Rh2AG102800

Pectinesterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017963
Physical Location & Seq
Reverse (-)
8822648 .. 8823049
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG102800.1

Sequence Viewer

Length: 402 bp
ATGCGCTCAAAGATTGCCTGTAGATGTTTGATCAAACACTCTATGAACTTGGTGAGGCTCTTGATGATCTGCCAGCCTCAAAAGGGTCCTATGGTGACAAATGTGAAAACTTGCGTTGATGGGTTTTTCGAATTGGAGGAATTGGACTGGAAAATGAAAAGGCTAAACTTCAAAGACCAAATCCAGGGTTTAGTGACTCCTATTTCTCATATGATGAGTAATTGCTTAGCAATGATTAAAAACATTGAAGAATTAGTACCAAGTGAGCAGAAGAGGGTTAAAAGTACCAAGAAGTCTTCAAAGAAAAGAAGGCGAGTGGAAGTTACATTCTTTGCAGCTGTAATTGGGGACAGGTTTTTGGCTAGGGACTTGACCATTACCAACACAGCAGGTTCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
PMEI Pectinesterase

Protein Analysis

133

Amino Acids

15.28

Weight (kDa)

9.93

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017963)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09320
malus_domestica MD02G1100400.v1.1 MD15G1223400.v1.1
prunus_persica Prupe.7G192400_v2.0.a1
rosa_laevigata RLG00000016604
rosa_roxburghii Rroxscaffold_2G00145990
rosa_rugosa Rorug02G0053600
rosa_samantha Rh2AG102800 Rh2BG104200 Rh2CG106700 Rh2DG104400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 380
AfaI GTAC 2 cut(s) 258, 286
AfiI CCNNNNNNNGG 2 cut(s) 83, 184
AgsI TTSAA 3 cut(s) 172, 248, 300
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 64, 106
AsuII TTCGAA 1 cut(s) 129
AvaII GGWCC 1 cut(s) 86
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 185
BclI TGATCA 1 cut(s) 30
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 380
BisI GCNGC 1 cut(s) 336
BlpI GCTNAGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 226
Bpu14I TTCGAA 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 184
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 83, 184
BseMI GCAATG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 347
BslFI GGGAC 2 cut(s) 362, 380
BslI CCNNNNNNNGG 2 cut(s) 83, 184
BsmFI GGGAC 2 cut(s) 362, 380
Bsp119I TTCGAA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 30, 66
Bsp1720I GCTNAGC 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 2 cut(s) 30, 66
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 33, 69
BstMBI GATC 2 cut(s) 30, 66
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 288
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 257, 285
CviJI RGCY 5 cut(s) 58, 76, 163, 338, 362
CviKI_1 RGCY 5 cut(s) 58, 76, 163, 338, 362
CviQI GTAC 2 cut(s) 257, 285
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 32, 68
DpnII GATC 2 cut(s) 30, 66
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 183
FaiI YATR 4 cut(s) 44, 92, 210, 212
FaqI GGGAC 2 cut(s) 362, 380
FauNDI CATATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 336
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 196
HphI GGTGA 2 cut(s) 64, 106
Hpy166II GTNNAC 1 cut(s) 395
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 226
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 2 cut(s) 30, 66
LpnPI CCDG 7 cut(s) 31, 86, 133, 170, 197, 337, 375
Lsp1109I GCAGC 1 cut(s) 347
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 94, 193, 322
MalI GATC 2 cut(s) 32, 68
MboI GATC 2 cut(s) 30, 66
MboII GAAGA 3 cut(s) 260, 283, 288
MluCI AATT 5 cut(s) 131, 140, 220, 251, 342
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 4 cut(s) 48, 87, 130, 267
MseI TTAA 2 cut(s) 237, 279
MspA1I CMGCKG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 210
NdeII GATC 2 cut(s) 30, 66
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 94, 193
NspV TTCGAA 1 cut(s) 129
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 258, 286
RsaNI GTAC 2 cut(s) 257, 285
SaqAI TTAA 2 cut(s) 237, 279
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 30, 66
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 340, 356, 394
SfcI CTRYAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 1 cut(s) 86
Sse9I AATT 5 cut(s) 131, 140, 220, 251, 342
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 183
TaqI TCGA 1 cut(s) 129
TasI AATT 5 cut(s) 131, 140, 220, 251, 342
Tru1I TTAA 2 cut(s) 237, 279
Tru9I TTAA 2 cut(s) 237, 279
TseFI GTSAC 2 cut(s) 94, 193
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 94, 193
TspDTI ATGAA 2 cut(s) 59, 170
VpaK11BI GGWCC 1 cut(s) 86
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.