981
NspV	TTCGAA	1 cut(s)	1994
PaeI	GCATGC	1 cut(s)	1587
PaeR7I	CTCGAG	1 cut(s)	765
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	4 cut(s)	313, 436, 1565, 1757
PflFI	GACNNNGTC	1 cut(s)	1526
PkrI	GCNGC	6 cut(s)	6, 9, 66, 239, 600, 1414
PleI	GAGTC	4 cut(s)	290, 340, 734, 797
PluTI	GGCGCC	1 cut(s)	662
PpsI	GAGTC	4 cut(s)	290, 340, 734, 797
Ppu21I	YACGTR	1 cut(s)	668
PshAI	GACNNNNGTC	1 cut(s)	1100
PshBI	ATTAAT	1 cut(s)	681
Psp6I	CCWGG	3 cut(s)	192, 440, 1444
PspFI	CCCAGC	2 cut(s)	1286, 1338
PspGI	CCWGG	3 cut(s)	192, 440, 1444
PspN4I	GGNNCC	3 cut(s)	113, 208, 660
PspPI	GGNCC	6 cut(s)	338, 416, 444, 638, 1539, 1720
PspXI	VCTCGAGB	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	1966
PsuI	RGATCY	2 cut(s)	491, 1770
PsyI	GACNNNGTC	1 cut(s)	1526
PvuII	CAGCTG	1 cut(s)	1021
RsaI	GTAC	4 cut(s)	113, 230, 291, 1799
RsaNI	GTAC	4 cut(s)	112, 229, 290, 1798
SaqAI	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1557, 1884, 1938
SatI	GCNGC	6 cut(s)	5, 8, 65, 238, 599, 1413
Sau3AI	GATC	9 cut(s)	49, 491, 742, 1393, 1485, 1508, 1770, 1887, 1926
Sau96I	GGNCC	6 cut(s)	338, 416, 444, 638, 1539, 1720
SchI	GAGTC	4 cut(s)	290, 341, 735, 797
ScrFI	CCNGG	3 cut(s)	194, 442, 1446
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	4 cut(s)	60, 955, 1171, 1399
SfcI	CTRYAG	1 cut(s)	1962
SfoI	GGCGCC	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	765
SfuI	TTCGAA	1 cut(s)	1994
SinI	GGWCC	2 cut(s)	338, 1720
SlaI	CTCGAG	1 cut(s)	765
SmlI	CTYRAG	2 cut(s)	765, 1883
SmoI	CTYRAG	2 cut(s)	765, 1883
SphI	GCATGC	1 cut(s)	1587
SsiI	CCGC	8 cut(s)	5, 26, 33, 45, 65, 253, 853, 1413
SspDI	GGCGCC	1 cut(s)	658
SspMI	CTAG	2 cut(s)	179, 2004
StyD4I	CCNGG	3 cut(s)	192, 440, 1444
StyI	CCWWGG	2 cut(s)	153, 412
TaaI	ACNGT	9 cut(s)	595, 624, 979, 987, 1477, 1534, 1611, 1933, 1951
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	766, 1396, 1994
TatI	WGTACW	3 cut(s)	228, 289, 1797
TauI	GCSGC	3 cut(s)	7, 67, 1415
TfiI	GAWTC	4 cut(s)	313, 436, 1565, 1757
Tru1I	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1557, 1884, 1938
Tru9I	TTAA	9 cut(s)	681, 837, 908, 930, 1296, 1350, 1557, 1884, 1938
TscAI	CASTG	8 cut(s)	577, 736, 984, 1312, 1537, 1616, 1658, 1938
TseFI	GTSAC	7 cut(s)	727, 826, 944, 1093, 1528, 1655, 1741
TseI	GCWGC	3 cut(s)	7, 237, 598
Tsp45I	GTSAC	7 cut(s)	727, 826, 944, 1093, 1528, 1655, 1741
TspDTI	ATGAA	6 cut(s)	443, 539, 1011, 1319, 1509, 1543
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	8 cut(s)	577, 736, 984, 1312, 1537, 1616, 1658, 1938
Tth111I	GACNNNGTC	1 cut(s)	1526
Vha464I	CTTAAG	1 cut(s)	1883
VpaK11BI	GGWCC	2 cut(s)	338, 1720
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	5 cut(s)	580, 1155, 1436, 1673, 1713
XceI	RCATGY	2 cut(s)	1587, 1981
XhoI	CTCGAG	1 cut(s)	765
XspI	CTAG	2 cut(s)	179, 2004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.