Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Forward (+)

22304756 .. 22306608

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCAACAATACTTGCTCTTCTCCTAGTTTTCTTGAGTGCTTTGAATGCACAACCCGACATTTCAAGAACCATCCTAGTTGATAAGAGAGGTGGAGGGAATTTTACAACACTGAAACAAGCCATCGACTCTATCCCATCAAACAACTTATTGTGGACCCGCATAACCACGGTTGAAAAAATTGTGATCCCTAAAGACAAACCCTACATAATTCTTCAAGGAGACCTTAAATATCCTAGCGTGGTTGAATATGGAGATGGTGGCAACGTTGTGGAAAGTCCTACATTCAAATTGGAAGCAGATAATTTTGTGGCTCGGAATATAGTTTTCAAGAATACATATAACCGTCCCAATAATGGAAAGAAAATTATTCAGGCACCTGCGGCTTCGCTTACGGGCGACAAAGCAAGCTTTTATCATTGTAAGTTCATTAGTGTGCAAGACACATTGCATGATGGTCTTGGTCGTCACTATTTCAATGACTGCTTTGTCGAAGGTGCCATAGACTTTATTTGGGGCAACGGCCAGTCTATTTACGAGAAATGCAAGATAATATCTGTAACAGACAGAATAGGCCGAGCTGGTTTTATCACAGCGCAGGGTAGAAGTGCCGCAAATGAACCTACTGGTTATGTATTCAACGATTGCCATGTAAATGGAACAGGCCCTATATTTTTAGGAAGACCATACAGAAATTACTCAAGAGTGGTGTTTGCCTCCACGTACATGGAAAATATTATTACCCCGGAGGGTTGGTCCGAGTGGCTAACTGGTCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

261

Amino Acids

28.84

Weight (kDa)

8.26

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	2 cut(s)	376, 497
AciI	CCGC	3 cut(s)	160, 383, 612
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	9 cut(s)	46, 66, 176, 218, 248, 289, 331, 478, 640
AluBI	AGCT	2 cut(s)	411, 581
AluI	AGCT	2 cut(s)	411, 581
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	3 cut(s)	523, 574, 664
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	4 cut(s)	156, 665, 756, 773
AsuC2I	CCSGG	1 cut(s)	746
AvaII	GGWCC	3 cut(s)	156, 756, 773
BanI	GGYRCC	2 cut(s)	376, 497
BbsI	GAAGAC	1 cut(s)	688
BccI	CCATC	5 cut(s)	80, 131, 145, 251, 449
BceAI	ACGGC	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	3 cut(s)	26, 77, 237
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	384, 612
BlsI	GCNGC	2 cut(s)	385, 613
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	3 cut(s)	156, 756, 773
BmgT120I	GGNCC	4 cut(s)	156, 665, 756, 773
BmiI	GGNNCC	3 cut(s)	158, 378, 499
BmrFI	CCNGG	1 cut(s)	746
BpiI	GAAGAC	1 cut(s)	688
BpuEI	CTTGAG	2 cut(s)	55, 685
BpuMI	CCSGG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	723
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	168, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	526, 631, 775
Bse3DI	GCAATG	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	168, 744
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	446
BseNI	ACTGG	3 cut(s)	526, 631, 775
BshFI	GGCC	3 cut(s)	525, 576, 666
BshNI	GGYRCC	2 cut(s)	376, 497
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	525, 576, 666
Bso31I	GGTCTC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	160, 383, 612
BspANI	GGCC	3 cut(s)	525, 576, 666
BspLI	GGNNCC	3 cut(s)	158, 378, 499
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	24
BspT107I	GGYRCC	2 cut(s)	376, 497
BspTNI	GGTCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	526, 631, 775
BssECI	CCNNGG	2 cut(s)	168, 744
BssMI	GATC	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	172, 347
Bst6I	CTCTTC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 383
BstSCI	CCNGG	1 cut(s)	744
BstV2I	GAAGAC	1 cut(s)	688
BstXI	CCANNNNNNTGG	2 cut(s)	656, 727
BsuRI	GGCC	3 cut(s)	525, 576, 666
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	4 cut(s)	156, 665, 756, 773
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	3 cut(s)	452, 650, 727
CviJI	RGCY	9 cut(s)	122, 314, 386, 411, 525, 576, 581, 666, 766
CviKI_1	RGCY	9 cut(s)	122, 314, 386, 411, 525, 576, 581, 666, 766
CviQI	GTAC	1 cut(s)	724
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	3 cut(s)	156, 756, 773
EcoO109I	RGGNCCY	1 cut(s)	665
FaeI	CATG	3 cut(s)	455, 653, 730
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	3 cut(s)	451, 649, 726
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	384, 612
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	384, 612
FspBI	CTAG	3 cut(s)	26, 77, 237
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	2 cut(s)	384, 612
HaeIII	GGCC	3 cut(s)	525, 576, 666
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	3 cut(s)	455, 653, 730
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	746
Hpy166II	GTNNAC	2 cut(s)	6, 156
Hpy188I	TCNGA	2 cut(s)	318, 760
Hpy188III	TCNNGA	4 cut(s)	34, 66, 331, 702
Hpy8I	GTNNAC	2 cut(s)	6, 156
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	2 cut(s)	172, 347
HpyCH4IV	ACGT	2 cut(s)	267, 722
HpyCH4V	TGCA	4 cut(s)	50, 439, 451, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 383
HpySE526I	ACGT	2 cut(s)	267, 722
Hsp92II	CATG	3 cut(s)	455, 653, 730
HspAI	GCGC	1 cut(s)	596
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	24
LpnPI	CCDG	9 cut(s)	359, 393, 539, 567, 584, 612, 648, 756, 759
MaeI	CTAG	3 cut(s)	26, 77, 237
MaeII	ACGT	2 cut(s)	267, 722
MaeIII	GTNAC	2 cut(s)	467, 559
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	11, 206, 693
MluCI	AATT	7 cut(s)	100, 180, 210, 290, 304, 366, 694
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	83, 89, 727, 742
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	3 cut(s)	434, 654, 725
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	47, 383
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	3 cut(s)	455, 653, 730
NlaIV	GGNNCC	3 cut(s)	158, 378, 499
NmeAIII	GCCGAG	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	24
PctI	GAATGC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	385, 613
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	723
Psp1406I	AACGTT	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	158, 378, 499
PspPI	GGNCC	4 cut(s)	156, 665, 756, 773
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	3 cut(s)	434, 654, 725
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	384, 612
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	4 cut(s)	156, 665, 756, 773
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	746
SetI	ASST	9 cut(s)	94, 228, 270, 382, 413, 499, 583, 625, 725
SinI	GGWCC	3 cut(s)	156, 756, 773
SmiMI	CAYNNNNRTG	3 cut(s)	434, 654, 725
SmlI	CTYRAG	2 cut(s)	34, 700
SmoI	CTYRAG	2 cut(s)	34, 700
Sse9I	AATT	7 cut(s)	100, 180, 210, 290, 304, 366, 694
SsiI	CCGC	3 cut(s)	160, 383, 612
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	3 cut(s)	26, 77, 237
StyD4I	CCNGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	172, 347
TaiI	ACGT	2 cut(s)	270, 725
TaqI	TCGA	2 cut(s)	126, 492
TasI	AATT	7 cut(s)	100, 180, 210, 290, 304, 366, 694
TauI	GCSGC	2 cut(s)	386, 614
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	418, 633
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	3 cut(s)	156, 756, 773
XapI	RAATTY	1 cut(s)	100
XspI	CTAG	3 cut(s)	26, 77, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.