MD15G1223400.v1.1

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017963
Physical Location & Seq
Reverse (-)
18155202 .. 18155906
705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1223400.v1.1.491

Sequence Viewer

Length: 378 bp
ATGCTTGTTGGAGATGGAATGAAATCAACAATAATCACAGGGTCTAAGAGCTTTGCAGATGGATTTTCCACCTTTGCTACAGCCACTTTAACTGTTACTGCTGTAATCGGGGATAAGTTCTTAGCTAGGGACCTGACCATAGCCAACACGGCAGGCTCAAAAAAGTTCCAGGCGGTTGCTGCAAGAGTGACCTCAAACTCTGCCTTCTACCACTGCAACTTCAGTTCATACCAAGACAGCCTCCACGTCCATTCGCTTCGCCAGTGCTACCGCGACTGCATCATCCAAGGCACGATTGATTTCATTTCGGAAATGCAGCTGCAGTCTTCCAAAACTGCGGGGTGGTTGTGCGAAAACCAGTCCCCGGACAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
PMEI Pectinesterase

Protein Analysis

126

Amino Acids

13.63

Weight (kDa)

8.4

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 1 - 102 6.1e-37 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017963)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09320
malus_domestica MD02G1100400.v1.1 MD15G1223400.v1.1
prunus_persica Prupe.7G192400_v2.0.a1
rosa_laevigata RLG00000016604
rosa_roxburghii Rroxscaffold_2G00145990
rosa_rugosa Rorug02G0053600
rosa_samantha Rh2AG102800 Rh2BG104200 Rh2CG106700 Rh2DG104400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 173, 271, 338
AcuI CTGAAG 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 364
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 51, 125, 319
AluI AGCT 3 cut(s) 51, 125, 319
ApeKI GCWGC 3 cut(s) 179, 316, 319
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 166, 306, 328
BccI CCATC 2 cut(s) 8, 53
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 1 cut(s) 365
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 78, 320
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 3 cut(s) 180, 317, 320
BlsI GCNGC 3 cut(s) 181, 318, 321
Bme1390I CCNGG 2 cut(s) 170, 365
Bme18I GGWCC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 170, 365
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 286, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 262, 358
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 286, 363
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 364
BseNI ACTGG 2 cut(s) 262, 358
BseXI GCAGC 3 cut(s) 166, 306, 328
Bsh1236I CGCG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 2 cut(s) 143, 346
BslI CCNNNNNNNGG 1 cut(s) 364
BsmFI GGGAC 2 cut(s) 143, 346
BspACI CCGC 3 cut(s) 173, 271, 338
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 324
BsrI ACTGG 2 cut(s) 262, 358
BssECI CCNNGG 2 cut(s) 286, 363
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 45, 121
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 149, 179
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 168, 363
BstSFI CTRYAG 2 cut(s) 78, 320
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 166, 306, 328
BstV2I GAAGAC 1 cut(s) 318
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 211, 269
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 130
CviJI RGCY 7 cut(s) 51, 83, 125, 143, 156, 240, 319
CviKI_1 RGCY 7 cut(s) 51, 83, 125, 143, 156, 240, 319
DdeI CTNAG 2 cut(s) 45, 121
Eco130I CCWWGG 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaiI YATR 2 cut(s) 140, 229
FaqI GGGAC 2 cut(s) 143, 346
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 180, 317, 320
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 3 cut(s) 180, 317, 320
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 180, 317, 320
HapII CCGG 1 cut(s) 365
HpaII CCGG 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 6 cut(s) 56, 182, 216, 279, 316, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 179
HpyF3I CTNAG 2 cut(s) 45, 121
HpySE526I ACGT 1 cut(s) 246
LpnPI CCDG 7 cut(s) 24, 138, 146, 155, 182, 275, 371
Lsp1109I GCAGC 3 cut(s) 166, 306, 328
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 94, 187
MboII GAAGA 1 cut(s) 318
MnlI CCTC 2 cut(s) 202, 251
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 170, 365
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 149, 179
NciI CCSGG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 187
PkrI GCNGC 3 cut(s) 181, 318, 321
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PstI CTGCAG 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 319
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 3 cut(s) 180, 317, 320
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 170, 365
SetI ASST 7 cut(s) 53, 74, 127, 135, 194, 249, 321
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 2 cut(s) 78, 320
SinI GGWCC 1 cut(s) 130
SsiI CCGC 3 cut(s) 173, 271, 338
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 168, 363
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 249
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 2 cut(s) 218, 269
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 3 cut(s) 179, 316, 319
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 35, 216, 292
TspRI CASTG 2 cut(s) 218, 269
VpaK11BI GGWCC 1 cut(s) 130
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.