Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005373

Physical Location & Seq

Genomic Coordinates Reverse (-)

5815040 .. 5815402

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0034200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAAATGCTCAATCTTCCTTTCATGGTTTTGGCTGCCTTTGCGTTGATAGTAATTTTATTCTCCAGTGAAGTCGATGTGGTTCTGGGGCAGGCTTGCCAAGGTGATATGCAAGGTCTGATGACGCAATGTGCGGGTTATGTTCAGAAGGGTACTCTATTGCCGCCAAAGCCATCTCAAGGATGCTGCACGGCAATAAAAACGTTAGACATTCCATGCGCGTGCCAGCACGTGACGAAGATGGTCGAGCAGCTGGTTGACATGGACAAGGTGGTTAAGGTTGTTAGATCCTGTGGTATCCTTATTCCTAGTGGAATGAAGTGTGGAAGTAAGATTCTAAATCAACCTCTTTCTCATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043021 GO:0043022 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

120

Amino Acids

12.86

Weight (kDa)

7.53

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	26 - 108	1.1e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 108	3.3e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49725
fragaria_vesca	FvH4_1g18350 FvH4_1g18350 FvH4_2g33620
malus_domestica	MD02G1190600.v1.1 MD15G1301700.v1.1
prunus_persica	Prupe.6G215400_v2.0.a1
pyrus_communis	pycom02g15480
rosa_chinensis	RchiOBHm_Chr1g0321831 RchiOBHm_Chr2g0109061
rosa_laevigata	RLG00000017702 RLG00000030403
rosa_multiflora	Rmu_sc0003410.1_g000017 Rmu_sc0003725.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134610 Rroxscaffold_4G00327480
rosa_rugosa	Rorug01G0034200 Rorug02G0156900
rosa_samantha	Rh1AG047200 Rh1BG045300 Rh1CG050900 Rh1DG055200 Rh2AG207700 Rh2BG219000 Rh2CG211100 Rh2DG214100
rosa_wichuraiana	Rw0G004050 Rw1G004200 Rw2G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	221
AciI	CCGC	2 cut(s)	134, 164
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AlwI	GGATC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	35, 186, 250
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	22, 173, 262
BccI	CCATC	2 cut(s)	181, 235
BceAI	ACGGC	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	308
BisI	GCNGC	4 cut(s)	36, 164, 187, 251
BlsI	GCNGC	4 cut(s)	37, 165, 188, 252
BmsI	GCATC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	22, 173, 262
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	2 cut(s)	134, 164
BspFNI	CGCG	1 cut(s)	221
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	93, 97, 223, 227
BstF5I	GGATG	1 cut(s)	188
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 169
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	22, 173, 262
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	4 cut(s)	93, 97, 223, 227
CfoI	GCGC	1 cut(s)	221
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	3 cut(s)	25, 216, 262
CviJI	RGCY	4 cut(s)	35, 95, 172, 253
CviKI_1	RGCY	4 cut(s)	35, 95, 172, 253
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	28, 219, 265
FaiI	YATR	6 cut(s)	26, 110, 141, 217, 263, 357
FatI	CATG	3 cut(s)	24, 215, 261
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	36, 164, 187, 251
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	36, 164, 187, 251
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	4 cut(s)	36, 164, 187, 251
GsuI	CTGGAG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	28, 219, 265
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	120, 147
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	203, 231
HpyCH4V	TGCA	2 cut(s)	112, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 169
HpySE526I	ACGT	2 cut(s)	203, 231
Hsp92II	CATG	3 cut(s)	28, 219, 265
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	287
LpnPI	CCDG	6 cut(s)	71, 77, 79, 239, 239, 304
Lsp1109I	GCAGC	3 cut(s)	22, 173, 262
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	203, 231
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	8, 250
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	276, 361
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	41, 169
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	28, 219, 265
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	37, 165, 188, 252
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	232
Psp1406I	AACGTT	1 cut(s)	203
PspCI	CACGTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	276, 361
SatI	GCNGC	4 cut(s)	36, 164, 187, 251
Sau3AI	GATC	1 cut(s)	287
SetI	ASST	8 cut(s)	106, 118, 206, 234, 255, 273, 282, 349
SfaNI	GCATC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	134, 164
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	2 cut(s)	206, 234
TaqI	TCGA	2 cut(s)	75, 246
TasI	AATT	1 cut(s)	54
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	2 cut(s)	276, 361
Tru9I	TTAA	2 cut(s)	276, 361
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	35, 186, 250
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	13, 332
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.