Rh2CG106700

Pectinesterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017963
Physical Location & Seq
Reverse (-)
9278950 .. 9279240
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG106700.1

Sequence Viewer

Length: 291 bp
ATGCTCACTCACTTAGACAGTTCTATCGCTAATGCGTTTATCAAAGGGACTATAGATTTCATCTTTGGCAGTGCCGCTGTGGTGTTCCAAAACCGTTTGGTGGTTGTTAGGAAGCTGATTCCTGGTCAGCAAGTGATGATCACTGCACAGGGGAGAACAGACCCGAACCAAAACACCGGCACCTCATTGCAGAATTGTACCATAGTGGCTGCGCCTGATTTCAGCGAGGCTGAGAGGAAAAACTTCACTATTTTTTGGGTAGGCCTAGGAGGAAGAGGAACTATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
PMEI Pectinesterase

Protein Analysis

96

Amino Acids

10.41

Weight (kDa)

9.18

Isoelectric Point (pI)

11.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 11 - 81 9.5e-23 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017963)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09320
malus_domestica MD02G1100400.v1.1 MD15G1223400.v1.1
prunus_persica Prupe.7G192400_v2.0.a1
rosa_laevigata RLG00000016604
rosa_roxburghii Rroxscaffold_2G00145990
rosa_rugosa Rorug02G0053600
rosa_samantha Rh2AG102800 Rh2BG104200 Rh2CG106700 Rh2DG104400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 1 cut(s) 75
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 242
AspA2I CCTAGG 1 cut(s) 265
AspLEI GCGC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 265
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 75, 210
BlnI CCTAGG 1 cut(s) 265
BlsI GCNGC 2 cut(s) 76, 211
Bme1390I CCNGG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 20, 95
Bst6I CTCTTC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 13, 231
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 264
BtsI GCAGTG 2 cut(s) 76, 141
BtsIMutI CAGTG 2 cut(s) 76, 141
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 176
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 4 cut(s) 115, 209, 230, 264
CviKI_1 RGCY 4 cut(s) 115, 209, 230, 264
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 2 cut(s) 13, 231
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaiI YATR 2 cut(s) 53, 203
FaqI GGGAC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 75, 210
Fsp4HI GCNGC 2 cut(s) 75, 210
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 75, 210
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 177
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 177
HpyCH4III ACNGT 2 cut(s) 20, 95
HpyCH4V TGCA 2 cut(s) 146, 190
HpyF3I CTNAG 2 cut(s) 13, 231
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 108, 134, 135, 190, 228
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 266
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 285
MluCI AATT 1 cut(s) 193
MnlI CCTC 5 cut(s) 193, 220, 228, 263, 269
MroXI GAANNNNTTC 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 76, 211
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 181
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SatI GCNGC 2 cut(s) 75, 210
Sau3AI GATC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 123
SetI ASST 2 cut(s) 117, 185
SfcI CTRYAG 1 cut(s) 51
SgeI CNNG 9 cut(s) 134, 135, 143, 161, 175, 189, 227, 238, 278
Sse9I AATT 1 cut(s) 193
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 20, 95
TasI AATT 1 cut(s) 193
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 2 cut(s) 76, 148
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 2 cut(s) 76, 148
XmaJI CCTAGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.