Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012807

Physical Location & Seq

Genomic Coordinates Reverse (-)

7297229 .. 7300354

Gene Structure 3126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGCCGGTGCAACTGACGCCGAACGCGGTTTCCGCCATCATCGGCGGTGATCTCAACTTGAAGCCGCTGATGCAGGTCGCCGATATCAAGCTCATCGGCTCGCAGGAGAGGTACCGGCTCATGGTCTCCGACGGCGTTTGGTCTCAGCACGCCATGGTCGCCACTCAGCTCAACGGGCTAGTCAAGACCGGCCAGGTCAGGAAAGGCTCCGTCGTTCAGCTTACCGAGTACATTTGCAGCGAAGTCCAGAACCGCAAGATTATTGTTGTGCTGAATATGGAAACTATTGTACTGGACTCGGAGATTATTGGGAATCCAAAACAATATGTTGAGTCTGGTCCAACTACTGACACTGCATTGCCTAAGAACAATTTTCAGCAGTCTGCCTATGGCAACAATCATATGATTGGCCAAGGGCCTGTTCCCAAATGGCAGAATCCCAGGCCCTCTTTTCATCCTGAAAACTTTGTTTCCAGTATGCCAAATGCCAGACCTACATTCCAATCTGAAAGCTCTTTTTACAATACTCCCAATCCCAGACCTACATTTCATCCTGAAAGCTCAGCTCCCAGTGTGCCAAATTTCCGAGCTACTGTGCAGCCTTCCTACCAGCCACCTCCACAGTATAAAAATCGTGGCCCCGTGTTCAAGAATGAGGCGCCAGCACGTATTATACCTATTAATGCTCTAAATCCTTATCAGGGAAGGTGGGCTATCAAGGCAAGAGTCACTGCAAAAGGGGATCAGCGTCGGTATAACAATGCTCGAGGAGATGGTAAGGTTTTCTCTTTCGACCTCCTTGACTCTGAGGGTGGGGAAATACGAGTGACCTGCTTTAATGCCGTTCTTGACCGCTTTTATGATATTATTGAGGTCGGCAAAGTTTACTTGATATCAAAGGGTAGCTTAAAACCTGCGCAGAAGAACTTTAATCATCTGAAAAGTGATTGGGAGATAACTCTGGATGCAAGTTCAACTGTGGAACTGTGCCCTGATGAAGATGGTTCTATACCAGACCAGCTGTTTGACTTCAAGCCTATTAGTGCAATTGAGAATGCTGAGAGGGGAAAGGATGCCGCTTCCATGTCCATTTCTAAGGAATTTATGCCAGGAGGAGTAACTAAGAATGACATACGCAAAACTGTTTCTCAGATCAAGAATGAAGGTCTTGGAAGATCAGATAAGCCAGACTGGGTCACTGTGAGGGCCACCATATCTTTCATTAAAACCGATTCTTTCTGTTACACAGCATGCCCGTTGATGATTGGAGATAGACAGTGTAGCAAGAAAGTGTCGAGGTCAGGAGTTGGAGGATGGCAGTGTGACAGGTGCAATCAAGAATTTGAGGAGTGTGATTATAGATATCTTCTTCAAGCCCAAATTCAGGACCATACTGGATTGACTTGGGTGACAGCTTTTCAGGAATCAGGGGCAGAGATCTTGGGTTGCACAGCAAAGGAGTTGTACTTTTTGAAATACGAGGGGCAGGATGAGGAAAAGTTCGCAGACATAATCCGGAGCAGTATTTTCAACCAGTTTATGTTCAAGCTTAAGATCAAAGAGGAGTTGTATGGCGACGAGCAGAGGGTGAAGATCACAGTGGTTAAGGCAGATCCGGTGAACTATTCTGCAGAGAGCAGATACATGCTTGATGTGATTTCAAAGCTTTCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007141 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon

Protein Analysis

558

Amino Acids

62.61

Weight (kDa)

7.91

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep-A_N	PF04057	5 - 97	3.4e-28	Replication factor-A protein 1, N-terminal domain
tRNA_anti-codon	PF01336	239 - 319	1.8e-08	OB-fold nucleic acid binding domain
Rep_fac-A_C	PF08646	398 - 549	7.7e-52	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06510 AT2G06510
fragaria_vesca	FvH4_1g08261 FvH4_1g08261 FvH4_1g08261
malus_domestica	MD02G1087200.v1.1 MD15G1214800.v1.1
prunus_persica	Prupe.7G202500_v2.0.a1
pyrus_communis	pycom15g19050
rosa_chinensis	RchiOBHm_Chr2g0094351
rosa_laevigata	RLG00000016482
rosa_multiflora	Rmu_ssc0000229.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147210
rosa_rugosa	Rorug02G0043400
rosa_samantha	Rh2AG091300 Rh2BG091000 Rh2CG093600 Rh2DG090000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	918
Acc36I	ACCTGC	3 cut(s)	64, 839, 922
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	111, 658
AccII	CGCG	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	1515
AciI	CCGC	7 cut(s)	26, 33, 45, 65, 253, 853, 1077
AclWI	GGATC	2 cut(s)	750, 1607
AcoI	YGGCCR	2 cut(s)	190, 409
AcsI	RAATTY	4 cut(s)	580, 1100, 1340, 1380
AcyI	GRCGYC	2 cut(s)	17, 659
AfaI	GTAC	4 cut(s)	113, 230, 291, 1466
AfiI	CCNNNNNNNGG	3 cut(s)	121, 701, 1384
AflII	CTTAAG	1 cut(s)	1550
AgsI	TTSAA	9 cut(s)	61, 649, 975, 1033, 1373, 1474, 1531, 1546, 1662
AjnI	CCWGG	3 cut(s)	192, 440, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
Alw26I	GTCTC	2 cut(s)	130, 147
AlwI	GGATC	2 cut(s)	750, 1607
Ama87I	CYCGRG	1 cut(s)	765
Aor13HI	TCCGGA	1 cut(s)	1515
AoxI	GGCC	6 cut(s)	190, 409, 416, 443, 637, 1206
ApeKI	GCWGC	2 cut(s)	237, 598
ApoI	RAATTY	4 cut(s)	580, 1100, 1340, 1380
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
AseI	ATTAAT	1 cut(s)	681
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	661, 919
AspS9I	GGNCC	6 cut(s)	338, 416, 444, 638, 1206, 1387
AsuHPI	GGTGA	4 cut(s)	59, 1420, 1600, 1630
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	2 cut(s)	338, 1387
BaeGI	GKGCMC	1 cut(s)	992
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	111, 658
BbvI	GCAGC	2 cut(s)	249, 610
BccI	CCATC	4 cut(s)	44, 767, 995, 1308
BceAI	ACGGC	2 cut(s)	148, 827
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	3 cut(s)	194, 442, 1110
BcoDI	GTCTC	2 cut(s)	130, 147
BfaI	CTAG	2 cut(s)	179, 1671
BfmI	CTRYAG	1 cut(s)	1629
BfoI	RGCGCY	1 cut(s)	662
BfrI	CTTAAG	1 cut(s)	1550
BfuAI	ACCTGC	3 cut(s)	64, 839, 922
BglII	AGATCT	1 cut(s)	1437
BisI	GCNGC	4 cut(s)	65, 238, 599, 1077
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	4 cut(s)	66, 239, 600, 1078
Bme1390I	CCNGG	3 cut(s)	194, 442, 1110
Bme18I	GGWCC	2 cut(s)	338, 1387
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	6 cut(s)	338, 416, 444, 638, 1206, 1387
BmiI	GGNNCC	4 cut(s)	113, 208, 640, 660
BmrFI	CCNGG	3 cut(s)	194, 442, 1110
BmrI	ACTGGG	2 cut(s)	564, 1201
BmsI	GCATC	3 cut(s)	60, 955, 1063
BmuI	ACTGGG	2 cut(s)	564, 1201
Bpu1102I	GCTNAGC	1 cut(s)	562
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	17, 659
BsaI	GGTCTC	2 cut(s)	130, 147
BsaJI	CCNNGG	3 cut(s)	153, 412, 440
BsaWI	WCCGGW	2 cut(s)	1515, 1615
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 701, 1384
Bse118I	RCCGGY	3 cut(s)	4, 114, 188
Bse1I	ACTGG	6 cut(s)	297, 474, 570, 1196, 1399, 1534
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	1515
BseBI	CCWGG	3 cut(s)	194, 442, 1110
BseDI	CCNNGG	3 cut(s)	153, 412, 440
BseGI	GGATG	6 cut(s)	454, 550, 970, 1078, 1319, 1495
BseLI	CCNNNNNNNGG	3 cut(s)	121, 701, 1384
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	6 cut(s)	158, 179, 576, 798, 1050, 1163
BseNI	ACTGG	6 cut(s)	297, 474, 570, 1196, 1399, 1534
BseRI	GAGGAG	4 cut(s)	783, 1128, 1361, 1577
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	249, 610
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1208
BshNI	GGYRCC	2 cut(s)	111, 658
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	5 cut(s)	5, 115, 189, 1516, 1616
BslI	CCNNNNNNNGG	3 cut(s)	121, 701, 1384
BsmAI	GTCTC	2 cut(s)	130, 147
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1208
Bso31I	GGTCTC	2 cut(s)	130, 147
BsoBI	CYCGRG	1 cut(s)	765
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp13I	TCCGGA	1 cut(s)	1515
Bsp143I	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
Bsp1720I	GCTNAGC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	7 cut(s)	26, 33, 45, 65, 253, 853, 1077
BspANI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1208
BspCNI	CTCAG	6 cut(s)	157, 178, 575, 799, 1051, 1162
BspEI	TCCGGA	1 cut(s)	1515
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	4 cut(s)	113, 208, 640, 660
BspMAI	CTGCAG	1 cut(s)	1633
BspMI	ACCTGC	3 cut(s)	64, 839, 922
BspPI	GGATC	2 cut(s)	750, 1607
BspT107I	GGYRCC	2 cut(s)	111, 658
BspTI	CTTAAG	1 cut(s)	1550
BspTNI	GGTCTC	2 cut(s)	130, 147
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	3 cut(s)	4, 114, 188
BsrI	ACTGG	6 cut(s)	297, 474, 570, 1196, 1399, 1534
BssAI	RCCGGY	3 cut(s)	4, 114, 188
BssECI	CCNNGG	3 cut(s)	153, 412, 440
BssMI	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
BssNI	GRCGYC	2 cut(s)	17, 659
BssT1I	CCWWGG	2 cut(s)	153, 412
Bst2UI	CCWGG	3 cut(s)	194, 442, 1110
Bst4CI	ACNGT	8 cut(s)	595, 624, 979, 987, 1144, 1201, 1278, 1600
BstACI	GRCGYC	2 cut(s)	17, 659
BstAFI	CTTAAG	1 cut(s)	1550
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	101, 150, 663, 1252
BstDEI	CTNAG	9 cut(s)	144, 165, 363, 562, 807, 1059, 1095, 1122, 1149
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	6 cut(s)	454, 550, 970, 1078, 1319, 1495
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	661, 919
BstKTI	GATC	8 cut(s)	52, 745, 1155, 1178, 1440, 1557, 1596, 1615
BstMAI	GTCTC	2 cut(s)	130, 147
BstMBI	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 32, 70, 158, 175, 719
BstNI	CCWGG	3 cut(s)	194, 442, 1110
BstNSI	RCATGY	2 cut(s)	1254, 1648
BstSCI	CCNGG	3 cut(s)	192, 440, 1108
BstSFI	CTRYAG	1 cut(s)	1629
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	249, 610
BstX2I	RGATCY	2 cut(s)	1437, 1612
BstYI	RGATCY	2 cut(s)	1437, 1612
BsuRI	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1208
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	6 cut(s)	454, 550, 970, 1078, 1319, 1495
BtsI	GCAGTG	3 cut(s)	351, 729, 1325
BtsIMutI	CAGTG	7 cut(s)	351, 577, 729, 1197, 1283, 1325, 1605
BveI	ACCTGC	3 cut(s)	64, 839, 922
Cac8I	GCNNGC	4 cut(s)	101, 150, 663, 1252
CfoI	GCGC	2 cut(s)	661, 919
Cfr10I	RCCGGY	3 cut(s)	4, 114, 188
Cfr13I	GGNCC	6 cut(s)	338, 416, 444, 638, 1206, 1387
CseI	GACGC	2 cut(s)	25, 737
Csp6I	GTAC	4 cut(s)	112, 229, 290, 1465
CviAII	CATG	5 cut(s)	121, 154, 1084, 1251, 1645
CviQI	GTAC	4 cut(s)	112, 229, 290, 1465
DdeI	CTNAG	9 cut(s)	144, 165, 363, 562, 807, 1059, 1095, 1122, 1149
DinI	GGCGCC	1 cut(s)	660
DpnI	GATC	8 cut(s)	51, 744, 1154, 1177, 1439, 1556, 1595, 1614
DpnII	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
EaeI	YGGCCR	2 cut(s)	190, 409
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	153, 412
Eco31I	GGTCTC	2 cut(s)	130, 147
Eco32I	GATATC	3 cut(s)	85, 894, 1364
Eco47I	GGWCC	2 cut(s)	338, 1387
Eco88I	CYCGRG	1 cut(s)	765
EcoO109I	RGGNCCY	2 cut(s)	416, 444
EcoRII	CCWGG	3 cut(s)	192, 440, 1108
EcoRV	GATATC	3 cut(s)	85, 894, 1364
EcoT14I	CCWWGG	2 cut(s)	153, 412
EgeI	GGCGCC	1 cut(s)	660
EheI	GGCGCC	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	153, 412
FaeI	CATG	5 cut(s)	124, 157, 1087, 1254, 1648
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FatI	CATG	5 cut(s)	120, 153, 1083, 1250, 1644
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	65, 238, 599, 1077
FokI	GGATG	6 cut(s)	441, 537, 977, 1085, 1326, 1502
Fsp4HI	GCNGC	4 cut(s)	65, 238, 599, 1077
FspBI	CTAG	2 cut(s)	179, 1671
FspI	TGCGCA	1 cut(s)	918
GlaI	GCGC	2 cut(s)	660, 918
GluI	GCNGC	4 cut(s)	65, 238, 599, 1077
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	6 cut(s)	192, 411, 418, 445, 639, 1208
HapII	CCGG	5 cut(s)	5, 115, 189, 1516, 1616
HgaI	GACGC	2 cut(s)	25, 737
HhaI	GCGC	2 cut(s)	661, 919
Hin1I	GRCGYC	2 cut(s)	17, 659
Hin1II	CATG	5 cut(s)	124, 157, 1087, 1254, 1648
Hin6I	GCGC	2 cut(s)	659, 917
HinP1I	GCGC	2 cut(s)	659, 917
HindIII	AAGCTT	2 cut(s)	1547, 1664
HinfI	GANTC	8 cut(s)	296, 313, 332, 436, 726, 803, 1232, 1424
HpaII	CCGG	5 cut(s)	5, 115, 189, 1516, 1616
HphI	GGTGA	4 cut(s)	59, 1420, 1600, 1630
Hpy166II	GTNNAC	2 cut(s)	886, 1621
Hpy188I	TCNGA	8 cut(s)	130, 301, 508, 587, 808, 939, 1152, 1180
Hpy8I	GTNNAC	2 cut(s)	886, 1621
Hpy99I	CGWCG	4 cut(s)	134, 215, 753, 1580
HpyAV	CCTTC	3 cut(s)	612, 699, 1157
HpyCH4III	ACNGT	8 cut(s)	595, 624, 979, 987, 1144, 1201, 1278, 1600
HpyCH4IV	ACGT	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 32, 70, 158, 175, 719
HpyF3I	CTNAG	9 cut(s)	144, 165, 363, 562, 807, 1059, 1095, 1122, 1149
HpySE526I	ACGT	1 cut(s)	667
Hsp92I	GRCGYC	2 cut(s)	17, 659
Hsp92II	CATG	5 cut(s)	124, 157, 1087, 1254, 1648
HspAI	GCGC	2 cut(s)	659, 917
KasI	GGCGCC	1 cut(s)	658
Kpn2I	TCCGGA	1 cut(s)	1515
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
LmnI	GCTCC	3 cut(s)	212, 571, 1518
Lsp1109I	GCAGC	2 cut(s)	249, 610
LweI	GCATC	3 cut(s)	60, 955, 1063
MaeI	CTAG	2 cut(s)	179, 1671
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	7 cut(s)	727, 826, 1117, 1195, 1241, 1322, 1408
MalI	GATC	8 cut(s)	51, 744, 1154, 1177, 1439, 1556, 1595, 1614
MboI	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
MboII	GAAGA	6 cut(s)	934, 1010, 1185, 1358, 1361, 1603
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	2 cut(s)	1437, 1612
MhlI	GDGCHC	1 cut(s)	992
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	6 cut(s)	370, 580, 1047, 1100, 1340, 1380
MluNI	TGGCCA	1 cut(s)	411
Mly113I	GGCGCC	1 cut(s)	659
MlyI	GAGTC	4 cut(s)	290, 341, 735, 797
MmeI	TCCRAC	3 cut(s)	153, 365, 1288
Mox20I	TGGCCA	1 cut(s)	411
MroI	TCCGGA	1 cut(s)	1515
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	7 cut(s)	681, 837, 908, 930, 1224, 1551, 1605
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	2 cut(s)	67, 1021
MspCI	CTTAAG	1 cut(s)	1550
MspI	CCGG	5 cut(s)	5, 115, 189, 1516, 1616
MspR9I	CCNGG	3 cut(s)	194, 442, 1110
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	3 cut(s)	194, 442, 1110
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	6 cut(s)	16, 32, 70, 158, 175, 719
NarI	GGCGCC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
NlaIII	CATG	5 cut(s)	124, 157, 1087, 1254, 1648
NlaIV	GGNNCC	4 cut(s)	113, 208, 640, 660
NmuCI	GTSAC	5 cut(s)	727, 826, 1195, 1322, 1408
NsbI	TGCGCA	1 cut(s)	918
NspI	RCATGY	2 cut(s)	1254, 1648
PaeI	GCATGC	1 cut(s)	1254
PaeR7I	CTCGAG	1 cut(s)	765
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	4 cut(s)	313, 436, 1232, 1424
PflFI	GACNNNGTC	1 cut(s)	1193
PkrI	GCNGC	4 cut(s)	66, 239, 600, 1078
PleI	GAGTC	4 cut(s)	290, 340, 734, 797
PluTI	GGCGCC	1 cut(s)	662
PpsI	GAGTC	4 cut(s)	290, 340, 734, 797
Ppu21I	YACGTR	1 cut(s)	668
PshBI	ATTAAT	1 cut(s)	681
Psp6I	CCWGG	3 cut(s)	192, 440, 1108
PspGI	CCWGG	3 cut(s)	192, 440, 1108
PspN4I	GGNNCC	4 cut(s)	113, 208, 640, 660
PspPI	GGNCC	6 cut(s)	338, 416, 444, 638, 1206, 1387
PspXI	VCTCGAGB	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	1633
PsuI	RGATCY	2 cut(s)	1437, 1612
PsyI	GACNNNGTC	1 cut(s)	1193
PvuII	CAGCTG	1 cut(s)	1021
RsaI	GTAC	4 cut(s)	113, 230, 291, 1466
RsaNI	GTAC	4 cut(s)	112, 229, 290, 1465
SaqAI	TTAA	7 cut(s)	681, 837, 908, 930, 1224, 1551, 1605
SatI	GCNGC	4 cut(s)	65, 238, 599, 1077
Sau3AI	GATC	8 cut(s)	49, 742, 1152, 1175, 1437, 1554, 1593, 1612
Sau96I	GGNCC	6 cut(s)	338, 416, 444, 638, 1206, 1387
SchI	GAGTC	4 cut(s)	290, 341, 735, 797
ScrFI	CCNGG	3 cut(s)	194, 442, 1110
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	3 cut(s)	60, 955, 1063
SfcI	CTRYAG	1 cut(s)	1629
SfoI	GGCGCC	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	765
SinI	GGWCC	2 cut(s)	338, 1387
SlaI	CTCGAG	1 cut(s)	765
SmlI	CTYRAG	2 cut(s)	765, 1550
SmoI	CTYRAG	2 cut(s)	765, 1550
SphI	GCATGC	1 cut(s)	1254
Sse9I	AATT	6 cut(s)	370, 580, 1047, 1100, 1340, 1380
SsiI	CCGC	7 cut(s)	26, 33, 45, 65, 253, 853, 1077
SspDI	GGCGCC	1 cut(s)	658
SspMI	CTAG	2 cut(s)	179, 1671
StyD4I	CCNGG	3 cut(s)	192, 440, 1108
StyI	CCWWGG	2 cut(s)	153, 412
TaaI	ACNGT	8 cut(s)	595, 624, 979, 987, 1144, 1201, 1278, 1600
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	766, 792, 1295
TasI	AATT	6 cut(s)	370, 580, 1047, 1100, 1340, 1380
TatI	WGTACW	3 cut(s)	228, 289, 1464
TauI	GCSGC	2 cut(s)	67, 1079
TfiI	GAWTC	4 cut(s)	313, 436, 1232, 1424
Tru1I	TTAA	7 cut(s)	681, 837, 908, 930, 1224, 1551, 1605
Tru9I	TTAA	7 cut(s)	681, 837, 908, 930, 1224, 1551, 1605
TscAI	CASTG	7 cut(s)	358, 577, 736, 1204, 1283, 1325, 1605
TseFI	GTSAC	5 cut(s)	727, 826, 1195, 1322, 1408
TseI	GCWGC	2 cut(s)	237, 598
Tsp45I	GTSAC	5 cut(s)	727, 826, 1195, 1322, 1408
TspDTI	ATGAA	5 cut(s)	443, 539, 1011, 1176, 1210
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	7 cut(s)	358, 577, 736, 1204, 1283, 1325, 1605
Tth111I	GACNNNGTC	1 cut(s)	1193
Vha464I	CTTAAG	1 cut(s)	1550
VpaK11BI	GGWCC	2 cut(s)	338, 1387
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	4 cut(s)	580, 1100, 1340, 1380
XceI	RCATGY	2 cut(s)	1254, 1648
XhoI	CTCGAG	1 cut(s)	765
XspI	CTAG	2 cut(s)	179, 1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.