Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Forward (+)

14004009 .. 14010830

Gene Structure 6822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0156900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGGGAATAGCAACAGTACAACCACTCTCACCAATATTCTTCTCATCAAACTCATCAAAGGGTACTCACAATAATTCAATCTCGGAAAAGTACTCCAATTCAGGTAACTCTATGTCCCAAGACTACCATCAAAGCATCTACAGCTTCCCCAATGGCTTCGAAAGATCGGCGGTGACCACCCACCAAGAGCAGCAGCAGCAACACCACTTGGCACAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGGTTCGAGCCACCTCCTCCGCCATTGGTCGGGTTAGACGAGGAAGAATCCGGAGGCCTCAATCCGGTGTATGAAACAGCTGGGATGTTGTCGGAGATGTTTAATTATCCTGCAGGAGTCGCACCACCTGCAGAACTGCTTGAACATCCGATGACTGCCGGCTATCGGATGGCTCGGCCGCAGCAGCATCAATCTGCTGCGCCCGAGTGGTATGGAAGCAGACAAAACATGGTGGGCGGATTGGGTCCATTGGGGGATTCAAATAAGAATCAGAGTGGCCGCGACAACTTAGCAGCTCATCAGCATCAGATATCGACCATTAATGCGGATTCAGCTGCTGCCATGCAGCTTTTTCTAATGAATCCACAACCAAGATCGCCTTCTCCTCCAGCTCACTCAACTTCTTCTACTCTTCACATGTTGCTCCCTAATCCTTCATCCACTACTTTTCCTGGGGCAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGCTTTTGGTCAATTCTCATGGGTGAGTCAAGATACTCATGGCCATGAAGGCGGTTCCACAACTGGTCCTGCCCACCAACTCAACACCAGCAACATTAACCCTAGTGATCACCACCAGCAAGGTCTTTCATTATCTTTATCCACTTCATTGCAACACTTAGAGGCAGCCAAAGCCGAAGAACTACGAATGGGAGATGGTTCCGGATTGTTGTACTACAACAATCCGGAAGGGTCTTCTAGCAGTGCACATTACAACCAGTACAAGAATCTCGTTGGTCATCAAAGCCAGCAGGTTCATGTCGGGTTCGGGTCTTCATCTTTCGGGGTTGTGAATGTCTTGAGGAATTCAAAGTATGTCAAGGCCGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGTAGGGGTCAATTGAAGAAGAACAAATTGGGTCGACAGAATAGCTCATTAAACCCTAGCTCCAATCCAGCTGGCACCAGCGGCGGTGGTGCTGGCGGTGGCGCCTCTTCATCTTCATCAAAGGATGCGCCTCCTACTTTGTCAGCCGCTGATAGGATCGAACATCAGAGAAGGAAGGTCAAACTGTTGTCCATGCTTGATGAGGTGGATCGAAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAACGCATTTGATCTGGTGATGGGTTTCGGGGCCGCGGTGCCGTACACAGCCCTAGCTCAGAAGGCAATGTCACGGCATTTCCGGTGCCTGAAAGACGCGGTAACAGCGCAGTTGAAGCACAGCTGTGAATTGCTCGGAGAGAAAGATGGTGCGGGGAACTCAGGTATAACCAAAGGAGAGACGCCGAGGCTAAAGATGCTAGAGCAAAGCCTGAGACAGCAAAGAGCATTTCATCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCCTTCCCGAACGATCTGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGTCTCTCCAGAAACCAGGTCTCAAACTGGTTCATCAATGCTAGGGTTCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGGTGGTGGTGCAGTTGCAGCAGCAGCAGTATCAGTAGATCAAGATCAGAGATCAGAACAACGCAACAACCAAAACAACAACACTAGTGACCACCACGCACAGACTCCAACGCCTCCCACAACAACAACAACGACAACTGCCATGTCAGCCACAACGACAACAACAGCAGCTACAAGATCCGATATCAATGCCTCCGAAAGTGACCCTTCACTCCTCGCATTCAATAGGCAACGATCCTTCTCGGAAAACCAATCCACTACTCCTACTTACCCCATCAACATGTCCACCAGCACCACCGCCACAGCTCTGGTGGCGCCGCCTGTGCCCTACACCACCACCGCCGACGACACGTGTCGCCGCGGCAGCATGGACTACGGGACCACCTCGGGCAACGCATCATCATCAGCAGTTGCAGGAGATCATCAAAGTCTTCATCATCATGCAGGGTCTACGCTTATAACGTTCGGGACCACCACGGCGGGTGATGTGTCTCTCACTCTAGGGCTCCGCCATGCCGGAGGAGCAAACATTCCCGAGAAGAACACTTCTTCCTTCTCCATTAGAGACTTTGGGGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043021 GO:0043022 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

816

Amino Acids

87.74

Weight (kDa)

6.66

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	358 - 497	7.4e-47	Associated with HOX
Homeobox_KN	PF05920	567 - 606	5.9e-19	Homeobox KN domain
Homeodomain	PF00046	574 - 606	1.6e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2327
AarI	CACCTGC	1 cut(s)	382
AasI	GACNNNNNNGTC	1 cut(s)	1767
Acc36I	ACCTGC	2 cut(s)	382, 1018
AccB1I	GGYRCC	5 cut(s)	1208, 1235, 1423, 1470, 2182
AccI	GTMKAC	2 cut(s)	1168, 2318
AccII	CGCG	4 cut(s)	528, 1421, 1484, 2229
AccIII	TCCGGA	4 cut(s)	222, 296, 938, 961
AclI	AACGTT	1 cut(s)	2330
AclWI	GGATC	5 cut(s)	214, 1298, 1350, 2040, 2097
AcoI	YGGCCR	3 cut(s)	422, 523, 778
AcsI	RAATTY	1 cut(s)	1081
AcvI	CACGTG	1 cut(s)	2220
AcyI	GRCGYC	3 cut(s)	1236, 1568, 2183
AfaI	GTAC	8 cut(s)	18, 64, 92, 950, 998, 1430, 1727, 1847
AfiI	CCNNNNNNNGG	6 cut(s)	275, 310, 411, 704, 1287, 1661
AflIII	ACRYGT	4 cut(s)	663, 2148, 2217, 2219
AgsI	TTSAA	7 cut(s)	78, 389, 507, 1086, 1150, 1501, 2092
AhlI	ACTAGT	1 cut(s)	1952
AjnI	CCWGG	3 cut(s)	697, 1697, 1782
AjuI	GAANNNNNNNTTGG	6 cut(s)	610, 642, 1145, 1177, 1650, 1682
AleI	CACNNNNGTG	1 cut(s)	1509
AloI	GAACNNNNNNTCC	2 cut(s)	2402, 2434
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	7 cut(s)	1559, 1594, 1645, 1775, 1792, 2364, 2427
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	5 cut(s)	214, 1298, 1350, 2040, 2097
AlwNI	CAGNNNCTG	2 cut(s)	584, 1283
Ama87I	CYCGRG	3 cut(s)	449, 2254, 2402
Aor13HI	TCCGGA	4 cut(s)	222, 296, 938, 961
AoxI	GGCC	7 cut(s)	301, 422, 523, 778, 1098, 1416, 1663
ApaLI	GTGCAC	1 cut(s)	981
ApoI	RAATTY	1 cut(s)	1081
ArsI	GACNNNNNNTTYG	2 cut(s)	1665, 1697
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	5 cut(s)	448, 1238, 1264, 1495, 2185
AspS9I	GGNCC	5 cut(s)	491, 803, 1416, 2247, 2337
AsuHPI	GGTGA	6 cut(s)	21, 184, 772, 839, 1414, 2363
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	3 cut(s)	449, 2254, 2402
AvaII	GGWCC	4 cut(s)	491, 803, 2247, 2337
BaeGI	GKGCMC	2 cut(s)	985, 2196
BalI	TGGCCA	1 cut(s)	780
BanI	GGYRCC	5 cut(s)	1208, 1235, 1423, 1470, 2182
BanII	GRGCYC	1 cut(s)	2376
BbrPI	CACGTG	1 cut(s)	2220
BbsI	GAAGAC	3 cut(s)	963, 1041, 2291
Bbv12I	GWGCWC	1 cut(s)	985
BbvCI	CCTCAGC	1 cut(s)	236
BccI	CCATC	8 cut(s)	135, 409, 926, 1399, 1526, 1618, 1627, 2150
BceAI	ACGGC	3 cut(s)	1411, 1475, 2361
BcgI	CGANNNNNNTGC	2 cut(s)	2039, 2073
BciT130I	CCWGG	3 cut(s)	699, 1699, 1784
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	7 cut(s)	1559, 1594, 1645, 1775, 1792, 2364, 2427
BcuI	ACTAGT	1 cut(s)	1952
BfaI	CTAG	8 cut(s)	840, 975, 1191, 1439, 1586, 1809, 1953, 2369
BfmI	CTRYAG	3 cut(s)	139, 357, 375
BfoI	RGCGCY	2 cut(s)	1239, 2186
BfuAI	ACCTGC	2 cut(s)	382, 1018
BglI	GCCNNNNNGGC	1 cut(s)	786
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	699, 1699, 1784
Bme18I	GGWCC	4 cut(s)	491, 803, 2247, 2337
BmeT110I	CYCGRG	3 cut(s)	449, 2254, 2402
BmgT120I	GGNCC	5 cut(s)	491, 803, 1416, 2247, 2337
BmrFI	CCNGG	3 cut(s)	699, 1699, 1784
BmsI	GCATC	8 cut(s)	144, 442, 559, 1249, 1572, 1726, 1756, 2273
BoxI	GACNNNNGTC	1 cut(s)	2220
BpiI	GAAGAC	3 cut(s)	963, 1041, 2291
BpmI	CTGGAG	2 cut(s)	618, 1759
Bpu10I	CCTNAGC	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	1096, 1711
BsaAI	YACGTR	1 cut(s)	2220
BsaBI	GATNNNNATC	2 cut(s)	1746, 1911
BsaHI	GRCGYC	3 cut(s)	1236, 1568, 2183
BsaI	GGTCTC	3 cut(s)	1645, 1775, 1792
BsaJI	CCNNGG	7 cut(s)	698, 1419, 1571, 1830, 2227, 2253, 2343
BsaWI	WCCGGW	6 cut(s)	222, 296, 310, 938, 961, 1467
BsaXI	ACNNNNNCTCC	2 cut(s)	1178, 1208
Bsc4I	CCNNNNNNNGG	6 cut(s)	275, 310, 411, 704, 1287, 1661
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	4 cut(s)	805, 994, 1771, 1799
Bse3DI	GCAATG	2 cut(s)	884, 1458
Bse8I	GATNNNNATC	2 cut(s)	1746, 1911
BseAI	TCCGGA	4 cut(s)	222, 296, 938, 961
BseBI	CCWGG	3 cut(s)	699, 1699, 1784
BseDI	CCNNGG	7 cut(s)	698, 1419, 1571, 1830, 2227, 2253, 2343
BseGI	GGATG	5 cut(s)	336, 391, 420, 683, 1264
BseJI	GATNNNNATC	2 cut(s)	1746, 1911
BseLI	CCNNNNNNNGG	6 cut(s)	275, 310, 411, 704, 1287, 1661
BseMI	GCAATG	2 cut(s)	884, 1458
BseMII	CTCAG	4 cut(s)	227, 1457, 1560, 1589
BseNI	ACTGG	4 cut(s)	805, 994, 1771, 1799
BseSI	GKGCMC	2 cut(s)	985, 2196
BseX3I	CGGCCG	1 cut(s)	422
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	1899
Bsh1236I	CGCG	4 cut(s)	528, 1421, 1484, 2229
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	7 cut(s)	303, 424, 525, 780, 1100, 1418, 1665
BshNI	GGYRCC	5 cut(s)	1208, 1235, 1423, 1470, 2182
BsiEI	CGRYCG	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	985
BsiHKCI	CYCGRG	3 cut(s)	449, 2254, 2402
BsiSI	CCGG	8 cut(s)	223, 297, 311, 405, 939, 962, 1468, 2385
BslFI	GGGAC	3 cut(s)	100, 2260, 2350
BslI	CCNNNNNNNGG	6 cut(s)	275, 310, 411, 704, 1287, 1661
BsmAI	GTCTC	7 cut(s)	1559, 1594, 1645, 1775, 1792, 2364, 2427
BsmBI	CGTCTC	1 cut(s)	1559
BsmFI	GGGAC	3 cut(s)	100, 2260, 2350
BsmI	GAATGC	1 cut(s)	2087
BsnI	GGCC	7 cut(s)	303, 424, 525, 780, 1100, 1418, 1665
Bso31I	GGTCTC	3 cut(s)	1645, 1775, 1792
BsoBI	CYCGRG	3 cut(s)	449, 2254, 2402
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	985, 2196, 2376
Bsp13I	TCCGGA	4 cut(s)	222, 296, 938, 961
Bsp19I	CCATGG	1 cut(s)	1830
BspANI	GGCC	7 cut(s)	303, 424, 525, 780, 1100, 1418, 1665
BspCNI	CTCAG	4 cut(s)	228, 1456, 1559, 1590
BspEI	TCCGGA	4 cut(s)	222, 296, 938, 961
BspFNI	CGCG	4 cut(s)	528, 1421, 1484, 2229
BspMAI	CTGCAG	2 cut(s)	361, 379
BspMI	ACCTGC	2 cut(s)	382, 1018
BspPI	GGATC	5 cut(s)	214, 1298, 1350, 2040, 2097
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	5 cut(s)	1208, 1235, 1423, 1470, 2182
BspTNI	GGTCTC	3 cut(s)	1645, 1775, 1792
BsrDI	GCAATG	2 cut(s)	884, 1458
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	4 cut(s)	805, 994, 1771, 1799
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	7 cut(s)	698, 1419, 1571, 1830, 2227, 2253, 2343
BssNI	GRCGYC	3 cut(s)	1236, 1568, 2183
BssT1I	CCWWGG	1 cut(s)	1830
Bst2UI	CCWGG	3 cut(s)	699, 1699, 1784
Bst4CI	ACNGT	2 cut(s)	16, 1320
Bst6I	CTCTTC	4 cut(s)	663, 1113, 1246, 1833
BstACI	GRCGYC	3 cut(s)	1236, 1568, 2183
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	2220
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	5 cut(s)	406, 1025, 1207, 1228, 1367
BstDEI	CTNAG	6 cut(s)	236, 535, 895, 1443, 1546, 1598
BstDSI	CCRYGG	4 cut(s)	1419, 1830, 2227, 2343
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	5 cut(s)	336, 391, 420, 683, 1264
BstFNI	CGCG	4 cut(s)	528, 1421, 1484, 2229
BstH2I	RGCGCY	2 cut(s)	1239, 2186
BstHHI	GCGC	5 cut(s)	448, 1238, 1264, 1495, 2185
BstMAI	GTCTC	7 cut(s)	1559, 1594, 1645, 1775, 1792, 2364, 2427
BstMCI	CGRYCG	1 cut(s)	425
BstNI	CCWGG	3 cut(s)	699, 1699, 1784
BstNSI	RCATGY	2 cut(s)	667, 2152
BstPAI	GACNNNNGTC	1 cut(s)	2220
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	697, 1697, 1782
BstSFI	CTRYAG	3 cut(s)	139, 357, 375
BstSLI	GKGCMC	2 cut(s)	985, 2196
BstUI	CGCG	4 cut(s)	528, 1421, 1484, 2229
BstV2I	GAAGAC	3 cut(s)	963, 1041, 2291
BstX2I	RGATCY	2 cut(s)	219, 2045
BstXI	CCANNNNNNTGG	1 cut(s)	2176
BstYI	RGATCY	2 cut(s)	219, 2045
BstZI	CGGCCG	1 cut(s)	422
BsuRI	GGCC	7 cut(s)	303, 424, 525, 780, 1100, 1418, 1665
BtgI	CCRYGG	4 cut(s)	1419, 1830, 2227, 2343
BtgZI	GCGATG	1 cut(s)	1749
BtsCI	GGATG	5 cut(s)	336, 391, 420, 683, 1264
BtsI	GCAGTG	2 cut(s)	985, 1135
BtsIMutI	CAGTG	2 cut(s)	985, 1135
BveI	ACCTGC	2 cut(s)	382, 1018
Cac8I	GCNNGC	5 cut(s)	406, 1025, 1207, 1228, 1367
CaiI	CAGNNNCTG	2 cut(s)	584, 1283
CfoI	GCGC	5 cut(s)	448, 1238, 1264, 1495, 2185
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	5 cut(s)	491, 803, 1416, 2247, 2337
Cfr42I	CCGCGG	2 cut(s)	1422, 2230
CseI	GACGC	2 cut(s)	1490, 1576
CsiI	ACCWGGT	1 cut(s)	1782
Csp6I	GTAC	8 cut(s)	17, 63, 91, 949, 997, 1429, 1726, 1846
CviQI	GTAC	8 cut(s)	17, 63, 91, 949, 997, 1429, 1726, 1846
DdeI	CTNAG	6 cut(s)	236, 535, 895, 1443, 1546, 1598
DinI	GGCGCC	2 cut(s)	1237, 2184
DrdI	GACNNNNNNGTC	1 cut(s)	1767
DseDI	GACNNNNNNGTC	1 cut(s)	1767
EaeI	YGGCCR	3 cut(s)	422, 523, 778
EagI	CGGCCG	1 cut(s)	422
Eam1104I	CTCTTC	4 cut(s)	663, 1113, 1246, 1833
EarI	CTCTTC	4 cut(s)	663, 1113, 1246, 1833
EciI	GGCGGA	4 cut(s)	255, 498, 726, 2366
EclXI	CGGCCG	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	1830
Eco147I	AGGCCT	2 cut(s)	303, 1665
Eco24I	GRGCYC	1 cut(s)	2376
Eco31I	GGTCTC	3 cut(s)	1645, 1775, 1792
Eco32I	GATATC	2 cut(s)	558, 2053
Eco47I	GGWCC	4 cut(s)	491, 803, 2247, 2337
Eco52I	CGGCCG	1 cut(s)	422
Eco72I	CACGTG	1 cut(s)	2220
Eco88I	CYCGRG	3 cut(s)	449, 2254, 2402
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	1081
EcoRII	CCWGG	3 cut(s)	697, 1697, 1782
EcoRV	GATATC	2 cut(s)	558, 2053
EcoT14I	CCWWGG	1 cut(s)	1830
EcoT38I	GRGCYC	1 cut(s)	2376
EgeI	GGCGCC	2 cut(s)	1237, 2184
EheI	GGCGCC	2 cut(s)	1237, 2184
ErhI	CCWWGG	1 cut(s)	1830
Esp3I	CGTCTC	1 cut(s)	1559
FalI	AAGNNNNNCTT	4 cut(s)	610, 642, 2059, 2091
FaqI	GGGAC	3 cut(s)	100, 2260, 2350
FauI	CCCGC	2 cut(s)	1531, 2341
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	2 cut(s)	1168, 2318
FokI	GGATG	5 cut(s)	343, 378, 427, 670, 1271
FriOI	GRGCYC	1 cut(s)	2376
FspBI	CTAG	8 cut(s)	840, 975, 1191, 1439, 1586, 1809, 1953, 2369
GlaI	GCGC	5 cut(s)	447, 1237, 1263, 1494, 2184
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	2 cut(s)	618, 1759
HaeII	RGCGCY	2 cut(s)	1239, 2186
HaeIII	GGCC	7 cut(s)	303, 424, 525, 780, 1100, 1418, 1665
HapII	CCGG	8 cut(s)	223, 297, 311, 405, 939, 962, 1468, 2385
HgaI	GACGC	2 cut(s)	1490, 1576
HhaI	GCGC	5 cut(s)	448, 1238, 1264, 1495, 2185
Hin1I	GRCGYC	3 cut(s)	1236, 1568, 2183
Hin6I	GCGC	5 cut(s)	446, 1236, 1262, 1493, 2183
HinP1I	GCGC	5 cut(s)	446, 1236, 1262, 1493, 2183
HincII	GTYRAC	3 cut(s)	1169, 1387, 1684
HindII	GTYRAC	3 cut(s)	1169, 1387, 1684
HindIII	AAGCTT	1 cut(s)	1644
HinfI	GANTC	9 cut(s)	293, 363, 503, 514, 575, 607, 763, 1003, 1972
HpaI	GTTAAC	1 cut(s)	1387
HpaII	CCGG	8 cut(s)	223, 297, 311, 405, 939, 962, 1468, 2385
HphI	GGTGA	6 cut(s)	21, 184, 772, 839, 1414, 2363
Hpy166II	GTNNAC	7 cut(s)	983, 1169, 1387, 1431, 1684, 2154, 2319
Hpy8I	GTNNAC	7 cut(s)	983, 1169, 1387, 1431, 1684, 2154, 2319
Hpy99I	CGWCG	1 cut(s)	2216
HpyCH4III	ACNGT	2 cut(s)	16, 1320
HpyCH4IV	ACGT	2 cut(s)	2219, 2330
HpyF3I	CTNAG	6 cut(s)	236, 535, 895, 1443, 1546, 1598
HpySE526I	ACGT	2 cut(s)	2219, 2330
Hsp92I	GRCGYC	3 cut(s)	1236, 1568, 2183
HspAI	GCGC	5 cut(s)	446, 1236, 1262, 1493, 2183
KasI	GGCGCC	2 cut(s)	1235, 2182
Kpn2I	TCCGGA	4 cut(s)	222, 296, 938, 961
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	844
KspAI	GTTAAC	1 cut(s)	1387
KspI	CCGCGG	2 cut(s)	1422, 2230
LmnI	GCTCC	4 cut(s)	675, 1199, 2379, 2390
LweI	GCATC	8 cut(s)	144, 442, 559, 1249, 1572, 1726, 1756, 2273
MabI	ACCWGGT	1 cut(s)	1782
MaeI	CTAG	8 cut(s)	840, 975, 1191, 1439, 1586, 1809, 1953, 2369
MaeII	ACGT	2 cut(s)	2219, 2330
MaeIII	GTNAC	6 cut(s)	104, 172, 1455, 1486, 1955, 2069
MfeI	CAATTG	1 cut(s)	1145
MflI	RGATCY	2 cut(s)	219, 2045
MhlI	GDGCHC	3 cut(s)	985, 2196, 2376
MlsI	TGGCCA	1 cut(s)	780
MluCI	AATT	9 cut(s)	73, 97, 349, 749, 1081, 1109, 1145, 1160, 1514
MluNI	TGGCCA	1 cut(s)	780
Mly113I	GGCGCC	2 cut(s)	1236, 2183
MlyI	GAGTC	3 cut(s)	372, 772, 1966
MmeI	TCCRAC	3 cut(s)	318, 1095, 2000
Mox20I	TGGCCA	1 cut(s)	780
MroI	TCCGGA	4 cut(s)	222, 296, 938, 961
MroNI	GCCGGC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	6 cut(s)	348, 567, 834, 1184, 1386, 2449
MslI	CAYNNNNRTG	4 cut(s)	780, 1509, 2147, 2307
Msp20I	TGGCCA	1 cut(s)	780
MspA1I	CMGCKG	8 cut(s)	326, 581, 1205, 1215, 1283, 1421, 1509, 2229
MspI	CCGG	8 cut(s)	223, 297, 311, 405, 939, 962, 1468, 2385
MspR9I	CCNGG	3 cut(s)	699, 1699, 1784
MunI	CAATTG	1 cut(s)	1145
Mva1269I	GAATGC	1 cut(s)	2087
MvaI	CCWGG	3 cut(s)	699, 1699, 1784
MvnI	CGCG	4 cut(s)	528, 1421, 1484, 2229
NaeI	GCCGGC	1 cut(s)	406
NarI	GGCGCC	2 cut(s)	1236, 2183
NcoI	CCATGG	1 cut(s)	1830
NgoMIV	GCCGGC	1 cut(s)	404
NmeAIII	GCCGAG	2 cut(s)	400, 1596
NmuCI	GTSAC	4 cut(s)	172, 1455, 1955, 2069
NspI	RCATGY	2 cut(s)	667, 2152
NspV	TTCGAA	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	1509
PaqCI	CACCTGC	1 cut(s)	382
PceI	AGGCCT	2 cut(s)	303, 1665
PciI	ACATGT	2 cut(s)	663, 2148
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 2327
PctI	GAATGC	1 cut(s)	2087
PdiI	GCCGGC	1 cut(s)	406
PfeI	GAWTC	6 cut(s)	293, 503, 514, 575, 607, 1003
PleI	GAGTC	3 cut(s)	371, 771, 1966
PluTI	GGCGCC	2 cut(s)	1239, 2186
PmaCI	CACGTG	1 cut(s)	2220
PmlI	CACGTG	1 cut(s)	2220
PpsI	GAGTC	3 cut(s)	371, 771, 1966
Ppu21I	YACGTR	1 cut(s)	2220
PscI	ACATGT	2 cut(s)	663, 2148
PshAI	GACNNNNGTC	1 cut(s)	2220
PshBI	ATTAAT	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	2327
Psp1406I	AACGTT	1 cut(s)	2330
Psp6I	CCWGG	3 cut(s)	697, 1697, 1782
PspCI	CACGTG	1 cut(s)	2220
PspEI	GGTNACC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	3 cut(s)	697, 1697, 1782
PspPI	GGNCC	5 cut(s)	491, 803, 1416, 2247, 2337
PstI	CTGCAG	2 cut(s)	361, 379
PstNI	CAGNNNCTG	2 cut(s)	584, 1283
PsuI	RGATCY	2 cut(s)	219, 2045
PvuII	CAGCTG	4 cut(s)	326, 581, 1205, 1509
RsaI	GTAC	8 cut(s)	18, 64, 92, 950, 998, 1430, 1727, 1847
RsaNI	GTAC	8 cut(s)	17, 63, 91, 949, 997, 1429, 1726, 1846
RseI	CAYNNNNRTG	4 cut(s)	780, 1509, 2147, 2307
SacII	CCGCGG	2 cut(s)	1422, 2230
SalI	GTCGAC	1 cut(s)	1167
SaqAI	TTAA	6 cut(s)	348, 567, 834, 1184, 1386, 2449
Sau96I	GGNCC	5 cut(s)	491, 803, 1416, 2247, 2337
SbfI	CCTGCAGG	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	3 cut(s)	372, 772, 1966
ScrFI	CCNGG	3 cut(s)	699, 1699, 1784
SdaI	CCTGCAGG	1 cut(s)	361
SduI	GDGCHC	3 cut(s)	985, 2196, 2376
SexAI	ACCWGGT	1 cut(s)	1782
SfaNI	GCATC	8 cut(s)	144, 442, 559, 1249, 1572, 1726, 1756, 2273
SfcI	CTRYAG	3 cut(s)	139, 357, 375
SfoI	GGCGCC	2 cut(s)	1237, 2184
Sfr303I	CCGCGG	2 cut(s)	1422, 2230
SfuI	TTCGAA	1 cut(s)	159
SgrBI	CCGCGG	2 cut(s)	1422, 2230
SinI	GGWCC	4 cut(s)	491, 803, 2247, 2337
SmiMI	CAYNNNNRTG	4 cut(s)	780, 1509, 2147, 2307
SmlI	CTYRAG	2 cut(s)	1075, 1690
SmoI	CTYRAG	2 cut(s)	1075, 1690
SpeI	ACTAGT	1 cut(s)	1952
Sse8387I	CCTGCAGG	1 cut(s)	361
Sse9I	AATT	9 cut(s)	73, 97, 349, 749, 1081, 1109, 1145, 1160, 1514
SseBI	AGGCCT	2 cut(s)	303, 1665
SspDI	GGCGCC	2 cut(s)	1235, 2182
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	8 cut(s)	840, 975, 1191, 1439, 1586, 1809, 1953, 2369
StuI	AGGCCT	2 cut(s)	303, 1665
StyD4I	CCNGG	3 cut(s)	697, 1697, 1782
StyI	CCWWGG	1 cut(s)	1830
TaaI	ACNGT	2 cut(s)	16, 1320
TaiI	ACGT	2 cut(s)	2222, 2333
TaqI	TCGA	7 cut(s)	159, 252, 560, 1168, 1293, 1345, 1816
TasI	AATT	9 cut(s)	73, 97, 349, 749, 1081, 1109, 1145, 1160, 1514
TatI	WGTACW	4 cut(s)	16, 90, 948, 996
TauI	GCSGC	9 cut(s)	427, 528, 1103, 1218, 1283, 1421, 2188, 2229, 2232
TfiI	GAWTC	6 cut(s)	293, 503, 514, 575, 607, 1003
Tru1I	TTAA	6 cut(s)	348, 567, 834, 1184, 1386, 2449
Tru9I	TTAA	6 cut(s)	348, 567, 834, 1184, 1386, 2449
TscAI	CASTG	2 cut(s)	985, 1135
TseFI	GTSAC	4 cut(s)	172, 1455, 1955, 2069
Tsp45I	GTSAC	4 cut(s)	172, 1455, 1955, 2069
TspRI	CASTG	2 cut(s)	985, 1135
VneI	GTGCAC	1 cut(s)	981
VpaK11BI	GGWCC	4 cut(s)	491, 803, 2247, 2337
VspI	ATTAAT	1 cut(s)	567
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	1 cut(s)	1081
XceI	RCATGY	2 cut(s)	667, 2152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2176
XmiI	GTMKAC	2 cut(s)	1168, 2318
XspI	CTAG	8 cut(s)	840, 975, 1191, 1439, 1586, 1809, 1953, 2369
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.