RchiOBHm_Chr2g0109061

GTP-BINDING protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005373
Physical Location & Seq
Forward (+)
20461809 .. 20465705
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48291

Sequence Viewer

Length: 1347 bp
ATGTTAATGTGCATTTCAAATTCAACAGGATCAAGTGGATGCTGTTTTTGTGAATACAACTCTGTCTGGAATTCAGCAGAGGAACTTGGAGTGTTGGGCAAACCAGTCTTGGACCGTGTGGGTCTAATAATAGAGATTTTCAATGCTCATGCCTGCACAAAGGAGGGAAAGCTTCAGGCCGAGTTAGCAGCACTAATGTATAAGAAAACAAGACTTATACGAATGCGTGGTCCAGGTGGACGCTTAGGTTTTGGAATGGGTGGAGAAGCTGAAGTTGTTAGTGCCCGAGGGAGAGGAAATGCTGGAGCTGGATTCATTAGTGGGGCAGGAGAAACTGAACTTCAACTTCAACGACGAAGAATTTTAGAAAGGAGGAGTAGTCTGCTGCAACAAATTAAGGATGTTCGTCGTACTCGAGCTGTGCAACGTGCTTCTCGCAAGAGGCATGGAAGCTCTGGTCAAGGCTTAGCTACTGTTGCTGTTGTGGGGTATACAAATGCTGGGAAATCTACATTGGTGAGTGCCCTCTCACATAGTGATCTCTACAGTGATTCTCGATTGTTTGCAACAGTTGACCCTAGATTGAGAAGTGTACTTCTTCCTTCAGGGAGGAAAGTGCTTGTTAGCGATACAGTAGGATTTATTTCAGATTTGCCAGTGCAGTTGGTGGAAGCATTTCATGCGACTTTAGAAGAAGTTGTGGAGGCTGATCTGCTTGTGCATGTGTTGGATTGCACTGCTCCTAATCTTGAGGAGCACCGATCAACTGTGTTACATGTTCTTGAGCAAATCGGTGTATCCAAGGAGAAGCTTGAGAATATGATAGAAGTTTGGAATAAGATTGACAATGAGGGAGAGGATAGGGGAATGGATGTTAATGAATCTCTTGATGATGGTGAAGATGGTGAAGATGGTGAGGTGAGCGGCCTCTCAGAAGAAGATGATGTGGAGTCTGAGCTGTCACCAGGAGCAGCAAACTGTAAGGCTGATGATTCTTTGTCTGAGCTGTCAGCAGAGAATCCCGAAGCGTTGGATGACCAAGAACTCGATTCAGAAGATAACCAAGATCATTGGGGTGAAGAAGGTGGTTTCAGCATGGGCTCTAAGACTCTGAATGACCAACAAAGTGAGTCCCCTAAGGACTGGGCAGTGGAAAAACAATTGCAATCACAAGCTCCATCTGGTCCACATGTTAGAACTTCTGCCATAACGGGAGTCGGCTTGCAAGAGTTGTTAGAGCTCATTGATGAGAAACTGAAGGTCCCAAATGTTGTGGAAAAGGGTGTATTTGATCGAAAATGGAGGCCCCCTCGTACAGAGGAGGCGGGGCTAGCAGTTGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043021 GO:0043022 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

448

Amino Acids

48.68

Weight (kDa)

4.78

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP-bdg_M PF16360 50 - 146 3.5e-14 GTP-binding GTPase Middle Region
MMR_HSR1 PF01926 158 - 280 6.8e-16 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 924
AccI GTMKAC 1 cut(s) 491
AciI CCGC 2 cut(s) 924, 1325
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 3 cut(s) 19, 70, 360
AcuI CTGAAG 4 cut(s) 158, 291, 588, 1277
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 3 cut(s) 412, 594, 1315
AflIII ACRYGT 2 cut(s) 775, 1189
AgsI TTSAA 6 cut(s) 18, 24, 142, 344, 350, 1340
AjnI CCWGG 2 cut(s) 232, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
Alw21I GWGCWC 2 cut(s) 759, 1242
AlwI GGATC 1 cut(s) 37
Ama87I CYCGRG 2 cut(s) 285, 414
AoxI GGCC 3 cut(s) 177, 925, 1304
ApeKI GCWGC 3 cut(s) 188, 385, 971
ApoI RAATTY 3 cut(s) 19, 70, 360
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 5 cut(s) 112, 230, 1184, 1261, 1305
AsuHPI GGTGA 7 cut(s) 529, 908, 917, 926, 931, 954, 1088
AsuNHI GCTAGC 1 cut(s) 1330
AvaI CYCGRG 2 cut(s) 285, 414
AvaII GGWCC 4 cut(s) 112, 230, 1184, 1261
AxyI CCTNAGG 1 cut(s) 1137
BaeGI GKGCMC 2 cut(s) 286, 526
BanII GRGCYC 2 cut(s) 1103, 1242
Bbv12I GWGCWC 2 cut(s) 759, 1242
BbvI GCAGC 3 cut(s) 200, 372, 983
BccI CCATC 4 cut(s) 887, 896, 905, 1186
BciT130I CCWGG 2 cut(s) 234, 966
BciVI GTATCC 1 cut(s) 808
BfaI CTAG 2 cut(s) 579, 1331
BfmI CTRYAG 1 cut(s) 544
BfuI GTATCC 1 cut(s) 808
BisI GCNGC 4 cut(s) 189, 386, 925, 972
BlpI GCTNAGC 1 cut(s) 466
BlsI GCNGC 4 cut(s) 190, 387, 926, 973
Bme1390I CCNGG 2 cut(s) 234, 966
Bme18I GGWCC 4 cut(s) 112, 230, 1184, 1261
BmeT110I CYCGRG 2 cut(s) 285, 414
BmgT120I GGNCC 5 cut(s) 112, 230, 1184, 1261, 1305
BmiI GGNNCC 2 cut(s) 1263, 1307
BmrFI CCNGG 2 cut(s) 234, 966
BmrI ACTGGG 1 cut(s) 1153
BmsI GCATC 1 cut(s) 29
BmtI GCTAGC 1 cut(s) 1334
BmuI ACTGGG 1 cut(s) 1153
BplI GAGNNNNNCTC 2 cut(s) 1294, 1326
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 466
BpuEI CTTGAG 3 cut(s) 770, 803, 833
BsaJI CCNNGG 2 cut(s) 286, 801
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse1I ACTGG 3 cut(s) 104, 656, 1148
Bse21I CCTNAGG 1 cut(s) 1137
BseBI CCWGG 2 cut(s) 234, 966
BseDI CCNNGG 2 cut(s) 286, 801
BseGI GGATG 4 cut(s) 44, 406, 877, 1039
BseMII CTCAG 3 cut(s) 945, 945, 993
BseNI ACTGG 3 cut(s) 104, 656, 1148
BseRI GAGGAG 3 cut(s) 388, 767, 1334
BseSI GKGCMC 2 cut(s) 286, 526
BseXI GCAGC 3 cut(s) 200, 372, 983
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 2 cut(s) 139, 680
BshFI GGCC 3 cut(s) 179, 927, 1306
BsiHKAI GWGCWC 2 cut(s) 759, 1242
BsiHKCI CYCGRG 2 cut(s) 285, 414
BslFI GGGAC 2 cut(s) 1117, 1247
BsmFI GGGAC 2 cut(s) 1117, 1247
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 3 cut(s) 179, 927, 1306
BsoBI CYCGRG 2 cut(s) 285, 414
Bsp1286I GDGCHC 5 cut(s) 286, 526, 759, 1103, 1242
Bsp143I GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
Bsp1720I GCTNAGC 1 cut(s) 466
BspACI CCGC 2 cut(s) 924, 1325
BspANI GGCC 3 cut(s) 179, 927, 1306
BspCNI CTCAG 3 cut(s) 944, 946, 994
BspLI GGNNCC 2 cut(s) 1263, 1307
BspOI GCTAGC 1 cut(s) 1334
BspPI GGATC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 924
BsrI ACTGG 3 cut(s) 104, 656, 1148
BssECI CCNNGG 2 cut(s) 286, 801
BssMI GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
BssNAI GTATAC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 801
Bst1107I GTATAC 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 234, 966
Bst4CI ACNGT 7 cut(s) 116, 475, 548, 571, 634, 769, 980
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 154, 1223, 1332
BstDEI CTNAG 7 cut(s) 244, 466, 931, 954, 1002, 1104, 1137
BstF5I GGATG 4 cut(s) 44, 406, 877, 1039
BstKTI GATC 6 cut(s) 32, 541, 712, 764, 1069, 1294
BstMBI GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
BstMWI GCNNNNNNNGC 4 cut(s) 185, 476, 680, 1331
BstNI CCWGG 2 cut(s) 234, 966
BstNSI RCATGY 3 cut(s) 725, 779, 1193
BstSCI CCNGG 2 cut(s) 232, 964
BstSFI CTRYAG 1 cut(s) 544
BstSLI GKGCMC 2 cut(s) 286, 526
BstV1I GCAGC 3 cut(s) 200, 372, 983
BstZ17I GTATAC 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 808
BsuRI GGCC 3 cut(s) 179, 927, 1306
BtsCI GGATG 4 cut(s) 44, 406, 877, 1039
BtsI GCAGTG 2 cut(s) 735, 1155
BtsIMutI CAGTG 4 cut(s) 553, 663, 735, 1155
Cac8I GCNNGC 3 cut(s) 154, 1223, 1332
Cfr13I GGNCC 5 cut(s) 112, 230, 1184, 1261, 1305
CseI GACGC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 411, 593, 1314
CspCI CAANNNNNGTGG 2 cut(s) 1254, 1289
CviAII CATG 7 cut(s) 149, 446, 680, 722, 776, 1096, 1190
CviQI GTAC 3 cut(s) 411, 593, 1314
DdeI CTNAG 7 cut(s) 244, 466, 931, 954, 1002, 1104, 1137
DpnI GATC 6 cut(s) 31, 540, 711, 763, 1068, 1293
DpnII GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
DraIII CACNNNGTG 1 cut(s) 536
Ecl136II GAGCTC 1 cut(s) 1240
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 2 cut(s) 1103, 1242
Eco47I GGWCC 4 cut(s) 112, 230, 1184, 1261
Eco53kI GAGCTC 1 cut(s) 1240
Eco57I CTGAAG 4 cut(s) 158, 291, 588, 1277
Eco81I CCTNAGG 1 cut(s) 1137
Eco88I CYCGRG 2 cut(s) 285, 414
EcoICRI GAGCTC 1 cut(s) 1240
EcoO109I RGGNCCY 2 cut(s) 1261, 1305
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 232, 964
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 2 cut(s) 1103, 1242
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 7 cut(s) 152, 449, 683, 725, 779, 1099, 1193
FaqI GGGAC 2 cut(s) 1117, 1247
FatI CATG 7 cut(s) 148, 445, 679, 721, 775, 1095, 1189
FauI CCCGC 1 cut(s) 1318
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 4 cut(s) 189, 386, 925, 972
FokI GGATG 4 cut(s) 51, 413, 884, 1046
FriOI GRGCYC 2 cut(s) 1103, 1242
Fsp4HI GCNGC 4 cut(s) 189, 386, 925, 972
FspBI CTAG 2 cut(s) 579, 1331
GluI GCNGC 4 cut(s) 189, 386, 925, 972
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 179, 927, 1306
HgaI GACGC 1 cut(s) 249
Hin1II CATG 7 cut(s) 152, 449, 683, 725, 779, 1099, 1193
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 2 cut(s) 170, 809
HphI GGTGA 7 cut(s) 529, 908, 917, 926, 931, 954, 1088
Hpy166II GTNNAC 5 cut(s) 239, 492, 574, 593, 1187
Hpy188I TCNGA 6 cut(s) 649, 934, 955, 1003, 1054, 1113
Hpy188III TCNNGA 6 cut(s) 67, 555, 749, 782, 887, 1022
Hpy8I GTNNAC 5 cut(s) 239, 492, 574, 593, 1187
Hpy99I CGWCG 2 cut(s) 357, 411
HpyAV CCTTC 3 cut(s) 612, 1076, 1252
HpyCH4III ACNGT 7 cut(s) 116, 475, 548, 571, 634, 769, 980
HpyCH4IV ACGT 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 476, 680, 1331
HpyF3I CTNAG 7 cut(s) 244, 466, 931, 954, 1002, 1104, 1137
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 7 cut(s) 152, 449, 683, 725, 779, 1099, 1193
Kzo9I GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
LmnI GCTCC 5 cut(s) 305, 745, 754, 968, 1180
Lsp1109I GCAGC 3 cut(s) 200, 372, 983
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 579, 1331
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 771, 960
MalI GATC 6 cut(s) 31, 540, 711, 763, 1068, 1293
MbiI CCGCTC 1 cut(s) 924
MboI GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
MboII GAAGA 9 cut(s) 369, 590, 704, 911, 920, 947, 950, 1067, 1091
MfeI CAATTG 1 cut(s) 1160
MhlI GDGCHC 5 cut(s) 286, 526, 759, 1103, 1242
MluCI AATT 5 cut(s) 19, 70, 360, 393, 1160
MlyI GAGTC 4 cut(s) 959, 1102, 1139, 1224
MmeI TCCRAC 2 cut(s) 708, 1011
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 3 cut(s) 5, 396, 876
MslI CAYNNNNRTG 1 cut(s) 1074
MspR9I CCNGG 2 cut(s) 234, 966
MunI CAATTG 1 cut(s) 1160
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 2 cut(s) 234, 966
MwoI GCNNNNNNNGC 4 cut(s) 185, 476, 680, 1331
NdeII GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
NheI GCTAGC 1 cut(s) 1330
NlaIII CATG 7 cut(s) 152, 449, 683, 725, 779, 1099, 1193
NlaIV GGNNCC 2 cut(s) 1263, 1307
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 960
NspI RCATGY 3 cut(s) 725, 779, 1193
PaeR7I CTCGAG 1 cut(s) 414
PciI ACATGT 2 cut(s) 775, 1189
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 6 cut(s) 312, 551, 881, 992, 1018, 1049
PkrI GCNGC 4 cut(s) 190, 387, 926, 973
PleI GAGTC 4 cut(s) 958, 1102, 1138, 1223
PpsI GAGTC 4 cut(s) 958, 1102, 1138, 1223
PpuMI RGGWCCY 1 cut(s) 1261
PscI ACATGT 2 cut(s) 775, 1189
Psp124BI GAGCTC 1 cut(s) 1242
Psp5II RGGWCCY 1 cut(s) 1261
Psp6I CCWGG 2 cut(s) 232, 964
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 232, 964
PspN4I GGNNCC 2 cut(s) 1263, 1307
PspPI GGNCC 5 cut(s) 112, 230, 1184, 1261, 1305
PspPPI RGGWCCY 1 cut(s) 1261
PspXI VCTCGAGB 1 cut(s) 414
RsaI GTAC 3 cut(s) 412, 594, 1315
RsaNI GTAC 3 cut(s) 411, 593, 1314
RseI CAYNNNNRTG 1 cut(s) 1074
SacI GAGCTC 1 cut(s) 1242
SaqAI TTAA 3 cut(s) 5, 396, 876
SatI GCNGC 4 cut(s) 189, 386, 925, 972
Sau3AI GATC 6 cut(s) 29, 538, 709, 761, 1066, 1291
Sau96I GGNCC 5 cut(s) 112, 230, 1184, 1261, 1305
SchI GAGTC 4 cut(s) 959, 1102, 1139, 1224
ScrFI CCNGG 2 cut(s) 234, 966
SduI GDGCHC 5 cut(s) 286, 526, 759, 1103, 1242
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 414
SinI GGWCC 4 cut(s) 112, 230, 1184, 1261
SlaI CTCGAG 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 4 cut(s) 414, 749, 782, 812
SmoI CTYRAG 4 cut(s) 414, 749, 782, 812
Sse9I AATT 5 cut(s) 19, 70, 360, 393, 1160
SsiI CCGC 2 cut(s) 924, 1325
SspMI CTAG 2 cut(s) 579, 1331
SstI GAGCTC 1 cut(s) 1242
StyD4I CCNGG 2 cut(s) 232, 964
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 7 cut(s) 116, 475, 548, 571, 634, 769, 980
TaiI ACGT 1 cut(s) 430
TaqI TCGA 4 cut(s) 415, 556, 1047, 1294
TasI AATT 5 cut(s) 19, 70, 360, 393, 1160
TatI WGTACW 1 cut(s) 592
TauI GCSGC 1 cut(s) 927
TfiI GAWTC 6 cut(s) 312, 551, 881, 992, 1018, 1049
Tru1I TTAA 3 cut(s) 5, 396, 876
Tru9I TTAA 3 cut(s) 5, 396, 876
TscAI CASTG 4 cut(s) 553, 663, 742, 1155
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 3 cut(s) 188, 385, 971
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 3 cut(s) 304, 668, 894
TspRI CASTG 4 cut(s) 553, 663, 742, 1155
VpaK11BI GGWCC 4 cut(s) 112, 230, 1184, 1261
XapI RAATTY 3 cut(s) 19, 70, 360
XceI RCATGY 3 cut(s) 725, 779, 1193
XhoI CTCGAG 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 579, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.