FvH4_6g15430

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001788
Physical Location & Seq
Forward (+)
9593059 .. 9594727
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15430.t1

Sequence Viewer

Length: 930 bp
ATGAACTATAATCCTCAACAAGACTTTGTTTCAAGAACCATCACAGTTGATAAGCATGGCCGAGGTGATTTTGCCTCTGTGCAACAAGCCATTGATTCTATACCATCAAATAATTATGTGTGGACTCGTATCCACATCAACTTTGGCATCTACGTGGAAAAAGTTGAAATCCCTCAAGACAAACCATATATTATTCTTGAAGGAGACCCAAATCACTTCCCTGTGATTGAATATGGATCGGATGCTGGAGATGTTGTTAAGAGTCCCGCATTTAAGTTATATGCAGATAACTTTGTGGCACGCAATATAGTATTCAAGAACACATATAACCGTCTTCTTCCACCAAAGGACGGCCGTGGACGGAAAATGGCTCAAGCACCGGCAGCTGCAATATATGGAGATAAAGCAAGCTTTTATCAATGTCGTTTCCTTAGCGTGCAAGATACATTGGCAGATATCCAAGGTCGTCACTATTTTTATGACTGTTATATTGAAGGCCGTGTAGACTTTATTTGGGGCTTCGGTCAGTCCATCTATGAGAAATGTCAGATAAATTCACTAGGTTCGGGCTATATCACAGCGCAGGGTCGTGATAGCGCATACAACGCTACTGGTTTCGTGTTCAAAGATTGTTATGTATACGGATCAGGTCCTACATTGCTGGGAAGAGCATACAGGCCTTACGCTAGAGTGTTGTTTGTTGGAACTTATATGGAAGATATCATTAAGGCAGAGGGTTGGATCGCACCATGGAATAATGGTCAAGATTACTTGACTGCGTTCTCGGAGGTGGATTGCAAAGGACCTGGGGCAGAGTTGTCCAAACGTGTACCATGGGAGAAGAAGCTATCAGCTGAGGAAGTGTCTTATTTCAGTAATGCAGCTTCTTTCATAAACCAAGATGGATGGATGCAAAAACAACCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

310

Amino Acids

35.01

Weight (kDa)

6.44

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 14 - 299 6.7e-50 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 504, 639
AciI CCGC 1 cut(s) 267
AclWI GGATC 3 cut(s) 244, 652, 749
AcoI YGGCCR 2 cut(s) 58, 352
AcsI RAATTY 1 cut(s) 553
AfaI GTAC 1 cut(s) 831
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 826
AgsI TTSAA 7 cut(s) 33, 167, 200, 230, 316, 494, 625
AjnI CCWGG 1 cut(s) 805
AluBI AGCT 5 cut(s) 386, 411, 847, 854, 884
AluI AGCT 5 cut(s) 386, 411, 847, 854, 884
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 3 cut(s) 244, 652, 749
AoxI GGCC 4 cut(s) 58, 352, 496, 677
ApeKI GCWGC 3 cut(s) 383, 386, 881
ApoI RAATTY 1 cut(s) 553
AspLEI GCGC 2 cut(s) 583, 599
AspS9I GGNCC 2 cut(s) 650, 803
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 2 cut(s) 650, 803
BarI GAAGNNNNNNTAC 2 cut(s) 868, 900
BbsI GAAGAC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 3 cut(s) 373, 395, 893
BccI CCATC 5 cut(s) 47, 112, 539, 896, 900
BceAI ACGGC 3 cut(s) 339, 367, 483
BciT130I CCWGG 1 cut(s) 807
BciVI GTATCC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 560, 687
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 3 cut(s) 384, 387, 882
BlsI GCNGC 3 cut(s) 385, 388, 883
Bme1390I CCNGG 1 cut(s) 807
Bme18I GGWCC 2 cut(s) 650, 803
BmgT120I GGNCC 2 cut(s) 650, 803
BmrFI CCNGG 1 cut(s) 807
BmsI GCATC 3 cut(s) 156, 232, 900
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 2 cut(s) 431, 855
BpuEI CTTGAG 2 cut(s) 159, 357
BsaAI YACGTR 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 6 cut(s) 61, 355, 460, 749, 806, 833
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 6 cut(s) 61, 355, 460, 749, 806, 833
BseGI GGATG 3 cut(s) 247, 911, 915
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 1 cut(s) 846
BseNI ACTGG 1 cut(s) 616
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 3 cut(s) 373, 395, 893
BseYI CCCAGC 1 cut(s) 661
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 4 cut(s) 60, 354, 498, 679
BsiEI CGRYCG 1 cut(s) 355
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 4 cut(s) 60, 354, 498, 679
Bso31I GGTCTC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 236, 644, 741
Bsp19I CCATGG 2 cut(s) 749, 833
BspACI CCGC 1 cut(s) 267
BspANI GGCC 4 cut(s) 60, 354, 498, 679
BspCNI CTCAG 1 cut(s) 847
BspPI GGATC 3 cut(s) 244, 652, 749
BspQI GCTCTTC 1 cut(s) 661
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 656
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 6 cut(s) 61, 355, 460, 749, 806, 833
BssMI GATC 3 cut(s) 236, 644, 741
BssNAI GTATAC 1 cut(s) 640
BssT1I CCWWGG 3 cut(s) 460, 749, 833
Bst1107I GTATAC 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 3 cut(s) 46, 332, 485
Bst6I CTCTTC 1 cut(s) 661
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 301, 409, 437
BstDEI CTNAG 2 cut(s) 431, 855
BstDSI CCRYGG 3 cut(s) 355, 749, 833
BstF5I GGATG 3 cut(s) 247, 911, 915
BstHHI GCGC 2 cut(s) 583, 599
BstKTI GATC 3 cut(s) 239, 647, 744
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 236, 644, 741
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 383, 605
BstNI CCWGG 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 805
BstV1I GCAGC 3 cut(s) 373, 395, 893
BstV2I GAAGAC 1 cut(s) 326
BstZ17I GTATAC 1 cut(s) 640
BstZI CGGCCG 1 cut(s) 352
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 4 cut(s) 60, 354, 498, 679
BtgI CCRYGG 3 cut(s) 355, 749, 833
BtsCI GGATG 3 cut(s) 247, 911, 915
Cac8I GCNNGC 3 cut(s) 301, 409, 437
CfoI GCGC 2 cut(s) 583, 599
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 650, 803
Csp6I GTAC 1 cut(s) 830
CviAII CATG 3 cut(s) 56, 750, 834
CviQI GTAC 1 cut(s) 830
DdeI CTNAG 2 cut(s) 431, 855
DpnI GATC 3 cut(s) 238, 646, 743
DpnII GATC 3 cut(s) 236, 644, 741
EaeI YGGCCR 2 cut(s) 58, 352
EagI CGGCCG 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 661
EarI CTCTTC 1 cut(s) 661
EclXI CGGCCG 1 cut(s) 352
Eco130I CCWWGG 3 cut(s) 460, 749, 833
Eco147I AGGCCT 1 cut(s) 679
Eco31I GGTCTC 1 cut(s) 198
Eco32I GATATC 2 cut(s) 457, 721
Eco47I GGWCC 2 cut(s) 650, 803
Eco52I CGGCCG 1 cut(s) 352
EcoO109I RGGNCCY 2 cut(s) 650, 803
EcoRII CCWGG 1 cut(s) 805
EcoRV GATATC 2 cut(s) 457, 721
EcoT14I CCWWGG 3 cut(s) 460, 749, 833
ErhI CCWWGG 3 cut(s) 460, 749, 833
FaeI CATG 3 cut(s) 59, 753, 837
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 55, 749, 833
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 2 cut(s) 504, 639
Fnu4HI GCNGC 3 cut(s) 384, 387, 882
FokI GGATG 3 cut(s) 254, 918, 922
Fsp4HI GCNGC 3 cut(s) 384, 387, 882
FspBI CTAG 2 cut(s) 560, 687
GlaI GCGC 2 cut(s) 582, 598
GluI GCNGC 3 cut(s) 384, 387, 882
GsaI CCCAGC 1 cut(s) 665
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 4 cut(s) 60, 354, 498, 679
HapII CCGG 1 cut(s) 380
HhaI GCGC 2 cut(s) 583, 599
Hin1II CATG 3 cut(s) 59, 753, 837
Hin6I GCGC 2 cut(s) 581, 597
HinP1I GCGC 2 cut(s) 581, 597
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 3 cut(s) 95, 124, 262
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 5 cut(s) 123, 359, 505, 640, 830
Hpy188I TCNGA 3 cut(s) 241, 549, 787
Hpy188III TCNNGA 6 cut(s) 33, 176, 197, 316, 590, 764
Hpy8I GTNNAC 5 cut(s) 123, 359, 505, 640, 830
HpyAV CCTTC 2 cut(s) 194, 488
HpyCH4III ACNGT 3 cut(s) 46, 332, 485
HpyCH4IV ACGT 2 cut(s) 153, 826
HpyCH4V TGCA 7 cut(s) 82, 284, 389, 439, 798, 881, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 605
HpyF3I CTNAG 2 cut(s) 431, 855
HpySE526I ACGT 2 cut(s) 153, 826
Hsp92II CATG 3 cut(s) 59, 753, 837
HspAI GCGC 2 cut(s) 581, 597
Kzo9I GATC 3 cut(s) 236, 644, 741
LguI GCTCTTC 1 cut(s) 661
Lsp1109I GCAGC 3 cut(s) 373, 395, 893
LweI GCATC 3 cut(s) 156, 232, 900
MaeI CTAG 2 cut(s) 560, 687
MaeII ACGT 2 cut(s) 153, 826
MaeIII GTNAC 1 cut(s) 467
MalI GATC 3 cut(s) 238, 646, 743
MboI GATC 3 cut(s) 236, 644, 741
MboII GAAGA 5 cut(s) 326, 329, 678, 728, 853
MluCI AATT 2 cut(s) 112, 553
MlyI GAGTC 2 cut(s) 118, 271
MmeI TCCRAC 2 cut(s) 682, 719
MnlI CCTC 7 cut(s) 24, 56, 85, 183, 727, 781, 850
MseI TTAA 3 cut(s) 258, 273, 726
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 386, 854
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 807
MwoI GCNNNNNNNGC 2 cut(s) 383, 605
NcoI CCATGG 2 cut(s) 749, 833
NdeII GATC 3 cut(s) 236, 644, 741
NlaIII CATG 3 cut(s) 59, 753, 837
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 467
PceI AGGCCT 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 385, 388, 883
PleI GAGTC 2 cut(s) 118, 270
PpsI GAGTC 2 cut(s) 118, 270
Ppu21I YACGTR 1 cut(s) 154
PpuMI RGGWCCY 2 cut(s) 650, 803
Psp5II RGGWCCY 2 cut(s) 650, 803
Psp6I CCWGG 1 cut(s) 805
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 1 cut(s) 805
PspPI GGNCC 2 cut(s) 650, 803
PspPPI RGGWCCY 2 cut(s) 650, 803
PvuII CAGCTG 2 cut(s) 386, 854
RsaI GTAC 1 cut(s) 831
RsaNI GTAC 1 cut(s) 830
RseI CAYNNNNRTG 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 661
SaqAI TTAA 3 cut(s) 258, 273, 726
SatI GCNGC 3 cut(s) 384, 387, 882
Sau3AI GATC 3 cut(s) 236, 644, 741
Sau96I GGNCC 2 cut(s) 650, 803
SchI GAGTC 2 cut(s) 118, 271
ScrFI CCNGG 1 cut(s) 807
SfaNI GCATC 3 cut(s) 156, 232, 900
SinI GGWCC 2 cut(s) 650, 803
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 174, 372
SmoI CTYRAG 2 cut(s) 174, 372
Sse9I AATT 2 cut(s) 112, 553
SseBI AGGCCT 1 cut(s) 679
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 560, 687
StuI AGGCCT 1 cut(s) 679
StyD4I CCNGG 1 cut(s) 805
StyI CCWWGG 3 cut(s) 460, 749, 833
TaaI ACNGT 3 cut(s) 46, 332, 485
TaiI ACGT 2 cut(s) 156, 829
TaqII GACCGA 1 cut(s) 512
TasI AATT 2 cut(s) 112, 553
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 258, 273, 726
Tru9I TTAA 3 cut(s) 258, 273, 726
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 3 cut(s) 383, 386, 881
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 2 cut(s) 17, 880
TspGWI ACGGA 2 cut(s) 376, 657
VpaK11BI GGWCC 2 cut(s) 650, 803
XapI RAATTY 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 2 cut(s) 504, 639
XspI CTAG 2 cut(s) 560, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.