Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005373

Physical Location & Seq

Genomic Coordinates Forward (+)

29019538 .. 29021846

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1301700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTGCATATCAAAGCTGGACGCTTTACTTTTAGAATGGATGGAGAAGCTGAAGTTATTAGTGCCCGAGGGAGAGGAAGTGGGATCGTGGCTTCTTTAGTGGTGCAGGAGAAACTGAACTTCAACTCTAACGATGAAGAAAGGAGGAATAGTCTGTTATCACAAATTCAAGATGTTCGTCGTACTCAAGCTGTGCAACACACTGGTCACAAGAATCATGGAGGATCTTATGGTCAAGGTTTACCTACTGTTGCTGTTTTTGGGTATACAAATGTTCATGTGTTGGATTGTACGGCTCCTAATCTTGATGATCATCGATCGACTGTATTACAAATTCTTGAGCAAATTGGCATATCCAAGGAAAAGCTTGAAAACATGATAGAAGTTTGGAATAAGATTTTGATGAATGTCTTGTTGGCGGTGAAGATGGGGAGGCTAGCAATGGAATGTGAGCTCTCAGGAGCAGAAAATGATTCGTCACATGAGAATCTTGAAGCTATGGATGACCAAGAAGGTGATTACTCTGATGGTTGGTTGTCATCATTAGATGTCGAAGATCATTGGGGGGGAAATGGGTCCTATACAACCTTGAAAACTACGGATGACCAACAAAGCGAATATCCCAATGACTCAGGAATAGAAAAGCAATGGCAATCACCAGTTCAGTCCAGTCCGCATGTTAGAACATCTGCCTTAATGGGAGTTGGGTTGCAAGAGTTGTTGAAGCTCATAGATGAGAAGCTGCAGAAGCTTACAAAGGAAAATGTTGTGGAAAAGGGGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043021 GO:0043022 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

263

Amino Acids

29.17

Weight (kDa)

5.05

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49725
fragaria_vesca	FvH4_1g18350 FvH4_1g18350 FvH4_2g33620
malus_domestica	MD02G1190600.v1.1 MD15G1301700.v1.1
prunus_persica	Prupe.6G215400_v2.0.a1
pyrus_communis	pycom02g15480
rosa_chinensis	RchiOBHm_Chr1g0321831 RchiOBHm_Chr2g0109061
rosa_laevigata	RLG00000017702 RLG00000030403
rosa_multiflora	Rmu_sc0003410.1_g000017 Rmu_sc0003725.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134610 Rroxscaffold_4G00327480
rosa_rugosa	Rorug01G0034200 Rorug02G0156900
rosa_samantha	Rh1AG047200 Rh1BG045300 Rh1CG050900 Rh1DG055200 Rh2AG207700 Rh2BG219000 Rh2CG211100 Rh2DG214100
rosa_wichuraiana	Rw0G004050 Rw1G004200 Rw2G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	2 cut(s)	419, 674
AclWI	GGATC	2 cut(s)	92, 232
AcsI	RAATTY	2 cut(s)	165, 333
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	184, 292, 782
AgsI	TTSAA	6 cut(s)	124, 170, 371, 494, 592, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	9 cut(s)	17, 50, 191, 367, 454, 497, 727, 742, 751
AluI	AGCT	9 cut(s)	17, 50, 191, 367, 454, 497, 727, 742, 751
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	92, 232
Ama87I	CYCGRG	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	4, 742
ApoI	RAATTY	2 cut(s)	165, 333
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	433, 527, 648
AsuNHI	GCTAGC	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	729
BccI	CCATC	3 cut(s)	35, 421, 521
BceAI	ACGGC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	310
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	743
BisI	GCNGC	2 cut(s)	5, 743
BlsI	GCNGC	2 cut(s)	6, 744
Bme18I	GGWCC	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	297, 577
BmtI	GCTAGC	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	171, 359
Bsa29I	ATCGAT	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	67, 357
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 136, 166
Bse1I	ACTGG	3 cut(s)	208, 659, 669
Bse3DI	GCAATG	2 cut(s)	447, 653
Bse8I	GATNNNNATC	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	67, 357
BseGI	GGATG	3 cut(s)	46, 508, 607
BseJI	GATNNNNATC	1 cut(s)	312
BseMI	GCAATG	2 cut(s)	447, 653
BseMII	CTCAG	2 cut(s)	471, 645
BseNI	ACTGG	3 cut(s)	208, 659, 669
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	729
BsgI	GTGCAG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	67, 456
Bsp143I	GATC	5 cut(s)	84, 224, 310, 317, 556
BspACI	CCGC	2 cut(s)	419, 674
BspCNI	CTCAG	2 cut(s)	470, 644
BspDI	ATCGAT	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	297, 577
BspMAI	CTGCAG	1 cut(s)	747
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	92, 232
BsrDI	GCAATG	2 cut(s)	447, 653
BsrI	ACTGG	3 cut(s)	208, 659, 669
BssECI	CCNNGG	2 cut(s)	67, 357
BssMI	GATC	5 cut(s)	84, 224, 310, 317, 556
BssNAI	GTATAC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	250, 325
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	457, 631
BstF5I	GGATG	3 cut(s)	46, 508, 607
BstKTI	GATC	5 cut(s)	87, 227, 313, 320, 559
BstMBI	GATC	5 cut(s)	84, 224, 310, 317, 556
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	748
BstNSI	RCATGY	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	743
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	316
BsuTUI	ATCGAT	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	46, 508, 607
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	576
ClaI	ATCGAT	1 cut(s)	316
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	183, 291, 781
CviAII	CATG	5 cut(s)	218, 278, 376, 482, 677
CviQI	GTAC	3 cut(s)	183, 291, 781
DdeI	CTNAG	2 cut(s)	457, 631
DpnI	GATC	5 cut(s)	86, 226, 312, 319, 558
DpnII	GATC	5 cut(s)	84, 224, 310, 317, 556
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	221, 281, 379, 485, 680
FatI	CATG	5 cut(s)	217, 277, 375, 481, 676
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	5, 743
FokI	GGATG	3 cut(s)	53, 515, 614
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	5, 743
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	2 cut(s)	5, 743
HgaI	GACGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	221, 281, 379, 485, 680
HindIII	AAGCTT	2 cut(s)	365, 749
HinfI	GANTC	4 cut(s)	214, 473, 487, 629
HphI	GGTGA	3 cut(s)	433, 527, 648
Hpy166II	GTNNAC	2 cut(s)	242, 267
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	6 cut(s)	170, 305, 338, 459, 491, 633
Hpy8I	GTNNAC	2 cut(s)	242, 267
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	250, 325
HpyCH4V	TGCA	5 cut(s)	7, 106, 196, 712, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	748
HpyF3I	CTNAG	2 cut(s)	457, 631
Hsp92II	CATG	5 cut(s)	221, 281, 379, 485, 680
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	84, 224, 310, 317, 556
LmnI	GCTCC	2 cut(s)	301, 461
LpnPI	CCDG	7 cut(s)	3, 92, 189, 444, 618, 672, 682
Lsp1109I	GCAGC	1 cut(s)	729
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	206, 477
MalI	GATC	5 cut(s)	86, 226, 312, 319, 558
MboI	GATC	5 cut(s)	84, 224, 310, 317, 556
MboII	GAAGA	3 cut(s)	149, 436, 566
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	67, 456
MluCI	AATT	3 cut(s)	165, 333, 345
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	62, 68, 138, 215, 426
MseI	TTAA	1 cut(s)	695
MwoI	GCNNNNNNNGC	1 cut(s)	748
NdeII	GATC	5 cut(s)	84, 224, 310, 317, 556
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	5 cut(s)	221, 281, 379, 485, 680
NlaIV	GGNNCC	2 cut(s)	297, 577
NmuCI	GTSAC	2 cut(s)	206, 477
NspI	RCATGY	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	214, 473, 487
PkrI	GCNGC	2 cut(s)	6, 744
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PpuMI	RGGWCCY	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	297, 577
PspPI	GGNCC	1 cut(s)	576
PspPPI	RGGWCCY	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	184, 292, 782
RsaNI	GTAC	3 cut(s)	183, 291, 781
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	2 cut(s)	5, 743
Sau3AI	GATC	5 cut(s)	84, 224, 310, 317, 556
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	2 cut(s)	67, 456
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	186, 338
SmoI	CTYRAG	2 cut(s)	186, 338
Sse9I	AATT	3 cut(s)	165, 333, 345
SsiI	CCGC	2 cut(s)	419, 674
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	250, 325
TaqI	TCGA	3 cut(s)	316, 320, 552
TasI	AATT	3 cut(s)	165, 333, 345
TfiI	GAWTC	3 cut(s)	214, 473, 487
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	206, 477
TseI	GCWGC	2 cut(s)	4, 742
Tsp45I	GTSAC	2 cut(s)	206, 477
TspDTI	ATGAA	3 cut(s)	150, 266, 419
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	2 cut(s)	165, 333
XceI	RCATGY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.