Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Forward (+)

43288005 .. 43289344

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCGAGGTGATTTTGCCTCGGTGCAACAAGCCATTGATTCTATACCATCAAACAATTATGTGTGGACTTGTATCCACATCAACTTCGGCGTCTACGTCTAAGGAACAAGTTGAGATCCCTCGAGACAAACCATATATAATTCTTGAAGGAGACCCTGGCCACTTCCCTGTGATTGAATATGGATCAGATGCTGGAGATGTTGTTAAGAGTCCTACATCTAAGTTACATGCAGATAATTTTGTGGCACGAAATATAGTATTCAAGAACACATATAATCGTCTTCCTCCACCAAAGTACGGTGGCAATGGAAGGAAAGTAGCCCAAGCACCCGCAGCTGCAATATATGGAGATAAAGCAAGTTTGTATCGGTGTAGTTTCCATAGCGTGCAAGATACACTGGCCGATATTCTAGGTCGTCACTATTTTTGTGATTGCTATATTGAAGGTCGTGTAGATTTTATTTGGGGCTTCGGTCAGTCCATTTATGAGAAATGTCAAATAAATTCGCTTGGTTCCGGCTATATCACAACGCAGGGTCATTGTCATGTATCCGGATCAGGTCCTACACTGCTGGGAAGAGCATACAGGCCATACGCTAGAGTGTTGTTTGTTGGAACATGTATGGAAGATATCATTAAGCCAGAAGGTTGGGAGTTGGGACGCACCATGGAACAATGTGAATTGACTGCGTTCTCGGAGGTGGATTGTAAAGGGCCTGGGGCAGACTTGTCCGATCGTGTACCATGGGAGAAGAAGCAGCTATCAGCTGAGGAACTGTCTTATTTCAGTAATACAGCTTCTTTCATAAACCAAGATGGATGGTTGGAAAAACAACCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

282

Amino Acids

31.2

Weight (kDa)

6.18

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	33 - 170	2.7e-18	Pectinesterase
Pectinesterase	PF01095	183 - 271	3.2e-11	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	554
AciI	CCGC	1 cut(s)	333
AclWI	GGATC	3 cut(s)	112, 193, 565
AcoI	YGGCCR	3 cut(s)	3, 160, 402
AcsI	RAATTY	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	299, 744
AfiI	CCNNNNNNNGG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	149, 179, 265, 446
AjnI	CCWGG	2 cut(s)	157, 718
AluBI	AGCT	4 cut(s)	338, 763, 770, 800
AluI	AGCT	4 cut(s)	338, 763, 770, 800
Alw26I	GTCTC	2 cut(s)	120, 147
AlwI	GGATC	3 cut(s)	112, 193, 565
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	554
AoxI	GGCC	5 cut(s)	3, 160, 402, 590, 716
ApeKI	GCWGC	3 cut(s)	335, 338, 760
ApoI	RAATTY	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	563, 716
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	784, 816
BbsI	GAAGAC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	325, 347, 772
BccI	CCATC	3 cut(s)	57, 812, 816
BciT130I	CCWGG	2 cut(s)	159, 720
BciVI	GTATCC	2 cut(s)	85, 562
BcoDI	GTCTC	2 cut(s)	120, 147
BfaI	CTAG	2 cut(s)	413, 600
BfuI	GTATCC	2 cut(s)	85, 562
BisI	GCNGC	3 cut(s)	336, 339, 761
BlsI	GCNGC	3 cut(s)	337, 340, 762
Bme1390I	CCNGG	2 cut(s)	159, 720
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	563, 716
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	159, 720
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	6 cut(s)	6, 20, 157, 669, 719, 746
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	313
BseAI	TCCGGA	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	159, 720
BseDI	CCNNGG	6 cut(s)	6, 20, 157, 669, 719, 746
BseGI	GGATG	1 cut(s)	827
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	325, 347, 772
BseYI	CCCAGC	1 cut(s)	574
Bsh1285I	CGRYCG	1 cut(s)	739
BshFI	GGCC	5 cut(s)	5, 162, 404, 592, 718
BsiEI	CGRYCG	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	519, 555
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	120, 147
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	5 cut(s)	5, 162, 404, 592, 718
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	554
Bsp143I	GATC	4 cut(s)	117, 185, 557, 736
Bsp19I	CCATGG	2 cut(s)	669, 746
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	5 cut(s)	5, 162, 404, 592, 718
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	3 cut(s)	112, 193, 565
BspQI	GCTCTTC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	6 cut(s)	6, 20, 157, 669, 719, 746
BssMI	GATC	4 cut(s)	117, 185, 557, 736
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	669, 746
Bst2UI	CCWGG	2 cut(s)	159, 720
Bst4CI	ACNGT	2 cut(s)	302, 780
Bst6I	CTCTTC	1 cut(s)	574
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	102, 222, 771
BstDSI	CCRYGG	2 cut(s)	669, 746
BstF5I	GGATG	1 cut(s)	827
BstKTI	GATC	4 cut(s)	120, 188, 560, 739
BstMAI	GTCTC	2 cut(s)	120, 147
BstMBI	GATC	4 cut(s)	117, 185, 557, 736
BstMCI	CGRYCG	1 cut(s)	739
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	159, 720
BstNSI	RCATGY	2 cut(s)	233, 624
BstSCI	CCNGG	2 cut(s)	157, 718
BstV1I	GCAGC	3 cut(s)	325, 347, 772
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	2 cut(s)	85, 562
BsuRI	GGCC	5 cut(s)	5, 162, 404, 592, 718
BtgI	CCRYGG	2 cut(s)	669, 746
BtsCI	GGATG	1 cut(s)	827
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	398, 569
Cac8I	GCNNGC	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	563, 716
CseI	GACGC	2 cut(s)	81, 672
Csp6I	GTAC	2 cut(s)	298, 743
CviAII	CATG	5 cut(s)	230, 548, 621, 670, 747
CviQI	GTAC	2 cut(s)	298, 743
DdeI	CTNAG	3 cut(s)	102, 222, 771
DpnI	GATC	4 cut(s)	119, 187, 559, 738
DpnII	GATC	4 cut(s)	117, 185, 557, 736
EaeI	YGGCCR	3 cut(s)	3, 160, 402
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	669, 746
Eco31I	GGTCTC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	123
EcoO109I	RGGNCCY	2 cut(s)	563, 716
EcoRII	CCWGG	2 cut(s)	157, 718
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	669, 746
ErhI	CCWWGG	2 cut(s)	669, 746
FaeI	CATG	5 cut(s)	233, 551, 624, 673, 750
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	5 cut(s)	229, 547, 620, 669, 746
FauI	CCCGC	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	336, 339, 761
FokI	GGATG	1 cut(s)	834
Fsp4HI	GCNGC	3 cut(s)	336, 339, 761
FspBI	CTAG	2 cut(s)	413, 600
GluI	GCNGC	3 cut(s)	336, 339, 761
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	5 cut(s)	5, 162, 404, 592, 718
HapII	CCGG	2 cut(s)	519, 555
HgaI	GACGC	2 cut(s)	81, 672
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	5 cut(s)	233, 551, 624, 673, 750
HinfI	GANTC	2 cut(s)	40, 211
HpaII	CCGG	2 cut(s)	519, 555
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	68, 96, 743
Hpy188I	TCNGA	3 cut(s)	190, 700, 736
Hpy188III	TCNNGA	4 cut(s)	125, 146, 265, 555
Hpy8I	GTNNAC	3 cut(s)	68, 96, 743
HpyAV	CCTTC	4 cut(s)	143, 306, 440, 641
HpyCH4III	ACNGT	2 cut(s)	302, 780
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	27, 233, 341, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	102, 222, 771
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	5 cut(s)	233, 551, 624, 673, 750
Kpn2I	TCCGGA	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	117, 185, 557, 736
LguI	GCTCTTC	1 cut(s)	574
Lsp1109I	GCAGC	3 cut(s)	325, 347, 772
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	413, 600
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	225, 419
MalI	GATC	4 cut(s)	119, 187, 559, 738
MboI	GATC	4 cut(s)	117, 185, 557, 736
MboII	GAAGA	4 cut(s)	275, 591, 641, 766
MflI	RGATCY	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	57, 141, 238, 505, 683
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	2 cut(s)	595, 807
MnlI	CCTC	5 cut(s)	30, 132, 297, 694, 766
Mox20I	TGGCCA	1 cut(s)	162
MroI	TCCGGA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	207, 639
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	338, 770
MspI	CCGG	2 cut(s)	519, 555
MspR9I	CCNGG	2 cut(s)	159, 720
MvaI	CCWGG	2 cut(s)	159, 720
MwoI	GCNNNNNNNGC	1 cut(s)	335
NcoI	CCATGG	2 cut(s)	669, 746
NdeII	GATC	4 cut(s)	117, 185, 557, 736
NlaIII	CATG	5 cut(s)	233, 551, 624, 673, 750
NlaIV	GGNNCC	1 cut(s)	517
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	2 cut(s)	233, 624
PaeR7I	CTCGAG	1 cut(s)	123
PciI	ACATGT	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	337, 340, 762
Ple19I	CGATCG	1 cut(s)	739
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	563
PscI	ACATGT	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	157, 718
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	2 cut(s)	157, 718
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	563, 716
PspPPI	RGGWCCY	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	117
PvuI	CGATCG	1 cut(s)	739
PvuII	CAGCTG	2 cut(s)	338, 770
RsaI	GTAC	2 cut(s)	299, 744
RsaNI	GTAC	2 cut(s)	298, 743
RseI	CAYNNNNRTG	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	207, 639
SatI	GCNGC	3 cut(s)	336, 339, 761
Sau3AI	GATC	4 cut(s)	117, 185, 557, 736
Sau96I	GGNCC	2 cut(s)	563, 716
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	159, 720
SfaNI	GCATC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	563
SlaI	CTCGAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	5 cut(s)	57, 141, 238, 505, 683
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	413, 600
StyD4I	CCNGG	2 cut(s)	157, 718
StyI	CCWWGG	2 cut(s)	669, 746
TaaI	ACNGT	2 cut(s)	302, 780
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	124
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	5 cut(s)	57, 141, 238, 505, 683
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	207, 639
Tru9I	TTAA	2 cut(s)	207, 639
TscAI	CASTG	2 cut(s)	405, 576
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	3 cut(s)	335, 338, 760
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	796
TspRI	CASTG	2 cut(s)	405, 576
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	2 cut(s)	233, 624
XhoI	CTCGAG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	413, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.